CsaV3_4G001760 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G001760
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribonuclease 3-like protein 1
Location	chr4: 1014536 .. 1017320 (-)
RNA-Seq Expression	CsaV3_4G001760
Synteny	CsaV3_4G001760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACTATATATAATTACCCTTTTTTGTAAAGGAAATTGTAATGAGAGCAATTCAATGTTGATTGATTTGTCTATGGATGAATGTGTAATGAGAGTGTTATTCAGTTCTTTACCAATCCCCATGGAACCTTAACAATGGAATCACTTTTACTCTAAACCACAAATACACATAAACAAGAACAAGAAGAAGAACAACAACAAAGAACAAAACAAGAATTTATTATCACGGAGAAGTCTGACTCTGCACAAACTATCCCATTTCTTGGATTGTATTACAATAGTTTGAAATCTTTCTCTTCTTTCTTGCTCTGAAATTGATTGATGAGACACTACTCAGACATCGTCGGACCAGAGCGGAAGAATCGGGGAATTCAGATGGAGAACAATCCTTCTTGTCCTCCTCCAAGATTGAATATCAATCTCAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTATCTGGGAGTCACTCCTCGATTCCGGTAAAGCTCTGTTGATTTCCTGCGATTGTATTCGATCTTCTTTGGAATTTGAAACCCTTTTGATTTCCATGACTTGTTTCAGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATGCCGTCTGATCACCGGCCGGAAATAAGGTCGAATGATTACGCTGGCTTGCCGATGAAACTAGCGTATTCTGATTCCGCTCGAGCTCTGAATACGAAGACGTTTCCGGTGGCTCCGTCGGCGGATTCTTTCGTTCGAAAGAAAGATACTTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGACTCGACCAAAGAAGGTGCCTGTTTAAACCTAGTTCCTCAACTTCTTTGATTGTTGTTTGGAATTCGAGATAGATGATTCTTGTTATGTGTTATCATTTTCGGTGATTGTTGTTTTCTTCGTGATTTTATGATTTTCTTCTAGCAATTGATTGTTCAACTGAACTCACATGCATTTCATCATGAACATTTTATTTATCTCCTGTTTACCCCTAATCACTTCCCAATTAATTTCAAGGTGCAGTCTAAAAAAGAAAGAAAGAAAATGCCGGCATTTGGTCTCTAAAAATTTTCCAAAACAGAACTCTGGATCAAAACCATTTTCTGGATCATGTTTGAACAGCTTAGTTTCTTCCAATTTTTTCTCTCTTGTTTTTCTTTCAATTTTTCTCAGGATGACTTGTTTTCAATAATGAATGAAGTTGTGTATGAATGATAACATGCATTAGACTTCATAAATCATTCGATCACAATCCCTAGTGGTTTCTTGAGAGTTGTTTCTGAATTTATGTTTGTTTCCTTTCAATTTTTCAGTTATAATTTTTTGTTAGTCAGAGAAACACTCATCAAATTCTAAAATGAAAACGTTTTTGAAAACTATTTGTTTAGTTTTCAAAACTCTGACTTGTTTTATTTGAAATATTAATAGAAAGTGAATTACAAAAATAGAAACTTATGTGTGTTATTAGTACTTATAAACTTATGGTTATCAAATGACTTATAATTTATTACTCTCTTTCTCCAAAGAACAACTTATGATGCTCTGCTCTTGAGAGTTGTTCTTTGGAGTTGAGCTCTCTAAAGACTAGTGGGTTGAGTCATAAATCAGTTACTCAAACATGTTTATACCTTCTTTCCCCTTAATTAGAAAGATGGAATATAATTTTGCAAGCACATGAGCTTTTTCACTTTGATGGCTTACTTTATCTTCGTTTTATTTGGATGAGGAAGACTACTTATTGCCTCTCTGATTCCCATAAGCGTTGCCATGGCGCTTCAGAAATTTTGATTTGGACTACTCAAAGTTTGCTCTAATGGTTTGCCTTCACCCTTTTTCACTTTAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCAAGCCATGCAAAAAAGTAAGCTCAATATATAACTCTCATCAGCATAAGTTATAAACTTACAAAAACTCTTTGCTCAAGTAACCTGTCAGGGCCAAACTTTCAACGATACTTGGCTAAAGATGTATTCCTTATTATGCCTTTTGGTCTTGTAGATTATCCCCTCTTCTAACAACTACTTTTTGAAGAAAATTTGTTTTGTAAGTTGTGTACAACTCTGTTTCTTCTTTTTATATTCGAAACGGGTACGTACAATTAGATGCCACCATGGAGTCAGCTGATGAAGGTTTCTTGTTAGCTATGTTTGGATTTGACATGTCCATATAGCATTCTGTACTGTGCAAACATGAGCAAGAATATATAGATTGAATCGAAAGGAAAAACACACCCGAGCAAAGAATGAAATTAGTAACTAGCTTCATTTATGGAGAACAAGGATATTTGATGGGATTTTAACAATTGATGCAAAACTTTGATTTTGATTCAGGTATAGATTCAAGGTTAGAATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAGTGGCAGCAGAGCATGCAGCAGAAGGAGCATTATGGTACTTAAACCATTTGGGATATCGTTTTAAAAGATAATAATTAGGAATTGTAAAGAAACTTGAATTGAGAAATGGATAATGAGTAAAATCATCTTTCAGCCTAAACTCTTTTCATTCAATACAAAGCTTTTTCTCCACATCTACGTAAATAGAAAGACAAAATACTCCTAAACTCCCTACTTTACTTCAAAATATTCTTGGACTTCAATTTTTTTTTAG

