CsaV3_4G026470 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G026470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	kinetochore protein SPC24 homolog
Location	chr4: 15750023 .. 15753887 (+)
RNA-Seq Expression	CsaV3_4G026470
Synteny	CsaV3_4G026470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAAATCAATATTGTAAATTAATAAACATTGATTTTGGCGCCTAAACAAAATCGATTTCTCTCGTTTCGGAGCCCTAGGAAGGAAGAACAGATATCGGCCCGAAGCATAAGTCCCCACCGACCACTGGAAATTCCCCTTTTTCTTCTTCACAGCCACCTCTCCTTGTTCATATCTTCTTCAATTAAGCAAAATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGGTATGTTGACTTCCCTTCTCTAATATGGGTTTTATTCATAATCATTTGGAGGTTTGTAATTTCGGGTCTTTTGGGGGAGAGCGAATTCATATAATTTATTTAACTAGTTACTAAACGAAGCAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTTATGGAGGAGATAAGATAAGTGTACGATTAACTTTAATTTTGCATTTTACTTCACGTGATTGTTTGTTCCTAATGTATTTGAGTATGTATACGATGCGCCTGGTTTTTTTCAACACATTGGTGACCAATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGTGAGTATACATTTTCTGTTTTGAAGTTGCTTTGTCATCTGTAATTGTTAAATGTTAATTCGGTAGCAATTATCTAAATCCTGTGAATTTTGAATCTATTTCAAAATTTTGTTGTTTTTAGTATTATCTGATAAACACAGTCTTTTATGTATTGTTAGTTAGAACTTGGAAGTACAAAAGCTGTAATGTATATAAGTTATAGGTTATTGGCACCTTTGTTTCTCCTATCGATTGCTTATGGTTAGAAAGGTTAACTAGGTAGACATTCCTCTGAAGATGGCTGCTTAGTTTTTGAACTAATGAACGTTTTGTAGGCTAATAGTTGATCCATGATATAGATAATGGCAACCTCTTTGAATGGAGTCTCTGTCCTATGTTGAAAATAGGAATCTTTTTTAAGGTATTTGAAGTTTGTAAAAGATGAGAGCGAGAAGAAACAAAGGTAACGATGATTAGTAAGCAACACTACCAAGTACAAAAAGTTGTCAAATTCATTATTTACTAAAGAGGTGAACTAGAATTACATCGAGCGTTAGGAATACAAACAAAGTCTCACATTGACTAGAAAAGAGAGAAATCTACAGTTCCATTGATATGAGGTTTTTTTTTTGGATAAAACCAAAAGCAAAGCTGCAAAGGCTTATGCCAAAGGTAGACGATAATACACTATTGCTGAGAGATGCGGCAGATCCATTGCCCTTCATGTCTGGAACTGTAGTACATTCCAGAACTGAATTTATGGTAGTTGAAACTATCGTATTTGTTTTAACTGTGAACTTATGAACTGGGTGGCTGTCAAAGATCCACTCAAGTTTCAGTAATATTGGTAGGCATTAATTTGACATTTCTTATCCTCTAAATTGATGTATATTTTCTATTTTTCTTGCAGGAGGAAGCTTTCAATGTATGCTTCAGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCGTATCCTTCGTTTGAGTTTATATTCTTTTCTGTTATATTTTTCTTTTTCCTTTTGCACTTAGCCAATTACTTTACCTTAACATGAATTGACTACAGATATTGTGGACAGAAATAAACGAGTTGTCCAAAAGTTTGAATTCGACCCAGCTAAGATATCTTCTTTTGACACATGCAATGGCCTTTGGAATATGATTAATTCCCCATAGTACAGATATCTATTACATTGTGATTTGTGAATTAGAAGCTTATTATTGCTTGGTCCTTTTAGTCACTTCATGGTATTACAATAGAACGCTTATTTTGTTGTGTATGTATGTTTGAAGGACTACTTTATAAGGTCCTCTTGTATGTGATAACTTGTTGTGAATCAAATCTCCTTGGTCCTTAATGATTATTGAAGAAAAGAATGTCCGTCTATGTTAAGGCCCCAAGCCATGAAAATGGTGAATGATGTTACTCATTTTCATGGATATTTGATGCTTGGAAGCAACTAACTTTGTATATATTCCACTGATCTCATGGAAGTTTAAATTCTACGATCTTTTGTAATTTGATTATATTAGTCGTTGAAAATGATTTTTTTACTTCCTTTATAGTTGAGGTTGAGGCTAATGTTTTAGCTCATGTGTTAGTTTGTTACTTTTCTGTTATTAACTTTAATCTTTCTCATTGTATATCTATACTTCCTTGGAGATGAGTTAAGTTTTGGTATTATTTCCTCCACTTTACATCTGTTAATAGCTATGGATCGTACAATGAAAATATTATGAACATGGGATGTTTATGTCAATTCTGATGTAATTCAGAGACAATATTCTATGATAATATTACTTATGTTAGAACACGCAGCAAATAGTTACAAGCCACCCGAAAGCAAGAAGGACAAGAGCTAGCCACCATCTTTCACAGATGATATTGGATTCAAGCACCATAAGCTTCATAAAATAGAGTTCATAATATCAGGTTTTACTCTTCCCCTCAATCTTTTTTTGGTTGACGGAGAGATATTGACAATTGTAGAATTATCTACTGTCTGAGCAAAGGACAATCAGCACATGAACTTAAATAGTTATCATAATTCTGAAACTGAAATAGTTATATTCTATAATTATCTTCTAGTATTGTTATTTCAAATGACAAACTTCTCCATTGACTGCAGTATCTAATTTTCTGGCTGGTTTGATCTTGAGATCTCTCCCTGTGTTTATAATGTTGAGTTTCTCGTTGTAGTTGCATAACAGACTTGACTTCCTCCGCTGGCATTATCCAGGTATTGGCGGTTTTTGAGGTTTATAGACTTGCAAGCTTCTGGTACAGCACTGCCTTTATACGCTTTGCAAATGTAGGCCATGAAGTTTTGGTAGTCCTGATTCAGACAAAAGAAAACAGATTGATTTCAAAGAATTACAAAGCAAAGAACAAGGAAAAAACTAGCTTGAATCGAAGCTGACCAACCTCCTGGAGAGGGTGATTATCGACAATGACCCATGGAACAAATCGGTGAGGCGGATTGAGGCGAGTAGTTTCAGAAGCATAGTATTGTTCAAGCTGCATTTCATTGACTTACTCAGGATTCAATCAAGAAAGAAACAGAAATAGAAGCTGTTAAGTAAGCAATGCTACCATTTTTCCATGCCCATTTCTGTAGCAATCTATTGGTATGGCACTCAACTGTGCAATATCAAAACACTTTGTCCATTCATTGTGTCTGTTTTGCACTGTCAATCCCTCAACACAATGGATGAATCTGAAATGTTCTTCCTTCACATGCCAAAACGCATAAGTTTAGTAGATTTAACATTTATATCGTGCCCATTTCTATAGCAATTTATACAATGAGTGACCAGTGCAGTTTACCTGTCTATGTCTAGATAAATTTCAATTTCAAACTCTACTGCATTTCAGTGTTAAGAAAACTCTTATAATATTTTATTATTGGTTGGTGATTACCATGGATTAGACACATTTCCGCCCATCCTATTATTTATTGGTAATTAACTATATTTGTAATTGAAGTGATAATAGTAAAAGAGTTAGTACTGTATCAGGGTAAACTGAAATG

