CsaV3_4G025580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G025580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 15055173 .. 15055919 (+)
RNA-Seq Expression	CsaV3_4G025580
Synteny	CsaV3_4G025580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTGCTTCCCTTCTCCCACGAACTTTCCTTAATCCTTCTCCTAGCTTCCTTGGATCCACAAACCCCTATTTATTTCCACTCCCTAATTAAACTCCTCAAATCTCACCTCCACGAATATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGAGACGACATGTCGTCCGCCTTGGTTTGTTTGTTGTGTAATTGTATTTTTTTTAAAAGGAGGATGTAATTGTAATTAACCATAAGTATAAAAATCAAAGGCCACAATACATTTTGTTTTGTCTTTTTTGGGTTTTTAGAAAATAATAATAACAATCAAACTGTTCAAACCTCATAAATATTTTGTAATATTTCAATTTTTGACAAATTTCCTTTTTTTATACAAATAATATTCTTGTTATTATTTGTTTTA

mRNA sequence

ATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGA

Coding sequence (CDS)

ATGCTTCCTCCATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTTTCAGTTCACTCGCCGCCGCTGCCGCTCCACCACCTACCTCCGCCGAATCGCCTTCTGTAAGAAAGCTTGGGAAGCACCAGAGTACGGCGATTGCCTTTTCGAGTCCGACTGAAGCGCCGCGAAGCGTAATGAAAGTCCAGGGGACCTCGGGGGCGAGCGGTGGAGAGAGTGGGAATGCGGTTGAATTGGGGAATCATGACCATCACAAGTCGAGAGATAAGTCTATCGCCGGCGGAGGTGTGATTTTGGGCGGACTCGCTACGACTTTTTTGGTGGCGGTTATATGTTACATAAGAGCTACGAGACGACAGAAAAGTGAACTTGGCTCTTGA

Protein sequence

MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMKVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSELGS*

Homology

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BLAST of CsaV3_4G025580 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 4.4e-59
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM
Sbjct: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 121 KSELGS 127
           KSELGS
Sbjct: 121 KSELGS 126

[Close]

BLAST of CsaV3_4G025580 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 2.2e-55
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           M+PPFLFLLFIFANA FSSLAAAAAPPPTSAESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 3   MVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122

Query: 121 KSELGS 127
           KSELGS
Sbjct: 123 KSELGS 128

[Close]

BLAST of CsaV3_4G025580 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36
Identity = 87/120 (72.50%), Postives = 100/120 (83.33%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           ++ PFLFLLFIFANAL  S+A  AAPPPT+AE PS RKLGKH STA+ FSSP+EAPRS  
Sbjct: 22  IMAPFLFLLFIFANALLGSVAVGAAPPPTAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEK 81

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KV   S A+ G +GN +EL NH+HHKS DKS+AGGGVILGGLATTFLVA++CYIRATRRQ
Sbjct: 82  KV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQ 138

[Close]

BLAST of CsaV3_4G025580 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 80/131 (61.07%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   FLFLLFIFANALFSSL-------AAAAAPPPTSAESPSVRKLGKHQSTAI--AFSSPTEA 64
           FLF+LFIFANA  +S+        AA +P  T AE+PS RKLGKH+S A   + SSP+EA
Sbjct: 4   FLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSPSEA 63

Query: 65  PRSVMKVQGTSGASGGESGNAVELGNHDH--HKSRDKSIAGGGVILGGLATTFLVAVICY 124
           PRS MKVQ TS A       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVA+ICY
Sbjct: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123

[Close]

BLAST of CsaV3_4G025580 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 5.9e-24
Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 2   LPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMK 61
           + PFLFLLFIFA+AL  S A AA P       PS RKLG H S A   SSP+EAP+S +K
Sbjct: 1   MAPFLFLLFIFASALLDSAAVAAEP-------PSARKLGNHWSAAAVSSSPSEAPQSEIK 60

Query: 62  VQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 121
           V                L N +HHKSRD SIAGGGVILGGLATTF VA+ICYIRAT+RQ 
Sbjct: 61  V----------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQN 100

