CsaV3_4G011680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G011680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 8705205 .. 8705421 (-)
RNA-Seq Expression	CsaV3_4G011680
Synteny	CsaV3_4G011680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCAGTTTGACCAATAACGAAGGTAACACGAAATCAGATACAAGTAGCAAGATCAATAATTGGTCTAGTGTGAACGAAAATGATGTCGTTGAGGTTATCATGCCACCACCAGAACTCCAACCATCTCGAAAGAAGAGGAAAAACACGTTTATGGTATGGGATCATTTTACTAAATGCTCTAAATATAGTGATGATGATCCACATGCTAAAT

mRNA sequence

ATGTCGACCAGTTTGACCAATAACGAAGGTAACACGAAATCAGATACAAGTAGCAAGATCAATAATTGGTCTAGTGTGAACGAAAATGATGTCGTTGAGGTTATCATGCCACCACCAGAACTCCAACCATCTCGAAAGAAGAGGAAAAACACGTTTATGGTATGGGATCATTTTACTAAATGCTCTAAATATAGTGATGATGATCCACATGCTAAAT

Coding sequence (CDS)

ATGTCGACCAGTTTGACCAATAACGAAGGTAACACGAAATCAGATACAAGTAGCAAGATCAATAATTGGTCTAGTGTGAACGAAAATGATGTCGTTGAGGTTATCATGCCACCACCAGAACTCCAACCATCTCGAAAGAAGAGGAAAAACACGTTTATGGTATGGGATCATTTTACTAAATGCTCTAAATATAGTGATGATGATCCACATGCTAAAT

Protein sequence

MSTSLTNNEGNTKSDTSSKINNWSSVNENDVVEVIMPPPELQPSRKKRKNTFMVWDHFTKCSKYSDDDPHAKX

Homology

[Close]

BLAST of CsaV3_4G011680 vs. NCBI nr
Match: KAE8649353.1 (hypothetical protein Csa_019156, partial [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSTSLTNNEGNTKSDTSSKINNWSSVNENDVVEVIMPPPELQPSRKKRKNTFMVWDHFTK 60
          MSTSLTNNEGNTKSDTSSKINNWSSVNENDVVEVIMPPPELQPSRKKRKNTFMVWDHFTK
Sbjct: 1  MSTSLTNNEGNTKSDTSSKINNWSSVNENDVVEVIMPPPELQPSRKKRKNTFMVWDHFTK 60

Query: 61 CSKYSDDDPHAK 73
          CSKYSDDDPHAK
Sbjct: 61 CSKYSDDDPHAK 72

[Close]

BLAST of CsaV3_4G011680 vs. NCBI nr
Match: XP_038904318.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 24  SSVNENDVVEVIMPPPELQP-------------SRKKRKNTFMVWDHFTKCSKYSDDDPH 73
           S  N+++   V+MP   L P             S +KRKN+ M+WDHFTK S+YSDDDPH
Sbjct: 54  SKSNDSNDDVVVMPSLPLPPRKNESGETVSKHISGRKRKNSSMIWDHFTKYSEYSDDDPH 113

The following BLAST results are available for this feature:

BLAST of CsaV3_4G011680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649353.1	2.0e-32	100.00	hypothetical protein Csa_019156, partial [Cucumis sativus]	[more]
XP_038904318.1	3.9e-04	46.77	zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]	[more]

BLAST of CsaV3_4G011680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G011680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G011680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G011680.1	CsaV3_4G011680.1	mRNA