CsaV3_4G025960 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G025960
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 15296417 .. 15297531 (+)
RNA-Seq Expression	CsaV3_4G025960
Synteny	CsaV3_4G025960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGTACTAAAAAATATATGCTTATATTTTAAAAATTTGACAAAAGAAAAGAATCTGATATCTTCGTTAGGCCAAATAGATACAAAAGATCACGCTTACACTAAAACAATAATTTAACACCAACAAAACAAATATAGTTAAAATTATTTTATTTTATTTTTGTTTTGAATATAATAACAACGATATAATTAAAATTGTAAAAAAATATTTATATTAAAAATGTAAAGAAAAATATCAAATATCTATAGAATTTTAATTTTGTCATTGAAGGGGAAAAATAGACCAAAAAGAAAAAAAGAAAAAAATAAAAGAAAATAAAAGAAAGTGTTACCATTTAATAGGCAAAAAATAAAAATAATAGTAAGCTTCTCAAGCTCCTTAATATTTTTGATTTGGTATAGTCCCTTCATCTTTTTGCACCCACGTTTCTTCCTCTCTCTTCCCCCGTGACATTGATTATTAACTATCATCTTCTTTCTTTCTTCCTTAGGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGGTTTTATTCCTCCTTTTCTCTTTTTCTCTTTTCGTTTTCTACTACTTTTCTTTTTTATTCTTTTATTCCTCTGTTCTTTTTACGTATCATTTTCTTCCTTTGCTGCTTATTTGCTGTCAATTTGCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGTTGTTTCATCAGCTAGGGTTGTGGGTTTTCGTTATATGAGTAATGCGGTTATTAGTTGGGGTAAGCGGTAGTTATTATGATTTTAATTTTGTGTTGTTTTGGGCTTTTTTTTGGACTTGTAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

mRNA sequence

ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Coding sequence (CDS)

ATGGAGGATCTAATTTTCGACTATGTGAAAGGTGACATGATTCAATACGAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCCTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Protein sequence

MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSISDFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQDFPCV*

Homology

[Close]

BLAST of CsaV3_4G025960 vs. NCBI nr
Match: KGN54350.1 (hypothetical protein Csa_018029 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 2.5e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60
           MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120
           DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ
Sbjct: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

Query: 121 DFPCV 126
           DFPCV
Sbjct: 121 DFPCV 125

[Close]

BLAST of CsaV3_4G025960 vs. ExPASy TrEMBL
Match: A0A0A0KXG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.2e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60
           MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120
           DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ
Sbjct: 61  DFPPFFFSLTSFFIPAVAGSYFRHGFILDCNCYLRIETPGVWDFALFQACAENWAVGEVQ 120

Query: 121 DFPCV 126
           DFPCV
Sbjct: 121 DFPCV 125

The following BLAST results are available for this feature:

BLAST of CsaV3_4G025960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54350.1	2.5e-67	100.00	hypothetical protein Csa_018029 [Cucumis sativus]	[more]

BLAST of CsaV3_4G025960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G025960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG8	1.2e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1	[more]

BLAST of CsaV3_4G025960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G025960.1	CsaV3_4G025960.1	mRNA