mRNA sequence

ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTTATGGAGGAGATAAGATTGGTGACCAATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGAGGAAGCTTTCAATGTATGCTTCAGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGAGTTGTCCAAAAGTTTGAATTCGACCCAGCTAAGATATCTTCTTTTGACACATGCAATGGCCTTTGGAATATGATTAATTCCCCATAG

Coding sequence (CDS)

ATGGGAGATTTCGCCACAAATTCCAACATTGAGGAGCTCGCATCTTTTGCCGACGATTTGGTAGCAATCTTAAAGGACCCAACTGACGTTCGTAACTTGAATCAATGTCTTGAACATTTCAAGACTCTTCAATCTTCTTGTGACGATGATTTCACTAGTGTTCAAAGCTCACTTGAAGATTATGAGAAGAAAATTAAAGCATGCCGGGAGAAAACAGAAGAGGCCAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTAGAAAAGGAACTCGAAGAGGAGATTGGGAAAGGGCATTTGCTTATGGAGGAGATAAGATTGGTGACCAATGAGATTAATGAACTTGAATGCCGAAGGGTTTCTGTTCAAGAAAGGAAGCAAGCGATGAAGAAACTTGAGCAACAAGAACTTTGGGCTCAGAGGAAGCTTTCAATGTATGCTTCAGTTACTGATATTATACCAAACATGGAAGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGAGTTGTCCAAAAGTTTGAATTCGACCCAGCTAAGATATCTTCTTTTGACACATGCAATGGCCTTTGGAATATGATTAATTCCCCATAG

Protein sequence

MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRRVSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISSFDTCNGLWNMINSP*

Homology

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BLAST of CsaV3_4G026470 vs. NCBI nr
Match: XP_004148609.1 (kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical protein Csa_017916 [Cucumis sativus])