mRNA sequence

ATGAGACACTACTCAGACATCGTCGGACCAGAGCGGAAGAATCGGGGAATTCAGATGGAGAACAATCCTTCTTGTCCTCCTCCAAGATTGAATATCAATCTCAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTATCTGGGAGTCACTCCTCGATTCCGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATGCCGTCTGATCACCGGCCGGAAATAAGGTCGAATGATTACGCTGGCTTGCCGATGAAACTAGCGTATTCTGATTCCGCTCGAGCTCTGAATACGAAGACGTTTCCGGTGGCTCCGTCGGCGGATTCTTTCGTTCGAAAGAAAGATACTTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGACTCGACCAAAGAAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCAAGCCATGCAAAAAAGTATAGATTCAAGGTTAGAATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAGTGGCAGCAGAGCATGCAGCAGAAGGAGCATTATGGTACTTAAACCATTTGGGATATCGTTTTAAAAGATAA

Coding sequence (CDS)

ATGAGACACTACTCAGACATCGTCGGACCAGAGCGGAAGAATCGGGGAATTCAGATGGAGAACAATCCTTCTTGTCCTCCTCCAAGATTGAATATCAATCTCAAAAATCTTCCTCCAATTAATAACCCGCGCAATGTATCTGGGAGTCACTCCTCGATTCCGGCTAAATTTGAGAAATCTAGGTATATTAGGCGCGTTCCTCAGTTTATGCCGTCTGATCACCGGCCGGAAATAAGGTCGAATGATTACGCTGGCTTGCCGATGAAACTAGCGTATTCTGATTCCGCTCGAGCTCTGAATACGAAGACGTTTCCGGTGGCTCCGTCGGCGGATTCTTTCGTTCGAAAGAAAGATACTTGCAAGGATTTAGCTTCGAGGTGTAGTTGTTGCAGACATGACTCGACCAAAGAAGGTACTCCAGAAAAGAGAGCGGCAAAGTCCCTTCTATTTGAGATATGCACTGCAAATCACTGGCAGCCTCCTCTATTTGAATGCTGTGAAGAAGAAGGTCCAAGCCATGCAAAAAAGTATAGATTCAAGGTTAGAATTGAAATGAAGGGAGATTGTGAAGCAGTTGTGGAATGCTATGGAAACCTTCAAACAAGAAAGAAAGTGGCAGCAGAGCATGCAGCAGAAGGAGCATTATGGTACTTAAACCATTTGGGATATCGTTTTAAAAGATAA

Protein sequence

MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR*

Homology

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BLAST of CsaV3_4G001760 vs. NCBI nr
Match: XP_004152191.1 (uncharacterized protein LOC101212514 [Cucumis sativus] >KGN52916.1 hypothetical protein Csa_014441 [Cucumis sativus])

HSP 1 Score: 478.8 bits (1231), Expect = 2.6e-131
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS 60
           MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS
Sbjct: 1   MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS 60

Query: 61  RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC 120
           RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC
Sbjct: 61  RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC 120

Query: 121 KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK 180
           KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK
Sbjct: 121 KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK 180

Query: 181 VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR
Sbjct: 181 VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 227

