CsaV3_4G027150 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G027150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein
Location	chr4: 16329185 .. 16332612 (+)
RNA-Seq Expression	CsaV3_4G027150
Synteny	CsaV3_4G027150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGATTGATGCCAAACCCATGTTTGATCCATGGAGTAAACTCAATGGCTTAACAAATGGGGTAAAGGAAGGGTTTTATCTTTTTACACATGAAAATAAAAAAATAAAAAGTCTTTCTCCACTTTCTTTCATCAATCCTTTCACATCTCTTTTCATCTACTTCCTCTGCTTTCTCATTCAAACTCTAATATTTTCATCTTCTCACCCATCTTTCTCATATCCTTCATGTATTCCCCTTGTTGGCATCTGGTCTTTCATCCAGGTGAATAATAACAAGCAAAAATTGGGTCGCTGATTTCTTTGAGTGAAGGAAATCGAAATTATGATCTCTTTCGATATCTTTCTTTTTTCTCATTCAAAGAAGTAAGGGTTAGAGGTGCTTTGTTTTGGCGGCCGAAATCGAATTCCAGTAGAAGGGATTGAATCCCAGCGGAGGAAAGATCGAATTTACGGTCGATTACCTGATTTATTTTGGCAGAGAAAATCAGAACCCAAAACTTTTGATATATTCACACGAAGGAAACCGACTGAGGTCTTATTGAAAAAGGGAAAGAAGAAGTTGTAGGTTTAGTTAACTGATCCTTAATGCTTCCTCGGGTACGTAATGCATTTGGTTCTTAATGCTTCCTCAGGTATGTAATGCCTTTTCTTTTTCTTTTTCTTTCTATAATGTCTTTTATTTTCTATAATGCTCTTTTTTTTCTGTAATAATTTTTTTTTTCTTTAATGCCTTACAAGAGACACTTTCATTTAGACCAATCTATTAACGATTTTTTTATTACTTTTTCTAATTCAAAGTTTATAATTTACGGTCTGTGATGTTCAAGATTAAGTTTTAAAACATTTTGATTACTTTATTTGTAATCTAGCGTTGCTTTTCAATTAAAGCCACTATCTACTATCTTTGTTTATTCATTGTCTTAGAAACTCCCTTCCAATGATAGAATCCACCTTTTGTTGCATTTTAGAAGTTGTGTATCCTTTGATAGACAACATTAAATTACCATAATTTTAGAGGTAGGGATTGTTGGTTTTGGATGATTCAGATTTTGGTGGGCGAGGTTTTTTTTTATGATTATTAAGTTCTCAAATTTTAGCTACCATCTTCACTAATGTTTTTTCTTCTTTTTATTATTGAATAAAAAAGGATCATACATTATTATTGATTTTTTTTTCCATTGATTATGTATTTATGGAAAATTTACTCACACTATTTTCACAATTTTGTTTTGATTGGTATATTAATGTGTTCTTTTATAAATTATTTTTTCGCTATTATTTATTAATTTTTTTTAGTCCATGTGATAGTTGAGAAATTTAAATTTGACAAAATAGATGGATTTGAGGGATTTTACTGTGAATAATTTTCATGTTTACTTCTAATAGTTGACTGAGATTTAAATTTGAAAAACTTATTTTTATTTGTATATGTGGTAGTTGTATTTGTATCGGATAATTTTAATGTTTATTAGGTAGTTGAGAGATTTAAATTTGGAAATTTTATATTTTTATTTGTATATGTGGTAGTTGTTTTTGTATTCAGCATTATTTCTTTATTTATACTTAATTGTGATTGAGTGATTTGAAACTAAAAATTTATTGGTTAACACTTGTTTTAATATAAATAGATCATTTATCCTCCCTAAACACATCACTCCTATGTTTTGTATCTAAAATTTACTTTATTGAGGGTGAGGTCTTACCATTCTCCCATACCATTCTCCCATTCTCCCTAAACACATCTATTTTTTCGCACTTTGTTTTTCCATGTTCTTTCATATTTTGTTTAGGGGTATATGTGCATTTTGCTTTGTTAGTGTGAAACTTTTTTTTTTTTTCCGACTATCATGAAGTAAGCAACTTTGTATACAAGGTAGGTGACTTTCAACGATATTTTATCTTGTCTTGCCTCGCACATTTAGACATTCACCATTACATAATGTGTTCTTTTCTTTTCCACATTTGTACATGAACTTTTGCGTTTTTAATTTATTTGTTAGTACGTTTATGTTTTGTATATTATGGTTGTGTTATATTTGTCATATTATTTATTTTAACTTTTAAGAATACTTTGTTTGAAATGTAATTTGAAATATTAAATTTTTCTTTCTAAGTTAATTTATATTGTTTTATCACATGATTTGTACTTGAACTATTTTTTGTGTGTAATTGGAGTTAGAAATACACGGGGGGTTCCCTTTAAATTATGAGAATTAAGTTATCTAGATGTCAATCTATAGATTTTGTATACATTAACTTTTATAAAATTCAAGTGTCAATTTAGATGGTGTTGACAAATTCAAAAGCCACTAAGCATCAGTGAACAATCATTGAGGATGAGGCATTAGTTGAGTGATTATTACAACTAGTGGAAGAAGGATGTAGCTAGAGGGCTGATAATGAAACATTCAAATCGAGATATTTGGTACATGTTCAAAAACTAACGAAAGAAAAAATTCTTGGAAGCAACATACAAGTAACTCCAATTTAGAGTCGAAAAGTGAAAATTTTGAAGAACCAGTTCACTATCATAGTAGAGATGATGGGGCCAGCATGTAGTGAGTTTGGTTGAAATGAGGAATGAAAGTGCACTGAGGCAAAGAAACATGTGTTCGATGACTAGGTTAAGGTAAGACGATGAATATAATTCATACTTTCTATAAAAGTAAATTATAATATACCTACGTTTGTTAACTTCATATAGGGACACCTCAATGCTCGAGGTCTACTGAACAAACCATTTCCTTACTTGTATGACTTGAAAATTGTGTTTGGTAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGGAAACTTTGATATTCCAAATTCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAATGCGGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAAATTACCGACTATTCTTGGAATGAACGTGAACGATTGTTTAATTGTAGTTGAGTCTCTATTACCTTATCCCATGATGTTGCACAGACTACCCAGCAGAATGGAAGTACATAAAATGCATGTGTATCTTAAGAAGACAACTATAATCATCACTAAATGTAACTTTACTTAACTTTCATTTTTGTTTAACCATTTTGGTTATGCTTACTTTTGAAACATACTAGACCCTTTTAAATATTGCTTAACTAGAACTTTTGTAAACTCCGTCAAATTAAATGACTTGTTATATTCCTAATTAGACCG

