CsaV3_4G026180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G026180
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S31, chloroplastic
Locationchr4: 15474054 .. 15474603 (-)
RNA-Seq ExpressionCsaV3_4G026180
SyntenyCsaV3_4G026180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTAGTATGTGTGTGTTAGCTTCAATTGAAGTATTTACATCGCTTCTGTTCACTTTTCATTGCTTAATTTCTGTTCTGTCTTTACTTTTTTTTCAGTATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGTATGTATCTATATGTTTTCTTGAGTTTCTGTTTCTGTCTTCCATAAGTTTCTCTATCGTTTTTTATATTTTGAATTTTTTTTCGGGGGGAAAATGTTCAGGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG

mRNA sequence

ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG

Coding sequence (CDS)

ATGGCGTCTCTTCCTTTCGGACTTCTTCAGGCTCCATCTCAATCTCCTCGTTTCTTCTCTTTCTCCAAATCTGAAGCCCTAGGAACATCTCTTCGTGCTTCTTCTACCGCTTCTCTTGCAATCTCTACACCTTCATCTCCTTCTTCAATTCCTGCTATATATTGTGGCAGAGGCGATAAGAAAACGGAGAGAGGAAAGCGGTTCAATCATTCGTATGGAAATGCAAGGCCTCGGGACAAGACCAAGGGGAGAGGGACTCCGAGAGTACCAACTCCTCCTTCTCCGCCTAGGAAGGATAAATTTGACGACAATGAGAAAATCAAGATCGAGATTGACGAGTCTCTTTTTGGTAGCTAG

Protein sequence

MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS*
Homology
BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_004147884.1 (30S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypothetical protein Csa_018058 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60
           MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 118

BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51
Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQS----PRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSKSE LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSKSE LGTSLRASSTASLA ST SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTE+GKRFN SYGNARPR+KTKGRGTPRVPTPPSPPRKDKF+D+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 8.8e-46
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSKSE LGTSLRA STASLA S  SSPSS+PA+YCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+D+EKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

BLAST of CsaV3_4G026180 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42
Identity = 98/120 (81.67%), Postives = 104/120 (86.67%), Query Frame = 0

Query: 1   MASLPFGLLQA----PSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA    P+ SPR FSFSKSE LGTSLR S+     IS  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GISATSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.3e-27
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 20  SFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRD 79
           S S SE  G SL +  T   ++ST SS SSIP +YCGRGD+KT +GKRFNHS+GNARPR+
Sbjct: 22  SSSHSETAGVSL-SCFTHQFSLST-SSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRN 81

Query: 80  KTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           K+KGRG  RVP PP+PPRKDKF+++EKIKI+IDESLF +
Sbjct: 82  KSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 6.4e-15
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQSPR--FFSFSKSEAL-GTSLRASSTASLAISTPSSPSSIPAIYCGR 60
           MASL   LL  PS +     FSFS S+++ G SL +  T SL+ S  +SP ++P IYCGR
Sbjct: 1   MASL---LLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYCGR 60

Query: 61  GDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFD 103
           GD+KT +GKRFNHS+GNARP++K KGRG P+ P  P      K D
Sbjct: 61  GDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101

BLAST of CsaV3_4G026180 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 44 PSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARP-RDKTKGRGTPRVPTPPSPP 97
          P   +   A+ CGRGDKKT+RGKRF  SYGNARP R+K   R   RV  P S P
Sbjct: 21 PVISAEAEAVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A0A0KXY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60
           MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK
Sbjct: 1   MASLPFGLLQAPSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDK 60

Query: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS
Sbjct: 61  KTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 118

BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQS----PRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSKSE LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQS----PRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           M SLPFGLLQAPSQS    P +FSFSKSE LGTSLRASSTASLAISTPSSPSSIPA+YCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 119
           RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.3e-46
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0

Query: 1   MASLPFGLLQAPSQ----SPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA SQ    SPRFFSFSKSE LGTSLRA STASLA S  SSPSS+PA+YCG
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 111

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+D+EKIKIEID+SLF
Sbjct: 112 RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLF 170

BLAST of CsaV3_4G026180 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.4e-42
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 0

Query: 1   MASLPFGLLQA----PSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60
           MASLPFGLLQA    P+ SPR FSFSKSE LGTSLR S+      S  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60

Query: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 116

BLAST of CsaV3_4G026180 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-28
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 20  SFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCGRGDKKTERGKRFNHSYGNARPRD 79
           S S SE  G SL +  T   ++ST SS SSIP +YCGRGD+KT +GKRFNHS+GNARPR+
Sbjct: 22  SSSHSETAGVSL-SCFTHQFSLST-SSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRN 81

Query: 80  KTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLFGS 119
           K+KGRG  RVP PP+PPRKDKF+++EKIKI+IDESLF +
Sbjct: 82  KSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFSN 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004147884.12.5e-56100.0030S ribosomal protein S31, chloroplastic [Cucumis sativus] >KGN54373.1 hypotheti... [more]
XP_008449316.12.4e-5190.98PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1... [more]
XP_038882305.11.2e-4786.8930S ribosomal protein S31, chloroplastic [Benincasa hispida][more]
XP_022151467.18.8e-4685.8330S ribosomal protein S31, chloroplastic [Momordica charantia][more]
XP_023517799.13.5e-4281.6730S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
O804397.3e-2765.6630S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3... [more]
P479106.4e-1551.4330S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P... [more]
P479093.5e-0555.5630S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994... [more]
Match NameE-valueIdentityDescription
A0A0A0KXY41.2e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308630 PE=3 SV=1[more]
A0A5A7TU271.2e-5190.9830S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BL511.2e-5190.9830S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228... [more]
A0A6J1DDL34.3e-4685.8330S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1HRX46.4e-4280.8330S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146... [more]
Match NameE-valueIdentityDescription
AT2G38140.15.2e-2865.66plastid-specific ribosomal protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03082630S ribosomal proteinTIGRFAMTIGR04560TIGR04560coord: 56..80
e-value: 6.2E-11
score: 40.1
IPR03082630S ribosomal proteinPFAMPF17067RPS31coord: 19..99
e-value: 1.8E-29
score: 101.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..50
NoneNo IPR availablePANTHERPTHR34550:SF230S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..116
IPR04469530S ribosomal protein S31, plantPANTHERPTHR3455030S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G026180.1CsaV3_4G026180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005840 ribosome