CsaV3_4G005630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005630
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionlate embryogenesis abundant protein D-29-like
Locationchr4: 3734351 .. 3735519 (-)
RNA-Seq ExpressionCsaV3_4G005630
SyntenyCsaV3_4G005630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTTATAACAAATATATGGGTTATTGTCAAACACATATTCAATGAGTTTTGTAATTGCTAATCTCCTAAATAACCGTAATGCATATAAATTTGCAAAAAGAAAAGACTGAATGAGGAATGGGTAAACCTGATTTGGTGGAAATCGGACTACCAAGAACTAAAATTACCAAACTTGGAGAAAAGTGGATACGTGTCCTATTCAACGCAACCCTCGAAGATACGACTGAGGTAAATAACCGCCACGTCTGATACAAAACAAGCCACGTAACCGTCTCCCCTCGCCGGCTTCTCTCCCAAAAACCTCCCAACCCCACATTCAAATACCTAAACTTATAAACTCATAATTTCACTGCCCCAATCTCCATTCCCATTTCTTTTTTAATTTTTATATATAGTTTGTATTTTAGTTGGATCGGAGAAAAAAGAAGGAAGAAAATTAGAAATAATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGTAACACCTCTTTTTCTTTCTCTTTCTCTTTCTAATCTAATTACATTCTAATAGAACTAAATGAATTTAGTAATATTAGTTATCTCTGCCTCAAAATGATCCACCCAAACATCGTTTTTTAGATTATATTACATTACAAAATCAGAAAAATTAAGATCATTAGTTTTGTTGGCTTTGAATATGAATGGGTTAAATTTGAAACAGGGGATTGGGATTGAGCGAAGAATCGAAAGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAACACAGCTGCTTCAGGTAAATTACGCATTATTGTTTTATCATTATCTCTAAATCAAAATGTTTGAAAAATTATATATAATATTTGAAAAATAATTCTACTTATTTTGGAAGAAATTGGGTTGGTAATATACATTTTTTAATGGCCAGAATTGTTTTGCCTGTTATAGTCTAATCTTTGGACATTTTCTCTCAAATTGGGTGAAGTA

mRNA sequence

ATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGGGATTGGGATTGAGCGAAGAATCGAAAGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAA

Coding sequence (CDS)

ATGGGGAGGAAAACAATGACGTTGTTGGTGGCGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGATAAATGCAGTGGGTTTGAAGAAGCAGTACAAGATATGAAGGACAATGTGAAGCAAATGGCGGAAGATGCAAAGCTTGATGAAAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGATGCTAAGGACAAGGCTTCCTCCTGGTCCAACTGGGCTTACGACAAGATTTCCGCGGGATTGGGATTGAGCGAAGAATCGAAAGAGAAAGAGACAGCTCCTAACGCAGCAGATAAAAATTAA

Protein sequence

MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASEVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN*
Homology
[Close]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match: XP_004146505.1 (late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53307.1 hypothetical protein Csa_014395 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 104
           VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN
Sbjct: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 103

[Close]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match: XP_008452083.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044797.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa] >TYK16667.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 2.0e-30
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKT TL+  VAVVWLVLVA+KCSG+ EAV+D+KDNV ++AEDAKLDEKAEAVKS ASE
Sbjct: 1   MGRKTATLV--VAVVWLVLVAEKCSGYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           VY+DAKDKA SWSNWAYDKIS GLGLSE+ + KETA N ADK
Sbjct: 61  VYSDAKDKAESWSNWAYDKISKGLGLSEK-ELKETAHNVADK 99

[Close]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match: XP_004146555.1 (late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypothetical protein Csa_015110 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRKT TL+  VAVVWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTRTLV--VAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 100

[Close]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match: XP_008452082.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044798.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa] >TYK16666.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSG-FEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRK MTL+  VAVV LVLVA+KC G  E+AVQD+KD++ + A+DAKLDEKAEAVKS AS
Sbjct: 1   MGRKMMTLV--VAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVY+DAKDKA SWSNWAYDKIS GLGLSEE + KE A + ADK
Sbjct: 61  EVYSDAKDKAESWSNWAYDKISKGLGLSEE-ESKEKAHDGADK 100

[Close]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match: XP_038906272.1 (late embryogenesis abundant protein D-29 isoform X1 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGR +M  L  VAVVWL+LVADKC G  EEA+QD+KDNV ++ +D  LDEKAEAVKS AS
Sbjct: 1   MGRTSM--LSVVAVVWLLLVADKCRGMGEEALQDVKDNVSEITKDTSLDEKAEAVKSGAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           +V+ DAK+ A SWSNWAY KIS GLG + E + KETA    DK
Sbjct: 61  DVFHDAKENAESWSNWAYGKISKGLGFNGE-ELKETAHYVVDK 100

[Close]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match: A0A0A0KY19 (Late embryogenesis abundant OS=Cucumis sativus OX=3659 GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.9e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 104
           VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN
Sbjct: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADKN 103

[Close]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match: A0A5A7TSE6 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004980 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.9e-31
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKT TL+  VAVVWLVLVA+KCSG+ EAV+D+KDNV ++AEDAKLDEKAEAVKS ASE
Sbjct: 1   MGRKTATLV--VAVVWLVLVAEKCSGYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           VY+DAKDKA SWSNWAYDKIS GLGLSE+ + KETA N ADK
Sbjct: 61  VYSDAKDKAESWSNWAYDKISKGLGLSEK-ELKETAHNVADK 99

[Close]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match: A0A1S3BT31 (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493195 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.9e-31
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASE 60
           MGRKT TL+  VAVVWLVLVA+KCSG+ EAV+D+KDNV ++AEDAKLDEKAEAVKS ASE
Sbjct: 1   MGRKTATLV--VAVVWLVLVAEKCSGYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASE 60

Query: 61  VYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           VY+DAKDKA SWSNWAYDKIS GLGLSE+ + KETA N ADK
Sbjct: 61  VYSDAKDKAESWSNWAYDKISKGLGLSEK-ELKETAHNVADK 99

[Close]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match: A0A0A0KUJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRKT TL+  VAVVWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTRTLV--VAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 100

[Close]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match: A0A5D3D1U2 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004970 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 0 

Query: 1   MGRKTMTLLVAVAVVWLVLVADKCSG-FEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60
           MGRK MTL+  VAVV LVLVA+KC G  E+AVQD+KD++ + A+DAKLDEKAEAVKS AS
Sbjct: 1   MGRKMMTLV--VAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTAS 60

Query: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 103
           EVY+DAKDKA SWSNWAYDKIS GLGLSEE + KE A + ADK
Sbjct: 61  EVYSDAKDKAESWSNWAYDKISKGLGLSEE-ESKEKAHDGADK 100

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146505.11.0e-45100.00late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53307.1 hypotheti... [more]
XP_008452083.12.0e-3078.43PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044... [more]
XP_004146555.11.2e-2774.76late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypotheti... [more]
XP_008452082.13.4e-2572.82PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044... [more]
XP_038906272.14.3e-2063.11late embryogenesis abundant protein D-29 isoform X1 [Benincasa hispida][more]
BLAST of CsaV3_4G005630 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY194.9e-46100.00Late embryogenesis abundant OS=Cucumis sativus OX=3659 GN=Csa_4G046700 PE=4 SV=1[more]
A0A5A7TSE69.9e-3178.43Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BT319.9e-3178.43late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0KUJ56.0e-2874.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1[more]
A0A5D3D1U21.6e-2572.82Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of CsaV3_4G005630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005630.1CsaV3_4G005630.1mRNA