mRNA sequence

ATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGGAAACTTTGATATTCCAAATTCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAATGCGGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAA

Coding sequence (CDS)

ATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGGAAACTTTGATATTCCAAATTCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAATGCGGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAA

Protein sequence

MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC*

Homology

[Close]

BLAST of CsaV3_4G027150 vs. NCBI nr
Match: KAE8649593.1 (hypothetical protein Csa_012732 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 4.8e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY
Sbjct: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 103
           SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC
Sbjct: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 102

[Close]

BLAST of CsaV3_4G027150 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 3.1e-31
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 4   QTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSYSED 63
           +TA+DIEEDDMDINL +FDIPN + LEPPSG+DM STPTSMAHDA SSR SKK RSYS D
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           LMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRL 209

[Close]

BLAST of CsaV3_4G027150 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 5.3e-31
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M SQTA+D EEDDMDINL +FDIPN + LEPPSG+DM STPTSM HDA SSR SKK RSY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           S DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRL 359

[Close]

BLAST of CsaV3_4G027150 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M  Q A+D EEDDMDINL +FDIPN + LEPPSG+DMSSTPTSMAHD  SS+ SKK RSY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 167

[Close]

BLAST of CsaV3_4G027150 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-30
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M  Q A+D EEDDMDINL +FDIPN + LEPPSG+DMSSTPTSMAHD  SS+ SKK RSY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 168

[Close]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL
Match: A0A0A0L1J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333120 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.3e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY
Sbjct: 22  MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 81

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 103
           SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC
Sbjct: 82  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 123

[Close]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-31
Identity = 74/97 (76.29%), Postives = 84/97 (86.60%), Query Frame = 0


Query: 4   QTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSYSED 63
           +TA+DIEEDDMDINL +FDIPN + LEPPSG+DM STPTSMAHDA SSR SKK RSYS D
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           LMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRL 209

[Close]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M SQTA+D EEDDMDINL +FDIPN + LEPPSG+DM STPTSM HDA SSR SKK RSY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           S DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRL 359

[Close]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M  Q A+D EEDDMDINL +FDIPN + LEPPSG+DMSSTPTSMAHD  SS+ SKK RSY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 168

[Close]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 74/100 (74.00%), Postives = 83/100 (83.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60
           M  Q A+D EEDDMDINL +FDIPN + LEPPSG+DMSSTPTSMAHD  SS+ SKK RSY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 167

The following BLAST results are available for this feature:

BLAST of CsaV3_4G027150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649593.1	4.8e-48	100.00	hypothetical protein Csa_012732 [Cucumis sativus]	[more]
KAA0050106.1	3.1e-31	76.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	5.3e-31	74.00	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
XP_008460440.1	2.6e-30	74.00	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	2.6e-30	74.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G027150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1J1	2.3e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333120 PE=4 SV=1	[more]
A0A5A7U7F7	1.5e-31	76.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7T4	2.6e-31	74.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	1.3e-30	74.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	1.3e-30	74.00	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]

BLAST of CsaV3_4G027150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G027150.1	CsaV3_4G027150.1	mRNA