CsaV3_4G003320 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGAAAATAAGAATGTGTCTTTTCCTCATTCTTCTGGTTTTTCTCTTCATACTCCAACCAGTCCATCTAATTTTGATCAAAATTCAGTTACATTGGGTCCGAATATAGATGATAATTATAAGATGCCATTGGAGTTTTCTTCATGTAATTGGATAGATAATGCAAGGTTGGAGCAACTACCAGCGATGGAAGAGACTAGTTTGAGAAGGGTGAATCATGGTTTATCATTAACAAATCCCAACGGTAACTTTGAAACTACACAATATTACCCTTCTTTCCCTCAATTTAATGGTCTCAATGATAACTTTGAAACTCCACAATTTTACCATCCTTCTTATACTCAATTTAATGATCCCAACAATAACTACAACAACATGGGTGATGCTTTTCTTTGTTCTCCTTCTACTCTTTCAACAATGCATAACTCATCTAATGATTCTATTAGATATAATAATGGTTTTCTCTCTGATGTCGTCAATTCCAACTCCACTAAAACAACCATGACATTTGAAAACGGTTGTTCTTTTGACTCCAATTTGAATAATCCTTCTCTCTTTCATGATCCTCAAACATCACATTTTTGCTCTCCTTCCACTTTTTCAATGACTCATAATAATGGTCAATTTGCTGACTCCACTAGTTATACTGGTTTGCTTTCCGACATCCCTACCCAAATGATCAGACCACATGTTCCAACAATATCTTTGTCAACGACAAATTTGTTGCCATCGTCATCATTACCGCCACAACCGCTATTGTCACAAAACTCATTGAAGATAAGAAACAACTCCACAAATTGGAGCATAAGGGAGCACAAGTACGTATATAACAATACAAATATAATATATGCAACTCATCTAAGTTATTTACTAATACATACATATTATTGCAGATTATTTCTAGCAGGGATGCAACTTTTAGGCCAAGGTGCATGGAAAAAAATTGCAAACTACGTGGTGGTTACAAAAACACACACACAAGTGGCTAGTCATGCACAGAAGTACTTTCTTCGCCAGACCTCACAAAAGCATAAGAGGACAAGTATTCATGATATCACCACTGCCGAGCCTGAATTTTTTGCTCTAGCGGAATCACGTATAGCGCAACACATGAAGCATCTCAACAAAAATGATCAATAA ATGGCAGAAAATAAGAATGTGTCTTTTCCTCATTCTTCTGGTTTTTCTCTTCATACTCCAACCAGTCCATCTAATTTTGATCAAAATTCAGTTACATTGGGTCCGAATATAGATGATAATTATAAGATGCCATTGGAGTTTTCTTCATGTAATTGGATAGATAATGCAAGGTTGGAGCAACTACCAGCGATGGAAGAGACTAGTTTGAGAAGGGTGAATCATGGTTTATCATTAACAAATCCCAACGGTAACTTTGAAACTACACAATATTACCCTTCTTTCCCTCAATTTAATGGTCTCAATGATAACTTTGAAACTCCACAATTTTACCATCCTTCTTATACTCAATTTAATGATCCCAACAATAACTACAACAACATGGGTGATGCTTTTCTTTGTTCTCCTTCTACTCTTTCAACAATGCATAACTCATCTAATGATTCTATTAGATATAATAATGGTTTTCTCTCTGATGTCGTCAATTCCAACTCCACTAAAACAACCATGACATTTGAAAACGGTTGTTCTTTTGACTCCAATTTGAATAATCCTTCTCTCTTTCATGATCCTCAAACATCACATTTTTGCTCTCCTTCCACTTTTTCAATGACTCATAATAATGGTCAATTTGCTGACTCCACTAGTTATACTGGTTTGCTTTCCGACATCCCTACCCAAATGATCAGACCACATGTTCCAACAATATCTTTGTCAACGACAAATTTGTTGCCATCGTCATCATTACCGCCACAACCGCTATTGTCACAAAACTCATTGAAGATAAGAAACAACTCCACAAATTGGAGCATAAGGGAGCACAAATTATTTCTAGCAGGGATGCAACTTTTAGGCCAAGGTGCATGGAAAAAAATTGCAAACTACGTGGTGGTTACAAAAACACACACACAAGTGGCTAGTCATGCACAGAAGTACTTTCTTCGCCAGACCTCACAAAAGCATAAGAGGACAAGTATTCATGATATCACCACTGCCGAGCCTGAATTTTTTGCTCTAGCGGAATCACGTATAGCGCAACACATGAAGCATCTCAACAAAAATGATCAATAA ATGGCAGAAAATAAGAATGTGTCTTTTCCTCATTCTTCTGGTTTTTCTCTTCATACTCCAACCAGTCCATCTAATTTTGATCAAAATTCAGTTACATTGGGTCCGAATATAGATGATAATTATAAGATGCCATTGGAGTTTTCTTCATGTAATTGGATAGATAATGCAAGGTTGGAGCAACTACCAGCGATGGAAGAGACTAGTTTGAGAAGGGTGAATCATGGTTTATCATTAACAAATCCCAACGGTAACTTTGAAACTACACAATATTACCCTTCTTTCCCTCAATTTAATGGTCTCAATGATAACTTTGAAACTCCACAATTTTACCATCCTTCTTATACTCAATTTAATGATCCCAACAATAACTACAACAACATGGGTGATGCTTTTCTTTGTTCTCCTTCTACTCTTTCAACAATGCATAACTCATCTAATGATTCTATTAGATATAATAATGGTTTTCTCTCTGATGTCGTCAATTCCAACTCCACTAAAACAACCATGACATTTGAAAACGGTTGTTCTTTTGACTCCAATTTGAATAATCCTTCTCTCTTTCATGATCCTCAAACATCACATTTTTGCTCTCCTTCCACTTTTTCAATGACTCATAATAATGGTCAATTTGCTGACTCCACTAGTTATACTGGTTTGCTTTCCGACATCCCTACCCAAATGATCAGACCACATGTTCCAACAATATCTTTGTCAACGACAAATTTGTTGCCATCGTCATCATTACCGCCACAACCGCTATTGTCACAAAACTCATTGAAGATAAGAAACAACTCCACAAATTGGAGCATAAGGGAGCACAAATTATTTCTAGCAGGGATGCAACTTTTAGGCCAAGGTGCATGGAAAAAAATTGCAAACTACGTGGTGGTTACAAAAACACACACACAAGTGGCTAGTCATGCACAGAAGTACTTTCTTCGCCAGACCTCACAAAAGCATAAGAGGACAAGTATTCATGATATCACCACTGCCGAGCCTGAATTTTTTGCTCTAGCGGAATCACGTATAGCGCAACACATGAAGCATCTCAACAAAAATGATCAATAA MAENKNVSFPHSSGFSLHTPTSPSNFDQNSVTLGPNIDDNYKMPLEFSSCNWIDNARLEQLPAMEETSLRRVNHGLSLTNPNGNFETTQYYPSFPQFNGLNDNFETPQFYHPSYTQFNDPNNNYNNMGDAFLCSPSTLSTMHNSSNDSIRYNNGFLSDVVNSNSTKTTMTFENGCSFDSNLNNPSLFHDPQTSHFCSPSTFSMTHNNGQFADSTSYTGLLSDIPTQMIRPHVPTISLSTTNLLPSSSLPPQPLLSQNSLKIRNNSTNWSIREHKLFLAGMQLLGQGAWKKIANYVVVTKTHTQVASHAQKYFLRQTSQKHKRTSIHDITTAEPEFFALAESRIAQHMKHLNKNDQ* Homology