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BLAST of CsaV3_4G001760 vs. NCBI nr
Match: XP_008454206.1 (PREDICTED: uncharacterized protein LOC103494682 isoform X1 [Cucumis melo] >KAA0044459.1 ribonuclease 3-like protein 1 [Cucumis melo var. makuwa] >TYK29586.1 ribonuclease 3-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 8.5e-114
Identity = 204/229 (89.08%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSC PPRLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSC-PPRLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60

Query: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120

Query: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYR 180
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYR
Sbjct: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYR 180

Query: 181 FKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           FKV IEMKGDCEAVVECYGNLQTRKK+AAEHAAEGALWYL +LGYRF+R
Sbjct: 181 FKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

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BLAST of CsaV3_4G001760 vs. NCBI nr
Match: XP_038878769.1 (ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida] >XP_038878776.1 ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 340.9 bits (873), Expect = 8.6e-90
Identity = 172/223 (77.13%), Postives = 188/223 (84.30%), Query Frame = 0


Query: 5   SDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRYIR 64
           ++IV  ERKNRG QMEN  SC P RLN NLKNLPPINN    +G+HSSI AKFEKSRYIR
Sbjct: 4   TEIVEAERKNRGNQMENTHSC-PRRLNFNLKNLPPINNSLIGTGNHSSISAKFEKSRYIR 63

Query: 65  RVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKDLA 124
           RVPQF+P +HRP    N+YAGLPMK A S SARALN+KT P APS DSFV+KKD  +++A
Sbjct: 64  RVPQFIPQNHRP----NEYAGLPMKPACSGSARALNSKTIPEAPS-DSFVQKKDNSQEIA 123

Query: 125 SRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIE 184
           SR SCC H STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKV +E
Sbjct: 124 SRSSCCGHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVTVE 183

Query: 185 MKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           MKG  E V+ECYGNLQTRKKVAAEHAAEGA+WYL +LGY FKR
Sbjct: 184 MKGASETVLECYGNLQTRKKVAAEHAAEGAIWYLKNLGYCFKR 220

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BLAST of CsaV3_4G001760 vs. NCBI nr
Match: XP_038878793.1 (ribonuclease 3-like protein 1 isoform X3 [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 8.3e-85
Identity = 163/209 (77.99%), Postives = 177/209 (84.69%), Query Frame = 0


Query: 19  MENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRYIRRVPQFMPSDHRPEI 78
           MEN  SC P RLN NLKNLPPINN    +G+HSSI AKFEKSRYIRRVPQF+P +HRP  
Sbjct: 1   MENTHSC-PRRLNFNLKNLPPINNSLIGTGNHSSISAKFEKSRYIRRVPQFIPQNHRP-- 60

Query: 79  RSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKDLASRCSCCRHDSTKEG 138
             N+YAGLPMK A S SARALN+KT P APS DSFV+KKD  +++ASR SCC H STKEG
Sbjct: 61  --NEYAGLPMKPACSGSARALNSKTIPEAPS-DSFVQKKDNSQEIASRSSCCGHGSTKEG 120

Query: 139 TPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVECYGN 198
           TPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKV +EMKG  E V+ECYGN
Sbjct: 121 TPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVTVEMKGASETVLECYGN 180

Query: 199 LQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           LQTRKKVAAEHAAEGA+WYL +LGY FKR
Sbjct: 181 LQTRKKVAAEHAAEGAIWYLKNLGYCFKR 203

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BLAST of CsaV3_4G001760 vs. NCBI nr
Match: XP_038878786.1 (ribonuclease 3-like protein 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 324.3 bits (830), Expect = 8.3e-85
Identity = 164/212 (77.36%), Postives = 179/212 (84.43%), Query Frame = 0


Query: 5   SDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRYIR 64
           ++IV  ERKNRG QMEN  SC P RLN NLKNLPPINN    +G+HSSI AKFEKSRYIR
Sbjct: 4   TEIVEAERKNRGNQMENTHSC-PRRLNFNLKNLPPINNSLIGTGNHSSISAKFEKSRYIR 63

Query: 65  RVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKDLA 124
           RVPQF+P +HRP    N+YAGLPMK A S SARALN+KT P APS DSFV+KKD  +++A
Sbjct: 64  RVPQFIPQNHRP----NEYAGLPMKPACSGSARALNSKTIPEAPS-DSFVQKKDNSQEIA 123

Query: 125 SRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIE 184
           SR SCC H STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKV +E
Sbjct: 124 SRSSCCGHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVTVE 183

