CsaV3_4G025140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G025140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	chr4: 14763104 .. 14763438 (+)
RNA-Seq Expression	CsaV3_4G025140
Synteny	CsaV3_4G025140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTGTACTTAGCTGCATCACGGTATTCGATTCGCCAAATTTACAACATCATAGTCGGAATTTTAACTGTTTGATCGATTCGTTCATCAGTTTCGTCACTCTGGATCCTCTGTTCGTGA

mRNA sequence

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTTTTCGTCACTCTGGATCCTCTGTTCGTGA

Coding sequence (CDS)

ATGTCGCCACCGGAAATGGAGAAGACCGACAAGAACGGTGATGAGTGTCTAACTCCAAAGAGCTGTGCATGTAGAATTCCGAAGGTTTTCAAATGCCCTCCACCGCCCAAGAAGAAATCGTTTACCGGCCGGAAGCTGGCCCCTCCGACAAGGGGTTATTTCCAGCCTCCCGATCTCGATACTCTGTTTTCCATGCCGCCTTCATCACGATGGGAAGCTTTTTCGTCACTCTGGATCCTCTGTTCGTGA

Protein sequence

MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRWEAFSSLWILCS*

Homology

[Close]

BLAST of CsaV3_4G025140 vs. NCBI nr
Match: KGN54563.2 (hypothetical protein Csa_017876 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 5.4e-42
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD
Sbjct: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEAFSSLWILCS 83
          TLFSMPPSSRWEAFSSLWILCS
Sbjct: 61 TLFSMPPSSRWEAFSSLWILCS 82

[Close]

BLAST of CsaV3_4G025140 vs. NCBI nr
Match: KAA0032664.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23544.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 8.9e-29
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MS PEMEKTDKNGDECLTPKS ACRIP   KCPPPPKKK+ TGRKLAPPT GYFQPPDLD
Sbjct: 1  MSLPEMEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEA 74
           LFS+PPSSRWEA
Sbjct: 61 ALFSIPPSSRWEA 73

[Close]

BLAST of CsaV3_4G025140 vs. NCBI nr
Match: KAG6603646.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033830.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 6  MEKTD----KNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 65
          MEKTD     NG+ECLTP++CA RIP   KCPPPPKKK+ TGRK  PPT GYF PPDLD 
Sbjct: 1  MEKTDARSATNGNECLTPRNCAFRIPAASKCPPPPKKKAVTGRKQPPPTSGYFHPPDLDA 60

Query: 66 LFSMPPSSRWEA 74
          LFSMPPSSRWEA
Sbjct: 61 LFSMPPSSRWEA 72

[Close]

BLAST of CsaV3_4G025140 vs. NCBI nr
Match: XP_002531566.1 (cyclin-dependent protein kinase inhibitor SMR4 [Ricinus communis] >EEF30832.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 13 GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRW 72
          G+EC TP+S  CRIP VF CPPPP+KKS TG K  PP  GYFQPPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]

BLAST of CsaV3_4G025140 vs. NCBI nr
Match: XP_030511104.1 (cyclin-dependent protein kinase inhibitor SMR4 [Cannabis sativa])

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 5  EMEKTDKN---GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 64
          E E++D N   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+
Sbjct: 3  EYERSDTNTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 62

Query: 65 LFSMP 67
          LF +P
Sbjct: 63 LFVIP 67

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-11
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 8  KTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPP 67
          KT+   + C TP+S   RIP    CPPPP+KK    RK  PP  GYFQPPDL+TLF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 16 CLTPKSCACRIPKVFKCPPPPKKKSFT---GRKLAPPTRGYFQPPDLDTLFSMPPSSR 71
          C TP    CRIP    CPPP ++K      G+K  PP +GYFQPPDLD  FS+  +S+
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQ 79

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL
Match: A0A0A0KXI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD
Sbjct: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEA 74
          TLFSMPPSSRWEA
Sbjct: 61 TLFSMPPSSRWEA 73

