|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTAATCCAACATTAGCATTTAACAATAGCCGTGAAAACAACAAAACCCACAATTTCATTCTTACCAAACAAAACTCCGACAGTTCGTGGCAAGGCAGAAGCGGCGACTTAGAAAAGCTGGAATCTATGCGCGTAGATCGGGACAGAGAGGAGTGGCTCGGACGGAGGTGCGCGACTGGGTGAGGGAGAAAGCAGGGGGAACGCGTAACAACTGGAAAAGAAAACTCGCGCGCGCGGCTCAGATCTGAAGAAGACGTGAAACGCGCTCCACGACGGGAGGCAGTCGGACGGCAAGGAAGAAATGGACGCTGCGGCTTGGGCTATCGGAGACGCGACGGTGCGTTGGCGTTCGTCGGAGCAACTAAACGGAAAAGAAGAAAAGAAGCAACTAAGGGCGGCAGCTAG mRNA sequence ATGATTAATCCAACATTAGCATTTAACAATAGCCGTGAAAACAACAAAACCCACAATTTCATTCTTACCAAACAAAACTCCGACAGTTCGTGGCAAGGCAGAAGCGGCGACTTAGAAAAGCTGGAATCTATGCGCGTAGATCGGGACAGAGAGGAGTGGCTCGGACGGAGATCTGAAGAAGACGTGAAACGCGCTCCACGACGGGAGGCAGTCGGACGGCAAGGAAGAAATGGACGCTGCGGCTTGGGCTATCGGAGACGCGACGGTGCGTTGGCGTTCGTCGGAGCAACTAAACGGAAAAGAAGAAAAGAAGCAACTAAGGGCGGCAGCTAG Coding sequence (CDS) ATGATTAATCCAACATTAGCATTTAACAATAGCCGTGAAAACAACAAAACCCACAATTTCATTCTTACCAAACAAAACTCCGACAGTTCGTGGCAAGGCAGAAGCGGCGACTTAGAAAAGCTGGAATCTATGCGCGTAGATCGGGACAGAGAGGAGTGGCTCGGACGGAGATCTGAAGAAGACGTGAAACGCGCTCCACGACGGGAGGCAGTCGGACGGCAAGGAAGAAATGGACGCTGCGGCTTGGGCTATCGGAGACGCGACGGTGCGTTGGCGTTCGTCGGAGCAACTAAACGGAAAAGAAGAAAAGAAGCAACTAAGGGCGGCAGCTAG Protein sequence MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEEDVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS*
Homology
BLAST of CsaV3_4G026090 vs. NCBI nr
Match: KGN54363.1 (hypothetical protein Csa_017872 [Cucumis sativus]) HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE 60
MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE
Sbjct: 1 MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE 60
Query: 61 DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS 111
DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS
Sbjct: 61 DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS 110
BLAST of CsaV3_4G026090 vs. ExPASy TrEMBL
Match: A0A0A0KXX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308530 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE 60
MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE
Sbjct: 1 MINPTLAFNNSRENNKTHNFILTKQNSDSSWQGRSGDLEKLESMRVDRDREEWLGRRSEE 60
Query: 61 DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS 111
DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS
Sbjct: 61 DVKRAPRREAVGRQGRNGRCGLGYRRRDGALAFVGATKRKRRKEATKGGS 110
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN54363.1 | 1.0e-51 | 100.00 | hypothetical protein Csa_017872 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KXX1 | 4.9e-52 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308530 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..82 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..74 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
