CsaV3_4G025070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G025070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	UPF0161 protein At3g09310
Location	chr4: 14727824 .. 14730211 (-)
RNA-Seq Expression	CsaV3_4G025070
Synteny	CsaV3_4G025070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAATCAACAAACTAGTCCAAATTGAAGATGATGTCATAGTAAACACTTTTGTAAAATGAAGGAAAACAATCCAATTATATCTATGATTCAGTTCCCATTAGTATTGTTTATCGTAAATTTCTTCTCCTTTTTTTTTAAAAAAAATACAAACTTCATTGGCGTTGGCAGTAACTGTTAGAGCAGATTGACATGGCGGTTCTTCCCACCACAAACTGCCACACATCCCAAAACCTGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCTCTGCCGCCGGCTTCAGTATTCGATTTAATTGCCGGAAGCTCCGTCGCTCGTTAATCCTAAGCGAAACGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGGTACTTGCCTCTTCTTCACTCAATATTTTTCTGTACTCAATGTATAGATTTCGGTGAATTAGGGCATTTTAATCGTTTGCACAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGTAAGTAGAATAGTGATGTTTATTCTGTTTTAAGATTCTAACTCGAAGAGTTTCAGAATTCGATCCGATTGAAGATAACACGTGCCTTTGAGTTCTTACTTGAATAATTGTGAGCAGGAGAAATCTCACCGCTATTGCCAAATAGTTGTCGCTATTTACCCACATGTAGTGAGTATTCGATGCAAGCTTACAAGAAATACGGTGTTGCCAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTAATGATCTCATTCAAAGGGAACGAACAAGATGAGTGAGAATCATCTTCTTGAACCTTCAGGAAGGGGATTTGTCCGTGTTTATGTTATTTGGTTTTTAATTCTGTAAAGTACTGATTTTAGGCCATTGCTGCCTTGTAGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGATTGCCAGAACCAGAAGATTGACAATTTCAAATGCTGCATATAATTTGTTAGTATGTGATACGGACCAAGAGTTCACTGTGATGAGTTTTTCAGTTTTCTTTCCTGATATTGCATTCTTGGAAGAAGGGTAGTGTAAAGTTGCTGCATTCCCGAGTCATTTGGTTTTGAAAAGGTTAAAATCATTTTTGTCATGTTTTTAAGTTTTGAAATTGTTAAAATCACTTTTGTCATGTTTTTAATTATTTAAACGGGTCTGATGGATGAGTTTACACTTTTCTAACACGTTTTTCTTTGAACAGAAATATTTTTGAATGATTAAGAGCAATTTAAAACATTTTTGTAATGATTTCTAACCCTTTCAAAATTAGTTCTGCTTGTGGGAAGCTAGTCCAATTGTTCTTTGACAAACTTAAAACTATGTATTATATACTAACTTATCATTCAGATGCAAAAAGGTTATGATTGGTAATCCTTCCATAACCAATTTGATTGATGGAATCTTGAAGGATATTTTGTATTATTACTGATATCAAATGTTCCATATGATGATGACGACTTCCTTGGTGATTATATGAAAGGAAGATATCTTCCCATGCCTTGGTGCTTTTTTGTTGGGCTGTTACACCGCCAGTAGACTTGGTGAGATCAAATAGCTCAAGTTATTTAGGGCCAACTTAAATTAACTTTCTAGGAAAAAGTTGATAAAGTTCTTGAAAATTCAGTCCAAATAATCCCTTTTCGTTTATGATTTTAATATATTTCTAATACCTTCACTCACACGTAGATATTAGAATTATAGACATGGACACATAAAATTGAGGCGATGCCTAGTCACTCTTAGATTAAATGTTTGAGATATTGGGGGATGAATCCATATTTTCTTTCCTCATAATTTCTGCCATTTTGAGAAGGAGTTTTGTGTTATGTAATTTATGTTAGTTTAGTTTAGTTCTTTTGCTGGGGTTTGAAGGTTCTTTCAATCTCATCACCCAGATTTCTTTGCAGGTTGTGTTGGTTGATTGTTGGGGTGAATTTGTGAGAGCTAATTCCCTGTGCAGAGCGAAGAATGTTGTAGAAAATAGCATGTTACACCAATATTTTTGTAACTGGAGTTGTGAATGTGGAACTTGTTCTGAGAAAGTAACATAATATTATGTTAGATTACAATTGTGATATGCTGACTTTAGCTTATACTGATCATATTAAATGTACAATATCTGTTTTCTTTTTTTATTATTAGAATTAGTACATGATATAGTCTTTTTTTAGTAGCTTTACTTTACATATTCCATTATCAGGAATTTGTTCAAAAAATATTTACTTGATGTAATATTGAAATTTCCTATATTATAACCTAAATGAAAATAGCATAAAAATAGATTTGCGATTTTTCTAGGAGTTTTTGCACTAAATATCC

mRNA sequence

ATGGCGGTTCTTCCCACCACAAACTGCCACACATCCCAAAACCTGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCTCTGCCGCCGGCTTCAGTATTCGATTTAATTGCCGGAAGCTCCGTCGCTCGTTAATCCTAAGCGAAACGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGAGAAATCTCACCGCTATTGCCAAATAGTTGTCGCTATTTACCCACATGTAGTGAGTATTCGATGCAAGCTTACAAGAAATACGGTGTTGCCAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTAATGATCTCATTCAAAGGGAACGAACAAGATGA