Query: 185 MKGDCEAVVECYGNLQTRKKVAAEHAAEGALW 217
           MKG  E V+ECYGNLQTRKKVAAEHAAEGA+W
Sbjct: 184 MKGASETVLECYGNLQTRKKVAAEHAAEGAIW 209

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BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot
Match: P84634 (Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-22
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 136  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVEC 195
            K G P  + AKSLL E C AN W+PP FECCEEEGP H K + +KV +E++      +EC
Sbjct: 1613 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1672

Query: 196  YGNLQTRKKVAAEHAAEGALWYLNHLGY 224
            YG  +  KK AAEHAA+ A+W L H G+
Sbjct: 1673 YGEARATKKGAAEHAAQAAIWCLKHSGF 1700

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BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot
Match: A7LFZ6 (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.7e-21
Identity = 41/81 (50.62%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 143  RAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVECYGNLQTR 202
            + A+S LFE+C AN+W+PP F+ C+EEGPSH +K+ +KV +E+KG    ++EC+ + + +
Sbjct: 1568 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1627

Query: 203  KKVAAEHAAEGALWYLNHLGY 224
            KK A EHAA+GALW L  LG+
Sbjct: 1628 KKAAQEHAAQGALWCLKQLGH 1648

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot
Match: Q9M8N2 (Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.7e-20
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 137 EGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDC-EAVVEC 196
           E    + +AKS+L E+C +  W+PP++ECC  +GP H + + +KV +E++    + V+EC
Sbjct: 107 ESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLEC 166

Query: 197 YGNLQTRKKVAAEHAAEGALWYLNHL 222
           +G+ + +KK AAEHAAEGALWYL H+
Sbjct: 167 FGDPRRKKKAAAEHAAEGALWYLEHV 192

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot
Match: Q9SP32 (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-05
Identity = 38/142 (26.76%), Postives = 60/142 (42.25%), Query Frame = 0


Query: 78   IRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKDLASRCSCCRHDSTKE 137
            +  N    +  KLA  ++  AL  K   +A S +  +   +  +D         + + K 
Sbjct: 1773 VAQNPQKKMAQKLAARNALAALKEK--EIAESKEKHINNGNAGEDQGEN----ENGNKKN 1832

Query: 138  GTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVECYG 197
            G   +   +  L +IC   +W  P + C +E GP+HAK++ F VR+    D     EC G
Sbjct: 1833 G--HQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVN-TSDRGWTDECIG 1892

Query: 198  NLQTRKKVAAEHAAEGALWYLN 220
                  K A + AA   L  LN
Sbjct: 1893 EPMPSVKKAKDSAAVLLLELLN 1905

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BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot
Match: Q9FKF0 (Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04
Identity = 23/63 (36.51%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 149 LFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVECYGNLQTRKKVAAE 208
           L EICT N W  P+F   EE+GP +  K+   V+IE+  + E      G+++++KK A  
Sbjct: 312 LIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIP-NIEGTFHMKGDIKSKKKQAEN 371

Query: 209 HAA 212
             A
Sbjct: 372 SLA 373

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BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL
Match: A0A0A0KYI7 (DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.3e-131
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS 60
           MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS
Sbjct: 1   MRHYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKS 60

Query: 61  RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC 120
           RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC
Sbjct: 61  RYIRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTC 120

Query: 121 KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK 180
           KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK
Sbjct: 121 KDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFK 180

Query: 181 VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR
Sbjct: 181 VRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 227

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL
Match: A0A5D3E0Z9 (Ribonuclease 3-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001930 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 204/229 (89.08%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSC PPRLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSC-PPRLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60

Query: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120

Query: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYR 180
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYR
Sbjct: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYR 180

Query: 181 FKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           FKV IEMKGDCEAVVECYGNLQTRKK+AAEHAAEGALWYL +LGYRF+R
Sbjct: 181 FKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL
Match: A0A1S3BXK0 (uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.1e-114
Identity = 204/229 (89.08%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSC PPRLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSC-PPRLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60

Query: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120

Query: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYR 180
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+KYR
Sbjct: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARKYR 180

Query: 181 FKVRIEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGYRFKR 228
           FKV IEMKGDCEAVVECYGNLQTRKK+AAEHAAEGALWYL +LGYRF+R
Sbjct: 181 FKVSIEMKGDCEAVVECYGNLQTRKKMAAEHAAEGALWYLKNLGYRFER 228