HSP 1 Score: 392.9 bits (1008), Expect = 1.7e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DPAKISSFDTCNGLWNMINSP
Sbjct: 181 DPAKISSFDTCNGLWNMINSP 201

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BLAST of CsaV3_4G026470 vs. NCBI nr
Match: XP_008464222.1 (PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo])

HSP 1 Score: 378.6 bits (971), Expect = 3.3e-101
Identity = 193/201 (96.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+ED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIRLVTNEINELE +R
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP KISSFDTCNGLWNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

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BLAST of CsaV3_4G026470 vs. NCBI nr
Match: XP_038883770.1 (kinetochore protein SPC24 homolog [Benincasa hispida])

HSP 1 Score: 338.6 bits (867), Expect = 3.8e-89
Identity = 168/201 (83.58%), Postives = 187/201 (93.03%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF + SNIE   SFADDLVA+LKDP DV++LNQCLEHFK LQSSCDDDF+SVQS ++D
Sbjct: 1   MGDFVSESNIEAFISFADDLVALLKDPFDVQDLNQCLEHFKALQSSCDDDFSSVQSLVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKIKAC++KTEEAKANTV DDEM ILEKEL+EE+GKGHLLMEEIRLVTNEINELE +R
Sbjct: 61  YEKKIKACQQKTEEAKANTVTDDEMVILEKELDEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +S+QERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDR+KR+VQ+FEF
Sbjct: 121 ISIQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRDKRIVQEFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           D  KISSFD CNG+WNMINSP
Sbjct: 181 DSTKISSFDICNGIWNMINSP 201

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BLAST of CsaV3_4G026470 vs. NCBI nr
Match: XP_022978290.1 (uncharacterized protein LOC111478320 [Cucurbita maxima])

HSP 1 Score: 316.2 bits (809), Expect = 2.0e-82
Identity = 158/201 (78.61%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++D
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+ +R
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP  ISSFD CNG+WNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

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BLAST of CsaV3_4G026470 vs. NCBI nr
Match: XP_022950424.1 (uncharacterized protein LOC111453528 [Cucurbita moschata])

HSP 1 Score: 313.2 bits (801), Expect = 1.7e-81
Identity = 156/201 (77.61%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           M DFA   NIEEL S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++D
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEA+ +TV+DDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+ +R
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP  ISSFD CNG+WNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

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BLAST of CsaV3_4G026470 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-44
Identity = 87/199 (43.72%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+RLV +E+ +L  + 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
            S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPAKISSFDTCNGLWNMIN 200
           +  K+++++TCN +W++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

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BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL
Match: A0A1S3CKZ4 (uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 193/201 (96.02%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDFATNSNIEELASFADDLVAILKDPTDV NLNQCLEHFKTLQSSCDDDF SVQSS+ED
Sbjct: 1   MGDFATNSNIEELASFADDLVAILKDPTDVHNLNQCLEHFKTLQSSCDDDFNSVQSSVED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKIKACREKTEEAKANTVADDEMEILEKELEEE+GKGHLLMEEIRLVTNEINELE +R
Sbjct: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVTNEINELERQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFEF
Sbjct: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP KISSFDTCNGLWNMINSP
Sbjct: 181 DPTKISSFDTCNGLWNMINSP 201

[Close]

BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.7e-83
Identity = 158/201 (78.61%), Postives = 183/201 (91.04%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           M DFA   NIEE+ S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++D
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEAKA+TVADDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+ +R
Sbjct: 61  YEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP  ISSFD CNG+WNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL
Match: A0A6J1GFS1 (uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC111453528 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 8.2e-82
Identity = 156/201 (77.61%), Postives = 182/201 (90.55%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           M DFA   NIEEL S+ DDLVA+L D  DV+ LNQCLEHFKTLQSSC DDF++VQSS++D
Sbjct: 1   MADFAGKFNIEELLSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEA+ +TV+DDE++ILEKEL EE+GKG+LLMEEIR++T+EIN+L+ +R
Sbjct: 61  YEKKIEACRQKTEEARTSTVSDDEIDILEKELGEELGKGNLLMEEIRIITSEINDLDRQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL  QRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEF
Sbjct: 121 ISVQERKQAMKKLEQQELRTQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEF 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP  ISSFD CNG+WNMINSP
Sbjct: 181 DPTNISSFDICNGIWNMINSP 201

[Close]

BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.9e-81
Identity = 156/201 (77.61%), Postives = 179/201 (89.05%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+   NIEEL S+ +DLVA+LKD  DV+ LNQCLEH K LQS CDDDF++V SS++D
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQD 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEAKA TVAD EM++LE+ELEEE+ K HLLMEEIRLVT+EINEL+C+R
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE 
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP K S+FD CN +W+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 201

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BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL
Match: A0A6J1CQL9 (uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.7e-77
Identity = 153/201 (76.12%), Postives = 175/201 (87.06%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MGDF+   NIEEL S+ +DLVA+LKD  DV+ LNQCLEH K LQS CDDDF    S++ +
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDF----SNVHN 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
           YEKKI+ACR+KTEEAKA TVAD EM++LE+ELEEE+ K HLLMEEIRLVT+EINEL+C+R
Sbjct: 61  YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIRLVTSEINELDCQR 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
           +SVQERKQAMKKLEQQEL AQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQKFE 
Sbjct: 121 ISVQERKQAMKKLEQQELRAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQKFEL 180

Query: 181 DPAKISSFDTCNGLWNMINSP 202
           DP K S+FD CN +W+MINSP
Sbjct: 181 DPTKTSAFDICNSIWDMINSP 197

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BLAST of CsaV3_4G026470 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 181.0 bits (458), Expect = 9.4e-46
Identity = 87/199 (43.72%), Postives = 145/199 (72.86%), Query Frame = 0


Query: 1   MGDFATNSNIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLED 60
           MG+ + N +IE+L S+ DDL+ +L        ++Q  E FK L  +C +DF  +Q S+ED
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIED 60

Query: 61  YEKKIKACREKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRR 120
            + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +   L +E+RLV +E+ +L  + 
Sbjct: 61  CKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELRLVADELKDLNAQL 120

Query: 121 VSVQERKQAMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEF 180
            S+ E KQ+ K+  + +L A++KLSMYASVT++IP+++D SKISG++VDR KR+++KF+F
Sbjct: 121 SSIDEHKQSTKRKVRDDLRAEKKLSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQF 180

Query: 181 DPAKISSFDTCNGLWNMIN 200
           +  K+++++TCN +W++IN
Sbjct: 181 ETNKMTAYETCNSIWSIIN 199

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BLAST of CsaV3_4G026470 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-29
Identity = 72/185 (38.92%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 9   NIEELASFADDLVAILKDPTDVRNLNQCLEHFKTLQSSCDDDFTSVQSSLEDYEKKIKAC 68
           N E + S+ D+L+ +L D      L Q LE  + +  SCD+DF  +  SL+D +KK+  C
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQDLQKKLDVC 66

Query: 69  REKTEEAKANTVADDEMEILEKELEEEIGKGHLLMEEIRLVTNEINELECRRVSVQERKQ 128
           +EKT+EA +    ++E+E L+KEL+EE+     L EE+R                +E + 
Sbjct: 67  KEKTDEANSEIADEEEIERLQKELDEELELECKLKEELRY-----------EALFEEHRL 126

Query: 129 AMKKLEQQELWAQRKLSMYASVTDIIPNMEDQSKISGHIVDRNKRVVQKFEFDPAKISS- 188
           A+K+ ++ +L  + KL MYASVT +IPN++D  K SG++V R+KR++ KFEFD  K +S 
Sbjct: 127 AIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSV 180

Query: 189 FDTCN 193
           ++TCN
Sbjct: 187 YETCN 180

The following BLAST results are available for this feature:

BLAST of CsaV3_4G026470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148609.1	1.7e-105	100.00	kinetochore protein SPC24 homolog [Cucumis sativus] >KAE8649568.1 hypothetical p...	[more]
XP_008464222.1	3.3e-101	96.02	PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]	[more]
XP_038883770.1	3.8e-89	83.58	kinetochore protein SPC24 homolog [Benincasa hispida]	[more]
XP_022978290.1	2.0e-82	78.61	uncharacterized protein LOC111478320 [Cucurbita maxima]	[more]
XP_022950424.1	1.7e-81	77.61	uncharacterized protein LOC111453528 [Cucurbita moschata]	[more]

BLAST of CsaV3_4G026470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	1.3e-44	43.72	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of CsaV3_4G026470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKZ4	1.6e-101	96.02	uncharacterized protein LOC103502153 OS=Cucumis melo OX=3656 GN=LOC103502153 PE=...	[more]
A0A6J1IPN8	9.7e-83	78.61	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]
A0A6J1GFS1	8.2e-82	77.61	uncharacterized protein LOC111453528 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A6J1CR83	6.9e-81	77.61	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQL9	2.7e-77	76.12	uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CsaV3_4G026470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08880.1	9.4e-46	43.72	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G01570.1	2.7e-29	38.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..133
None	No IPR available	COILS	Coil	Coil	coord: 58..98
None	No IPR available	GENE3D	3.30.160.570	Ncd80 complex, Spc24 subunit	coord: 139..200 e-value: 2.7E-10 score: 41.9
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G026470.1	CsaV3_4G026470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation