CsaV3_4G014870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G014870
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 10356302 .. 10356737 (-)
RNA-Seq ExpressionCsaV3_4G014870
SyntenyCsaV3_4G014870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCTCGTATCCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATTCAAGCAAGCCCATCCAAACACATCAACTCAACATCCCGCTCTCACTCCCCACCCGACGTAGGGGCGCAACATTCCGACCAAACCCTTCCGCCAAGAAGGAAGTAATCGCAAGTCATCTTGTATTCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCACATCAACTCGACATCCCGCTCTCGCTCTCCACCCGACGTAAAGGCTCGGTATTTTGACCAAACCCTTCCAACAACCACGAAGCAATCGCAAGTCATCTCGTATTGTCAAGAGCAAGCAAGCCCGGACGACGCCCACAACAAGGTGCAAGCATTATCTAGGCCTGCCCATTCGA

mRNA sequence

ATGACATCTCGTATCCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATTCAAGCAAGCCCATCCAAACACATCAACTCAACATCCCGCTCTCACTCCCCACCCGACGTAGGGGCGCAACATTCCGACCAAACCCTTCCGCCAAGAAGGAAGTAATCGCAAGTCATCTTGTATTCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCACATCAACTCGACATCCCGCTCTCGCTCTCCACCCGACGTAAAGGCTCGGTATTTTGACCAAACCCTTCCAACAACCACGAAGCAATCGCAAGTCATCTCGTATTGTCAAGAGCAAGCAAGCCCGGACGACGCCCACAACAAGGTGCAAGCATTATCTAGGCCTGCCCATTCGA

Coding sequence (CDS)

ATGACATCTCGTATCCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATTCAAGCAAGCCCATCCAAACACATCAACTCAACATCCCGCTCTCACTCCCCACCCGACGTAGGGGCGCAACATTCCGACCAAACCCTTCCGCCAAGAAGGAAGTAATCGCAAGTCATCTTGTATTCTCAAGAACAAGCAAGCCCAAACGACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCACATCAACTCGACATCCCGCTCTCGCTCTCCACCCGACGTAAAGGCTCGGTATTTTGACCAAACCCTTCCAACAACCACGAAGCAATCGCAAGTCATCTCGTATTGTCAAGAGCAAGCAAGCCCGGACGACGCCCACAACAAGGTGCAAGCATTATCTAGGCCTGCCCATTCGA

Protein sequence

MTSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIASHLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARYFDQTLPTTTKQSQVISYCQEQASPDDAHNKVQALSRPAHSX
Homology
BLAST of CsaV3_4G014870 vs. NCBI nr
Match: KAE8649393.1 (hypothetical protein Csa_011819, partial [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MTSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIAS 60
           MTSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIAS
Sbjct: 1   MTSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIAS 60

Query: 61  HLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARYFDQTLPTTTKQSQVI 120
           HLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARYFDQTLPTTTKQSQVI
Sbjct: 61  HLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARYFDQTLPTTTKQSQVI 120

Query: 121 SYCQEQASPDDAHNKVQALSRPAHS 146
           SYCQEQASPDDAHNKVQALSRPAHS
Sbjct: 121 SYCQEQASPDDAHNKVQALSRPAHS 145

BLAST of CsaV3_4G014870 vs. NCBI nr
Match: KAE8637138.1 (hypothetical protein CSA_015445 [Cucumis sativus] >KAE8637435.1 hypothetical protein CSA_004613 [Cucumis sativus] >KAE8637437.1 hypothetical protein CSA_004615 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-29
Identity = 86/167 (51.50%), Postives = 94/167 (56.29%), Query Frame = 0

Query: 2   TSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRG----------------- 61
           TSRIL+NKQ QTTPTTKCKHH SKPIQ +QL+IPLSLPTRRRG                 
Sbjct: 112 TSRILENKQPQTTPTTKCKHHPSKPIQANQLDIPLSLPTRRRGPAFRLKQHPSSKKQSQV 171

Query: 62  --------------------------------------------ATFRPNPSAKKEVIAS 108
                                                        TFRPNPS K+E I  
Sbjct: 172 ISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALTPHPTFGEKPTFRPNPSTKQEAIER 231

BLAST of CsaV3_4G014870 vs. NCBI nr
Match: KAE8637438.1 (hypothetical protein CSA_004616 [Cucumis sativus] >KAE8637439.1 hypothetical protein CSA_004617 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 75/150 (50.00%), Postives = 80/150 (53.33%), Query Frame = 0

Query: 2   TSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRG----------------- 61
           TSRIL+NKQ QTTPTTKCKHH SKPIQ +QL+IPLSLPTRRRG                 
Sbjct: 112 TSRILENKQPQTTPTTKCKHHPSKPIQANQLDIPLSLPTRRRGPAFRLKQHPSSKKQSQV 171

Query: 62  --------------------------------------------ATFRPNPSAKKEVIAS 91
                                                        TFRPNPS K+E I  
Sbjct: 172 ISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALTPHPTFGEKPTFRPNPSTKQEAIER 231

BLAST of CsaV3_4G014870 vs. NCBI nr
Match: KAE8637548.1 (hypothetical protein CSA_023857, partial [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-23
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = 0

Query: 3   SRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIASHL 62
           SRIL+NK+AQTTPTT+CKHH SKPIQ HQL+IP SLPTRR+G+  RPNPS   E IASHL
Sbjct: 199 SRILENKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNPSNNHEAIASHL 258

Query: 63  VFSRTSKPKRRPQQSASII 82
           V SR SKP RRPQQ ASII
Sbjct: 259 VLSRASKPGRRPQQGASII 277

BLAST of CsaV3_4G014870 vs. NCBI nr
Match: KAE8637434.1 (hypothetical protein CSA_004612 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-21
Identity = 75/150 (50.00%), Postives = 92/150 (61.33%), Query Frame = 0

Query: 2   TSRILKNKQAQTTPTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFR--PNPSAKKEVIA 61
           TSRIL+NKQ QTTPTTKCKHH SKPIQ +QL+IPLSLPTRRRG  FR   +PS+KK+   
Sbjct: 112 TSRILENKQPQTTPTTKCKHHPSKPIQANQLDIPLSLPTRRRGPAFRLKQHPSSKKQSQV 171

Query: 62  SHLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSP-----PDVKARYFDQTLPTTT 121
                 + S      +  AS  QA PS      + +  P      D+  + F Q      
Sbjct: 172 ISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALTPHPTFGEKTDIPTKPFHQ----AK 231

Query: 122 KQSQVISYCQEQASPDDAHNKVQALSRPAH 145
           KQS+ ISY +E+ASP+DAHNKVQA S+ AH
Sbjct: 232 KQSKDISYPRERASPNDAHNKVQASSKQAH 257

BLAST of CsaV3_4G014870 vs. ExPASy TrEMBL
Match: A0A5A7UP03 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00670 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 67/143 (46.85%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 12  QTTPTTKCKHHSSKPIQTHQL----NIPLSLPTRRRGATF---RPNPSAKKEVIASHLVF 71
           +T+    C   SS+ IQ        +   SLP R  G TF   +PNPS  +E I  HL+ 
Sbjct: 121 RTSTPRLCSQRSSRIIQARPSKYINSTSHSLPARCTGPTFHQLQPNPSTNQEAIPRHLLS 180

Query: 72  SRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARY---FDQTLPTTTKQSQVIS 131
            RTS  + R Q+ ASIIQASPSK I STSRS SPPDV  RY    +QTLP   KQ Q I 
Sbjct: 181 PRTSTLRIRSQRDASIIQASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQDIL 240

Query: 132 YCQEQASPDDAHNKVQALSRPAH 145
           Y   Q   + +HN+VQALS+ A+
Sbjct: 241 YLHGQGRREYSHNEVQALSKQAY 263

BLAST of CsaV3_4G014870 vs. ExPASy TrEMBL
Match: A0A5D3DBP5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00310 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.6e-16
Identity = 67/143 (46.85%), Postives = 82/143 (57.34%), Query Frame = 0

Query: 12  QTTPTTKCKHHSSKPIQTHQL----NIPLSLPTRRRGATF---RPNPSAKKEVIASHLVF 71
           +T+    C   SS+ IQ        +   SLP R  G TF   +PNPS  +E I  HL+ 
Sbjct: 23  RTSTPRLCSQRSSRIIQARPSKYINSTSHSLPARCTGPTFHQLQPNPSTNQEAIPRHLLS 82

Query: 72  SRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPDVKARY---FDQTLPTTTKQSQVIS 131
            RTS  + R Q+ ASIIQASPSK I STSRS SPPDV  RY    +QTLP   KQ Q I 
Sbjct: 83  PRTSTLRIRSQRDASIIQASPSKFIKSTSRSHSPPDVGVRYSIHSNQTLPPNKKQLQDIL 142

Query: 132 YCQEQASPDDAHNKVQALSRPAH 145
           Y   Q   + +HN+VQALS+ A+
Sbjct: 143 YLHGQGRREYSHNEVQALSKQAY 165

BLAST of CsaV3_4G014870 vs. ExPASy TrEMBL
Match: A0A5A7SSW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001570 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 41  RRRGATFRPNPSAKKEVIASHLVFSRTSKPKRRPQQSASIIQASPSKHINSTSRSRSPPD 100
           R+     R NPS K +VIAS LV  RTS P+   QQ  SII+ SPS++INSTSRS SPPD
Sbjct: 10  RKSDVALRSNPSTKHKVIASPLVSPRTSTPRLCQQQGTSIIRPSPSEYINSTSRSHSPPD 69

BLAST of CsaV3_4G014870 vs. ExPASy TrEMBL
Match: A0A5D3BW21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00500 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 60/183 (32.79%), Postives = 82/183 (44.81%), Query Frame = 0

Query: 2   TSRILKNKQAQTT-PTTKCKHHSSKPIQTHQLNIPLSLPTRRRGATFRPNPSAKKEVIAS 61
           TSRI  NK A++  P        +K I+  + +IPLSLP ++     R NPS + + IA 
Sbjct: 103 TSRIDTNKPARSARPHRGASIVQAKLIRVREHDIPLSLPVQQSNVALRRNPSTEHKEIAR 162

Query: 62  HLVFSR---------------------------------TSKP--------------KRR 121
           HLV SR                                 T+KP              K+ 
Sbjct: 163 HLVSSRISPLGVYAYIEVQALSLQAHPSINSTLALTPCPTNKPIVMAKPLHQARSNRKKS 222

Query: 122 P------QQSASIIQASPSKHINSTSRSRSPPDVKARY---FDQTLPTTTKQSQVISYCQ 128
           P       +  ++ + +PSK++N TSRS S PDV A++   FDQTLP   KQSQ ISY  
Sbjct: 223 PLGVHAHAEVQALSKQNPSKNVNLTSRSHSLPDVGAQHSIDFDQTLPPNKKQSQDISYRH 282

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649393.13.9e-72100.00hypothetical protein Csa_011819, partial [Cucumis sativus][more]
KAE8637138.13.2e-2951.50hypothetical protein CSA_015445 [Cucumis sativus] >KAE8637435.1 hypothetical pro... [more]
KAE8637438.12.0e-2350.00hypothetical protein CSA_004616 [Cucumis sativus] >KAE8637439.1 hypothetical pro... [more]
KAE8637548.12.6e-2375.95hypothetical protein CSA_023857, partial [Cucumis sativus][more]
KAE8637434.13.2e-2150.00hypothetical protein CSA_004612 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UP035.6e-1646.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DBP55.6e-1646.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SSW52.4e-0658.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BW212.0e-0532.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 143..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G014870.1CsaV3_4G014870.1mRNA