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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGGGTGTTCAAGAAAACGAGTAGAGGAATCGTTAAGAGCACCAAAAGAATCAAAACACCCGTCTCACGACGAAAGAGACATACAGATTCATTTGTCAGAAATTGCAACCAAAATCCGAAACAAGAAGAGAAAACTAACTACAGAAGACGATTTGAAGAAGAAGAAGAAAGCAAAAGAAAAAGGAAACTCCACCACCGTTCTTTCTCCTTTCTTCTCAGTTCCAAGAAAAAACAGAGCAACAGAAGCAAAATGGAAGACAGAGAAGAAGAAGATATAAGAAGGGGTAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGA mRNA sequence ATGTGGGTGTTCAAGAAAACGAGTAGAGGAATCGTTAAGAGCACCAAAAGAATCAAAACACCCGTCTCACGACGAAAGAGACATACAGATTCATTTGTCAGAAATTGCAACCAAAATCCGAAACAAGAAGAGAAAACTAACTACAGAAGACGATTTGAAGAAGAAGAAGAAAGCAAAAGAAAAAGGAAACTCCACCACCGTTCTTTCTCCTTTCTTCTCAGTTCCAAGAAAAAACAGAGCAACAGAAGCAAAATGGAAGACAGAGAAGAAGAAGATATAAGAAGGGGTAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGA Coding sequence (CDS) ATGTGGGTGTTCAAGAAAACGAGTAGAGGAATCGTTAAGAGCACCAAAAGAATCAAAACACCCGTCTCACGACGAAAGAGACATACAGATTCATTTGTCAGAAATTGCAACCAAAATCCGAAACAAGAAGAGAAAACTAACTACAGAAGACGATTTGAAGAAGAAGAAGAAAGCAAAAGAAAAAGGAAACTCCACCACCGTTCTTTCTCCTTTCTTCTCAGTTCCAAGAAAAAACAGAGCAACAGAAGCAAAATGGAAGACAGAGAAGAAGAAGATATAAGAAGGGGTAATAATGGCGGCGTTAAAACGGCAAATGGAGGTGGAAGAAGAGCTTGA Protein sequence MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKRKRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA*
Homology
BLAST of CsaV3_4G027410 vs. NCBI nr
Match: KGN54473.1 (hypothetical protein Csa_012524 [Cucumis sativus]) HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query: 1 MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60
MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR
Sbjct: 1 MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60
Query: 61 KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA 112
KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA
Sbjct: 61 KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA 111
BLAST of CsaV3_4G027410 vs. ExPASy TrEMBL
Match: A0A0A0KYB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337300 PE=4 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 6.0e-50 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query: 1 MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60
MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR
Sbjct: 1 MWVFKKTSRGIVKSTKRIKTPVSRRKRHTDSFVRNCNQNPKQEEKTNYRRRFEEEEESKR 60
Query: 61 KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA 112
KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA
Sbjct: 61 KRKLHHRSFSFLLSSKKKQSNRSKMEDREEEDIRRGNNGGVKTANGGGRRA 111
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KGN54473.1 | 1.2e-49 | 100.00 | hypothetical protein Csa_012524 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KYB2 | 6.0e-50 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337300 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 16..111 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 79..97 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 43..62 |
Relationships
The following mRNA feature(s) are a part of this gene:
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