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL
Match: A0A1S4DZP1 (uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494682 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 158/178 (88.76%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MRHYSDIVGPERKNRGIQME-NNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEK 60
           MRHY++IVG ERKNRGIQME NNPSC PPRLNINLKNLPPINNPRNV+G+HSSIPAKFEK
Sbjct: 1   MRHYTEIVGAERKNRGIQMEKNNPSC-PPRLNINLKNLPPINNPRNVTGTHSSIPAKFEK 60

Query: 61  SRYIRRVPQFMPSDHRPEIRSNDYAGLP-MKLAYSDSARALNTKTFPVAPSADSFVRKKD 120
           SRYIRRVPQF+P DHRPEIRSN+Y GLP MKLA SDSARA+NTKT PVAPSAD FV+KKD
Sbjct: 61  SRYIRRVPQFIPFDHRPEIRSNNYPGLPAMKLACSDSARAMNTKTIPVAPSADYFVQKKD 120

Query: 121 TCKDLASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKK 177
            CKDLASRCSCCRH STKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHA+K
Sbjct: 121 NCKDLASRCSCCRHGSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHARK 177

[Close]

BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL
Match: A0A6J1GW48 (ribonuclease 3-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458030 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 9.0e-77
Identity = 147/221 (66.52%), Postives = 169/221 (76.47%), Query Frame = 0


Query: 3   HYSDIVGPERKNRGIQMENNPSCPPPRLNINLKNLPPINNPRNVSGSHSSIPAKFEKSRY 62
           HY +IVG ERKNR  QMEN PSC P  +N+NLKNLPPI+NP   + +HSSIPAKFEKSRY
Sbjct: 6   HYREIVGEERKNRENQMENTPSC-PRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRY 65

Query: 63  IRRVPQFMPSDHRPEIRSNDYAGLPMKLAYSDSARALNTKTFPVAPSADSFVRKKDTCKD 122
           I RVPQFMP +H P++R N+Y G+PM  A  DSAR+ N +T P          +K+   D
Sbjct: 66  IGRVPQFMPPNHSPDVRPNEYDGVPMNPACFDSARSPNARTTP--------KERKENFGD 125

Query: 123 LASRCSCCRHDSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVR 182
            ASR S C HDSTKEGT  K++AKSLL+EICTANHW+PPLFECCEEEGPSHAKKY FKV 
Sbjct: 126 SASRSSGCSHDSTKEGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKKYTFKVI 185

Query: 183 IEMKGDCEAVVECYGNLQTRKKVAAEHAAEGALWYLNHLGY 224
           +EMKGDC   +ECYG  QTRKKVAAE AAEGA+WYL HLGY
Sbjct: 186 VEMKGDCGEDLECYGKPQTRKKVAAEDAAEGAVWYLKHLGY 217

[Close]

BLAST of CsaV3_4G001760 vs. TAIR 10
Match: AT5G20320.1 (dicer-like 4 )

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-23
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 136  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVEC 195
            K G P  + AKSLL E C AN W+PP FECCEEEGP H K + +KV +E++      +EC
Sbjct: 1613 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1672

Query: 196  YGNLQTRKKVAAEHAAEGALWYLNHLGY 224
            YG  +  KK AAEHAA+ A+W L H G+
Sbjct: 1673 YGEARATKKGAAEHAAQAAIWCLKHSGF 1700

[Close]

BLAST of CsaV3_4G001760 vs. TAIR 10
Match: AT5G20320.2 (dicer-like 4 )

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-23
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 136  KEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCEAVVEC 195
            K G P  + AKSLL E C AN W+PP FECCEEEGP H K + +KV +E++      +EC
Sbjct: 1599 KAGGPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLEC 1658

Query: 196  YGNLQTRKKVAAEHAAEGALWYLNHLGY 224
            YG  +  KK AAEHAA+ A+W L H G+
Sbjct: 1659 YGEARATKKGAAEHAAQAAIWCLKHSGF 1686

[Close]

BLAST of CsaV3_4G001760 vs. TAIR 10
Match: AT1G80650.1 (RNAse THREE-like protein 1 )

HSP 1 Score: 98.6 bits (244), Expect = 6.9e-21
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 137 EGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDC-EAVVEC 196
           E    + +AKS+L E+C +  W+PP++ECC  +GP H + + +KV +E++    + V+EC
Sbjct: 107 ESKTRRGSAKSVLHEMCASKRWRPPVYECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLEC 166

Query: 197 YGNLQTRKKVAAEHAAEGALWYLNHL 222
           +G+ + +KK AAEHAAEGALWYL H+
Sbjct: 167 FGDPRRKKKAAAEHAAEGALWYLEHV 192