BLAST of CsaV3_4G003320 vs. NCBI nr
Match: KGN53075.1 (hypothetical protein Csa_014760 [Cucumis sativus]) HSP 1 Score: 717.2 bits (1850), Expect = 6.9e-203 Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. NCBI nr
Match: XP_011654326.2 (myb-like protein J [Cucumis sativus] >KAE8649106.1 hypothetical protein Csa_015417 [Cucumis sativus]) HSP 1 Score: 663.7 bits (1711), Expect = 9.0e-187 Identity = 332/357 (93.00%), Postives = 339/357 (94.96%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. NCBI nr
Match: KAA0044592.1 (myb-like protein J [Cucumis melo var. makuwa]) HSP 1 Score: 303.9 bits (777), Expect = 1.8e-78 Identity = 205/371 (55.26%), Postives = 243/371 (65.50%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. NCBI nr
Match: XP_008454484.1 (PREDICTED: myb-like protein J [Cucumis melo]) HSP 1 Score: 285.4 bits (729), Expect = 6.7e-73 Identity = 172/287 (59.93%), Postives = 206/287 (71.78%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. NCBI nr
Match: TYK16992.1 (myb-like protein J [Cucumis melo var. makuwa]) HSP 1 Score: 151.8 bits (382), Expect = 1.1e-32 Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 3.6e-13 Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy Swiss-Prot
Match: Q2V9B0 (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12 Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 6.8e-12 Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.5e-11 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 2.6e-11 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy TrEMBL
Match: A0A0A0KTY5 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G015160 PE=4 SV=1) HSP 1 Score: 717.2 bits (1850), Expect = 3.3e-203 Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy TrEMBL
Match: A0A0A0KYZ4 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G014580 PE=4 SV=1) HSP 1 Score: 668.3 bits (1723), Expect = 1.8e-188 Identity = 334/357 (93.56%), Postives = 340/357 (95.24%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy TrEMBL
Match: A0A5A7TMR3 (Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003420 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 8.8e-79 Identity = 205/371 (55.26%), Postives = 243/371 (65.50%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy TrEMBL
Match: A0A1S3BZH7 (myb-like protein J OS=Cucumis melo OX=3656 GN=LOC103494880 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 3.2e-73 Identity = 172/287 (59.93%), Postives = 206/287 (71.78%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. ExPASy TrEMBL
Match: A0A5D3CZL0 (Myb-like protein J OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001340 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 5.6e-33 Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 86.3 bits (212), Expect = 5.5e-17 Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 79.0 bits (193), Expect = 8.8e-15 Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. TAIR 10
Match: AT3G10580.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 77.0 bits (188), Expect = 3.4e-14 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. TAIR 10
Match: AT3G10580.2 (Homeodomain-like superfamily protein ) HSP 1 Score: 77.0 bits (188), Expect = 3.4e-14 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0
BLAST of CsaV3_4G003320 vs. TAIR 10
Match: AT1G74840.1 (Homeodomain-like superfamily protein ) HSP 1 Score: 76.6 bits (187), Expect = 4.4e-14 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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