Coding sequence (CDS)

ATGGCGGTTCTTCCCACCACAAACTGCCACACATCCCAAAACCTGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCTCTGCCGCCGGCTTCAGTATTCGATTTAATTGCCGGAAGCTCCGTCGCTCGTTAATCCTAAGCGAAACGCGCGCCACATCGAACTCAAGCGCGAACAGCGACCAAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGAGAAATCTCACCGCTATTGCCAAATAGTTGTCGCTATTTACCCACATGTAGTGAGTATTCGATGCAAGCTTACAAGAAATACGGTGTTGCCAAGGGTACTATCTTGACTGCTTGGCGTCTCTGTCGCTGCAATCCCCTTGGTAATGATCTCATTCAAAGGGAACGAACAAGATGA

Protein sequence

MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSANSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDLIQRERTR*

Homology

[Close]

BLAST of CsaV3_4G025070 vs. NCBI nr
Match: XP_031739628.1 (UPF0161 protein At3g09310 isoform X2 [Cucumis sativus] >KAE8649534.1 hypothetical protein Csa_018048 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGNDLIQRERTR 143
           TAWRLCRCNPLGNDLIQRERTR
Sbjct: 121 TAWRLCRCNPLGNDLIQRERTR 142

[Close]

BLAST of CsaV3_4G025070 vs. NCBI nr
Match: XP_004142065.1 (UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 protein At3g09310 isoform X1 [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 132

[Close]

BLAST of CsaV3_4G025070 vs. NCBI nr
Match: KAA0032659.1 (UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNC+T QNLNPIFF GRCHQRP  AAGFSIRFNCRKLRR LILSETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGN 134
           TAWRLCRCNPLG+
Sbjct: 121 TAWRLCRCNPLGH 133

[Close]

BLAST of CsaV3_4G025070 vs. NCBI nr
Match: XP_008448003.1 (PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: UPF0161 protein At3g09310 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNC+T QNLNPIFF GRCHQRP  AAGFSIRFNCRKLRR LILSETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 132

[Close]

BLAST of CsaV3_4G025070 vs. NCBI nr
Match: XP_038882934.1 (UPF0161 protein At3g09310 isoform X1 [Benincasa hispida])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 125/144 (86.81%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVL TTNCH  QN NP FFAGRCHQRP SAA FSI++N R LRR LILS+TRATSNSS+
Sbjct: 1   MAVLSTTNCHKLQNQNPSFFAGRCHQRPFSAADFSIQYNRRNLRRPLILSKTRATSNSSS 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLGND--LIQRERTR 143
           TAWRLCRCNPLGND  L+QRE  R
Sbjct: 121 TAWRLCRCNPLGNDIALLQRELAR 144

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot
Match: Q9SR32 (UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 5.5e-29
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 49  LSETRATSNSSANSDQDG-EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQ 108
           LS     S     S QDG E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+
Sbjct: 50  LSAKSTPSKPDPASPQDGEELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSME 109

Query: 109 AYKKYGVAKGTILTAWRLCRCNPLG 133
           AYKKYGV KGT+LT WRLCRCNPLG
Sbjct: 110 AYKKYGVLKGTVLTTWRLCRCNPLG 134

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot
Match: C0QTH8 (Putative membrane protein insertion efficiency factor OS=Persephonella marina (strain DSM 14350 / EX-H1) OX=123214 GN=PERMA_0195 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-14
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 77  LSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP 131
           + ++K YK+ +SP LPNSCRY PTCS Y++Q+ +KYG  KG++   WR+ RCNP
Sbjct: 6   IKLIKIYKKFVSPALPNSCRYYPTCSSYAIQSIEKYGALKGSLKAVWRILRCNP 59

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot
Match: Q7NJB9 (Putative membrane protein insertion efficiency factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=gsl1913 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 74  KAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-- 133
           +AA   ++FY+R +SPL P +CRY+PTCSEY+ QA +++GVA G  L   RLCRC+PL  
Sbjct: 6   RAATGAIRFYQRFVSPLTPPTCRYVPTCSEYTRQAIERFGVAAGIWLGTKRLCRCHPLHP 65

Query: 134 -GNDLIQRERT 142
            G D +   R+
Sbjct: 66  GGYDPVPERRS 76

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot
Match: B0K8I2 (Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) OX=340099 GN=Teth39_2293 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 79  MLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP 131
           ++K Y+R ISP+ P SCR+ PTCS+YS++A  KYG+ KG I++ WR+ RCNP
Sbjct: 8   LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNP 59

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot
Match: B0K5N7 (Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter sp. (strain X514) OX=399726 GN=Teth514_2412 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-13
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 79  MLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP 131
           ++K Y+R ISP+ P SCR+ PTCS+YS++A  KYG+ KG I++ WR+ RCNP
Sbjct: 8   LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNP 59

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL
Match: A0A0A0KXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 132

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL
Match: A0A5A7STY4 (UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00430 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNC+T QNLNPIFF GRCHQRP  AAGFSIRFNCRKLRR LILSETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLGN 134
           TAWRLCRCNPLG+
Sbjct: 121 TAWRLCRCNPLGH 133

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL
Match: A0A1S3BJN3 (UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 124/132 (93.94%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNC+T QNLNPIFF GRCHQRP  AAGFSIRFNCRKLRR LILSETRATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGT+L
Sbjct: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTVL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 132

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL
Match: A0A6J1EUS1 (UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-59
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNCH  QN NPIFFAG C +   SAA FSIRFN +KLRR LI+SETRATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGGCQKSHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NGDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 132

[Close]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL
Match: A0A6J1HNH0 (UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.5e-57
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60
           MAVLPTTNCH  Q   PIFFAG C Q   SAA FSIRFN +KLRR LI+SETRATSNSSA
Sbjct: 1   MAVLPTTNCHKLQ--KPIFFAGGCQQTHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 61  NSDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTIL 120
           N DQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRY+PTCSEYSMQAYKKYGVAKGTIL
Sbjct: 61  NEDQDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYVPTCSEYSMQAYKKYGVAKGTIL 120

Query: 121 TAWRLCRCNPLG 133
           TAWRLCRCNPLG
Sbjct: 121 TAWRLCRCNPLG 130

[Close]

BLAST of CsaV3_4G025070 vs. TAIR 10
Match: AT3G09310.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast hits to 5781 proteins in 1903 species: Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-30
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 49  LSETRATSNSSANSDQDG-EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQ 108
           LS     S     S QDG E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+
Sbjct: 50  LSAKSTPSKPDPASPQDGEELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSME 109

Query: 109 AYKKYGVAKGTILTAWRLCRCNPLG 133
           AYKKYGV KGT+LT WRLCRCNPLG
Sbjct: 110 AYKKYGVLKGTVLTTWRLCRCNPLG 134

The following BLAST results are available for this feature:

BLAST of CsaV3_4G025070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739628.1	2.0e-76	100.00	UPF0161 protein At3g09310 isoform X2 [Cucumis sativus] >KAE8649534.1 hypothetica...	[more]
XP_004142065.1	2.1e-70	100.00	UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 p...	[more]
KAA0032659.1	2.7e-65	93.23	UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis ...	[more]
XP_008448003.1	3.5e-65	93.94	PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: U...	[more]
XP_038882934.1	2.5e-63	86.81	UPF0161 protein At3g09310 isoform X1 [Benincasa hispida]	[more]

BLAST of CsaV3_4G025070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR32	5.5e-29	70.59	UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2	[more]
C0QTH8	5.0e-14	53.70	Putative membrane protein insertion efficiency factor OS=Persephonella marina (s...	[more]
Q7NJB9	1.1e-13	49.30	Putative membrane protein insertion efficiency factor OS=Gloeobacter violaceus (...	[more]
B0K8I2	2.5e-13	55.77	Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter pseu...	[more]
B0K5N7	2.5e-13	55.77	Putative membrane protein insertion efficiency factor OS=Thermoanaerobacter sp. ...	[more]

BLAST of CsaV3_4G025070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI4	1.0e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1	[more]
A0A5A7STY4	1.3e-65	93.23	UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G0043...	[more]
A0A1S3BJN3	1.7e-65	93.94	UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1	[more]
A0A6J1EUS1	1.8e-59	88.64	UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=...	[more]
A0A6J1HNH0	6.5e-57	87.12	UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1	[more]

BLAST of CsaV3_4G025070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09310.1	3.9e-30	70.59	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002696	Putative membrane protein insertion efficiency factor	SMART	SM01234	Haemolytic_2	coord: 72..136 e-value: 9.5E-29 score: 111.5
IPR002696	Putative membrane protein insertion efficiency factor	PFAM	PF01809	YidD	coord: 75..132 e-value: 1.8E-23 score: 82.2
IPR002696	Putative membrane protein insertion efficiency factor	TIGRFAM	TIGR00278	TIGR00278	coord: 78..131 e-value: 4.4E-19 score: 66.1
IPR002696	Putative membrane protein insertion efficiency factor	PANTHER	PTHR33383	MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED	coord: 23..134
IPR002696	Putative membrane protein insertion efficiency factor	HAMAP	MF_00386	UPF0161_YidD	coord: 72..140 score: 18.441248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G025070.1	CsaV3_4G025070.1	mRNA