[Close]

BLAST of CsaV3_4G001760 vs. TAIR 10
Match: AT4G00420.2 (Double-stranded RNA-binding domain (DsRBD)-containing protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 133 DSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCE-A 192
           + T E   ++ +AKS L+ +C+  HW+ PL+E    EGP H K +  KV +EMK D    
Sbjct: 73  EPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRIT 132

Query: 193 VVECYGNLQTRKKVAAEHAAEGALWYLNHLGY 224
           V+EC+GN Q +KK+AAE AAE ALWYL ++GY
Sbjct: 133 VLECFGNPQYKKKIAAEQAAEAALWYLKNVGY 163

[Close]

BLAST of CsaV3_4G001760 vs. TAIR 10
Match: AT4G00420.3 (Double-stranded RNA-binding domain (DsRBD)-containing protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 133 DSTKEGTPEKRAAKSLLFEICTANHWQPPLFECCEEEGPSHAKKYRFKVRIEMKGDCE-A 192
           + T E   ++ +AKS L+ +C+  HW+ PL+E    EGP H K +  KV +EMK D    
Sbjct: 51  EPTTEEETQRSSAKSQLYNLCSVRHWKAPLYEYI-AEGPCHMKIFTGKVTVEMKEDSRIT 110

Query: 193 VVECYGNLQTRKKVAAEHAAEGALWYLNHLGY 224
           V+EC+GN Q +KK+AAE AAE ALWYL ++GY
Sbjct: 111 VLECFGNPQYKKKIAAEQAAEAALWYLKNVGY 141

The following BLAST results are available for this feature:

BLAST of CsaV3_4G001760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152191.1	2.6e-131	100.00	uncharacterized protein LOC101212514 [Cucumis sativus] >KGN52916.1 hypothetical ...	[more]
XP_008454206.1	8.5e-114	89.08	PREDICTED: uncharacterized protein LOC103494682 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_038878769.1	8.6e-90	77.13	ribonuclease 3-like protein 1 isoform X1 [Benincasa hispida] >XP_038878776.1 rib...	[more]
XP_038878793.1	8.3e-85	77.99	ribonuclease 3-like protein 1 isoform X3 [Benincasa hispida]	[more]
XP_038878786.1	8.3e-85	77.36	ribonuclease 3-like protein 1 isoform X2 [Benincasa hispida]	[more]

BLAST of CsaV3_4G001760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P84634	3.6e-22	52.27	Dicer-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=DCL4 PE=1 SV=2	[more]
A7LFZ6	6.7e-21	50.62	Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]
Q9M8N2	9.7e-20	45.35	Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RTL1 PE=2 SV=1	[more]
Q9SP32	6.7e-05	26.76	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV...	[more]
Q9FKF0	3.3e-04	36.51	Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RTL3 PE=2 SV=1	[more]

BLAST of CsaV3_4G001760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI7	1.3e-131	100.00	DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006230 PE=4 S...	[more]
A0A5D3E0Z9	4.1e-114	89.08	Ribonuclease 3-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BXK0	4.1e-114	89.08	uncharacterized protein LOC103494682 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZP1	1.5e-84	88.76	uncharacterized protein LOC103494682 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GW48	9.0e-77	66.52	ribonuclease 3-like protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsaV3_4G001760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20320.1	2.5e-23	52.27	dicer-like 4	[more]
AT5G20320.2	2.5e-23	52.27	dicer-like 4	[more]
AT1G80650.1	6.9e-21	45.35	RNAse THREE-like protein 1	[more]
AT4G00420.2	2.9e-19	47.83	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]
AT4G00420.3	2.9e-19	47.83	Double-stranded RNA-binding domain (DsRBD)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 145..219 e-value: 2.1E-8 score: 43.9
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 144..220 score: 9.513474
None	No IPR available	GENE3D	3.30.160.20		coord: 151..220 e-value: 4.6E-21 score: 77.1
None	No IPR available	PFAM	PF14709	DND1_DSRM	coord: 145..218 e-value: 1.6E-14 score: 54.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR14950:SF67	DOUBLE-STRANDED RNA-BINDING DOMAIN (DSRBD)-CONTAINING PROTEIN	coord: 11..227
None	No IPR available	PANTHER	PTHR14950	DICER-RELATED	coord: 11..227
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 145..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G001760.1	CsaV3_4G001760.1	mRNA