Query: 122 SEL 125
           SE+
Sbjct: 121 SEV 100

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BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM
Sbjct: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ
Sbjct: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120

Query: 121 KSELGS 127
           KSELGS
Sbjct: 121 KSELGS 126

[Close]

BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           M+PPFLFLLFIFANA FSSLAAAAAPPPTSAESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 3   MVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122

Query: 121 KSELGS 127
           KSELGS
Sbjct: 123 KSELGS 128

[Close]

BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MLPPFLFLLFIFANALFSSLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVM 60
           M+PPFLFLLFIFANA FSSLAAAAAPPPTSAESPS+RKLGKHQSTAIAFSSP EAPRS M
Sbjct: 3   MVPPFLFLLFIFANAFFSSLAAAAAPPPTSAESPSLRKLGKHQSTAIAFSSPIEAPRSEM 62

Query: 61  KVQGTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQ 120
           KVQGTS ASGGESGNAV+LGNHDHHKSRDKSIAGGGVILGGLATTFLVA+ICYIRATRRQ
Sbjct: 63  KVQGTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQ 122

Query: 121 KSELGS 127
           KSELGS
Sbjct: 123 KSELGS 128

[Close]

BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 80/131 (61.07%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   FLFLLFIFANALFSSL-------AAAAAPPPTSAESPSVRKLGKHQSTAI--AFSSPTEA 64
           FLF+LFIFANA  +S+        AA +P  T AE+PS RKLGKH+S A   + SSP+EA
Sbjct: 4   FLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSPSEA 63

Query: 65  PRSVMKVQGTSGASGGESGNAVELGNHDH--HKSRDKSIAGGGVILGGLATTFLVAVICY 124
           PRS MKVQ TS A       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVA+ICY
Sbjct: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123

[Close]

BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL
Match: A0A5D2BCQ1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 65/139 (46.76%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 6   LFLLFIFANALFSSLAAAAAP-PPTSAESPSVRKLGKHQSTA----IAFSSPTEAPRSVM 65
           LFL+  F     S  A A AP  P  AE+P++RKLGKHQ          SSP++AP +  
Sbjct: 9   LFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSPSQAPHTKK 68

Query: 66  KVQGTSGASGGE----------------SGNAVELGNHDHHKSRDKSIAGGGVILGGLAT 124
            +  T G+   +                 G A+ L NH HH S DKS+AGGGVILGGLAT
Sbjct: 69  NMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHHHSMDKSVAGGGVILGGLAT 128

[Close]

BLAST of CsaV3_4G025580 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 9.5e-12
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 19  SLAAAAAPPPTSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMKVQGTSGASGGESGNAVE 78
           S+AAA+    + AE P+ RKLG+H+          EAP  V  ++ T           V 
Sbjct: 17  SMAAAS----SEAEPPATRKLGRHEWP----GEEAEAP-EVSHLEET-----------VR 76

Query: 79  LGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQK 122
            G+  HH + ++S+AGGGVILGGLATTFLV V CYIRATR+ K
Sbjct: 77  RGH--HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHK 97

The following BLAST results are available for this feature:

BLAST of CsaV3_4G025580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54308.1	4.4e-59	100.00	hypothetical protein Csa_017945 [Cucumis sativus]	[more]
XP_008448528.1	2.2e-55	93.65	PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc...	[more]
KAG6603622.1	1.0e-36	72.50	hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151558.1	4.9e-26	61.07	uncharacterized protein LOC111019472 [Momordica charantia]	[more]
KAG6595353.1	5.9e-24	58.54	hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_4G025580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G025580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXQ0	2.1e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1	[more]
A0A5A7TSM2	1.1e-55	93.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJV8	1.1e-55	93.65	uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=...	[more]
A0A6J1DCH7	2.4e-26	61.07	uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D2BCQ1	5.8e-17	46.76	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=...	[more]

BLAST of CsaV3_4G025580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	9.5e-12	45.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..72
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34558:SF9	F3L24.15 PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G025580.1	CsaV3_4G025580.1	mRNA