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL
Match: A0A5A7SNA9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00480 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.3e-29
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MSPPEMEKTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLD 60
          MS PEMEKTDKNGDECLTPKS ACRIP   KCPPPPKKK+ TGRKLAPPT GYFQPPDLD
Sbjct: 1  MSLPEMEKTDKNGDECLTPKSYACRIPTFSKCPPPPKKKAVTGRKLAPPTSGYFQPPDLD 60

Query: 61 TLFSMPPSSRWEA 74
           LFS+PPSSRWEA
Sbjct: 61 ALFSIPPSSRWEA 73

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL
Match: B9SZZ7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 13 GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPPSSRW 72
          G+EC TP+S  CRIP VF CPPPP+KKS TG K  PP  GYFQPPDLD L S+PP   W
Sbjct: 14 GEECRTPRSRECRIPLVFVCPPPPRKKSATGTKRDPPKNGYFQPPDLDLLLSVPPRKAW 72

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL
Match: A0A803QBN7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 5   EMEKTDKN---GDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDT 64
           E E++D N   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+
Sbjct: 109 EYERSDTNTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDS 168

Query: 65  LFSMP 67
           LF +P
Sbjct: 169 LFVIP 173

[Close]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL
Match: A0A7J6H051 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 5  EMEKTD-KNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLF 64
          E E++D   G++C TPK   CRIP+ F CPPPPKKKS +G K  PP  GYF PPDLD+LF
Sbjct: 3  EYERSDTMEGEDCTTPKRRECRIPETFVCPPPPKKKSMSGTKRQPPKNGYFHPPDLDSLF 62

Query: 65 SMP 67
           +P
Sbjct: 63 VIP 65

[Close]

BLAST of CsaV3_4G025140 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 6.2e-12
Identity = 32/60 (53.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 8  KTDKNGDECLTPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLFSMPP 67
          KT+   + C TP+S   RIP    CPPPP+KK    RK  PP  GYFQPPDL+TLF   P
Sbjct: 7  KTEMAEEGCTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLFYAQP 66

[Close]

BLAST of CsaV3_4G025140 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 7.3e-05
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 18  TPKSCACRIPKVFKCPPPPKKKSFTGRKLAPPTRGYFQPPDLDTLF 64
           TP + + RIP V  CPP PKK+  T  K++   R +F PPDL+T+F
Sbjct: 57  TPTADSVRIPTVIPCPPAPKKRKLT-LKVSYGPREFFSPPDLETVF 101

[Close]

BLAST of CsaV3_4G025140 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 1   MSPPEMEKTDKNGDEC-LTPKSCACRIPKVFKCPPPPKKKSFTGR-KLAPPTRGYFQPPD 60
           +SP       +  D+C  TP + + RIP+V  CP  PKK+  + +      TR YF PPD
Sbjct: 40  LSPGVTVTETEEQDQCPTTPTAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPD 99

Query: 61  LDTLF 64
           L+T+F
Sbjct: 100 LETVF 104

The following BLAST results are available for this feature:

BLAST of CsaV3_4G025140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54563.2	5.4e-42	100.00	hypothetical protein Csa_017876 [Cucumis sativus]	[more]
KAA0032664.1	8.9e-29	86.30	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYK23...	[more]
KAG6603646.1	8.1e-22	73.61	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_002531566.1	2.1e-14	66.10	cyclin-dependent protein kinase inhibitor SMR4 [Ricinus communis] >EEF30832.1 co...	[more]
XP_030511104.1	9.0e-13	58.46	cyclin-dependent protein kinase inhibitor SMR4 [Cannabis sativa]	[more]

BLAST of CsaV3_4G025140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	8.7e-11	53.33	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	1.2e-07	48.28	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CsaV3_4G025140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI9	1.3e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296170 PE=4 SV=1	[more]
A0A5A7SNA9	4.3e-29	86.30	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
B9SZZ7	1.0e-14	66.10	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0452270 PE=4 SV=1	[more]
A0A803QBN7	4.3e-13	58.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6H051	1.3e-12	58.73	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_011058 PE=4 SV=1	[more]

BLAST of CsaV3_4G025140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	6.2e-12	53.33	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	7.3e-05	47.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10690.1	2.1e-04	38.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..69
None	No IPR available	PANTHER	PTHR33142:SF53	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G025140.1	CsaV3_4G025140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication