CsaV3_4G026180 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTAGTATGTGTGTGTTAGCTTCAATTGAAGTATTTACATCGCTTCTGTTCACTTTTCATTGCTTAATTTCTGTTCTGTCTTTACTTTTTTTTCAGTATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGTATGTATCTATATGTTTTCTTGAGTTTCTGTTTCTGTCTTCCATAAGTTTCTCTATCGTTTTTTATATTTTGAATTTTTTTTCGGGGGGAAAATGTTCAGGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS* Homology
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_004147884.1 (30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypothetical protein Csa_018058 [Cucumis sativus]) HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa]) HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51 Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida]) HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47 Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia]) HSP 1 Score: 193.7 bits (491), Expect = 8.8e-46 Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42 Identity = 98/120 (81.67%), Postives = 104/120 (86.67%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 7.3e-27 Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2) HSP 1 Score: 81.6 bits (200), Expect = 6.4e-15 Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2) HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05 Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A0A0KXY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51 Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51 Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 4.3e-46 Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1) HSP 1 Score: 179.9 bits (455), Expect = 6.4e-42 Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 0
BLAST of CsaV3_4G026180 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 ) HSP 1 Score: 121.3 bits (303), Expect = 5.2e-28 Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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