CsaV3_3G042620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G042620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DEAD-box ATP-dependent RNA helicase 46
Location	chr3: 34598248 .. 34599857 (+)
RNA-Seq Expression	CsaV3_3G042620
Synteny	CsaV3_3G042620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTGATTTTCCAAACTTGATTGCTCTATCTCCTGGAAACCTTGGTTAAGTGGAGAAAATTATAGCCTTTCAATCTTACACTTAGTTCAAAATGTTTCTTCGAGGTCTGCTAATAGTATTTTCACGTTGCTGCGGTTTGGTTATTGCTTTGCATATTTTTAAAGAAAAGTTATTCTAGTTGTTTATATGGGATTTGCATGGTAATCTCATCTTGTTCTCTGTATTTTTTTTCTCAGTCGTCGAGTTACATATCTTCTGTTCATCGTTATGGCGGCTACTGCTACTGCTGTCTCTGTTGGTCCACGATATGCACCAGAAGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGGAAAACGGGGTATCTTTACTTCTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCATCGGGCCACTCTTATAATAATAATTTGAATGAAAACAACGATAAGTACGGAAGAGGTTCCCATGCACCCAAACAAGAGGTAGAGTGAAAAATACAAATCGTAGATTTTTTTTTAACTAACCCCTTCTATACACTGTGTCTACCCTTTAGAATGTTCCTCTGCGATCCTTCTGCCACTGAATTTTTTTAAAGGACTCTAGCATCTTTTGATTTGGGTTTAGAAACAGAGAGAATTACAACTTTTGGTTTTACTTCTGTATTCTGATTCCATCTTGCTTGCATGCGCCATTGTAATATTATGTATGGTTTAGTATTATTATCTAAAAACTCAACTATAGTTTATAAACTAAAATGAAAAGTTCTGCTAACTCATTTCCTTGTTCACATGATACGTCAGGTTGCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAATACTGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAATGGTATATCTGCTGAGTCTTATCGTCAACGACATGAAATAACTTTTTCGGTGAGTGCACTGTTATTATTGGGTTATTAGAATGTATTCCTGGCATTATCGTGATCGCTATTCACTTGAAATTTACCTCTATTTTCTGAATACAAATTTTTCTTGATGTTCATTTTTTTTCTTCTATTAGAATTGACTGTTCTGTTAATTGTTTTCTAGGGAGATAATGTGCCGGCACCATTCTCATCATTTGAAGCCACCGGTTTCCCACCTGAGATTCTTAGGGAGGTATTAATTTCCACCTTTTCCTTTGCCTTTGTTGATTTCAATCTTTCTTTGTAGATTAGCCATGGCTGACAATTCTGTAGGCATGCTCAGCTATATAAAACAAAATTTTCTGCTGAAAGTTAAGTGGTTGCTGGGGTCATGTTAATTCTTTTTGTCACCTGTACTTTTTTGTCGCAGGTGCGATATTTGCTCCTGGGAGGAGCTAATGTCGTACGCTGTGGTGCCCTCTTTGTTTTGGGGGCTTGCTTTAATTTGGAGTGCCCTTTTATGGTGGACCAATTTCTGGGAAGGGCTTTCCGAATCACCCATATTTGCAGCCGGGACTGCCGTTGGTGA

mRNA sequence

ATGTTGGCTGATTTTCCAAACTTGATTGCTCTATCTCCTGGAAACCTTGTTCAAAATGTTTCTTCGAGGTCTGCTAATAGTATTTTCACGTTGCTGCGTCGTCGAGTTACATATCTTCTGTTCATCGTTATGGCGGCTACTGCTACTGCTGTCTCTGTTGGTCCACGATATGCACCAGAAGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGGAAAACGGGGTATCTTTACTTCTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCATCGGGCCACTCTTATAATAATAATTTGAATGAAAACAACGATAAGTACGGAAGAGGTTCCCATGCACCCAAACAAGAGGTTGCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAATACTGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAATGGTATATCTGCTGAGTCTTATCGTCAACGACATGAAATAACTTTTTCGGGAGATAATGTGCCGGCACCATTCTCATCATTTGAAGCCACCGGTTTCCCACCTGAGATTCTTAGGGAGGTGCGATATTTGCTCCTGGGAGGAGCTAATGTCGTACGCTGTGGTGCCCTCTTTGTTTTGGGGGCTTGCTTTAATTTGGAGTGCCCTTTTATGGTGGACCAATTTCTGGGAAGGGCTTTCCGAATCACCCATATTTGCAGCCGGGACTGCCGTTGGTGA

Coding sequence (CDS)

ATGTTGGCTGATTTTCCAAACTTGATTGCTCTATCTCCTGGAAACCTTGTTCAAAATGTTTCTTCGAGGTCTGCTAATAGTATTTTCACGTTGCTGCGTCGTCGAGTTACATATCTTCTGTTCATCGTTATGGCGGCTACTGCTACTGCTGTCTCTGTTGGTCCACGATATGCACCAGAAGATCCAACCCTTCCCAAACCATGGAGAGGTTTAGTTGATGGGAAAACGGGGTATCTTTACTTCTGGAATCCGGAAACTAATGTCACCCAATACGAGAGACCTGTGGCTGCTGCTCCTCTTAATTCATCAATAGTGTCCATAAGTTCTTCCGTTCAAATTCAAAAGCCATCATCGGGCCACTCTTATAATAATAATTTGAATGAAAACAACGATAAGTACGGAAGAGGTTCCCATGCACCCAAACAAGAGGTTGCAAGGGGTGAAACCTTTCAATCACATGATACCTCAAATGGAACACCTAATACTGGGCATGGAGGAGCACCGTTGAAAGGACACAGACCATCAGATGCAGGAAATGGTATATCTGCTGAGTCTTATCGTCAACGACATGAAATAACTTTTTCGGGAGATAATGTGCCGGCACCATTCTCATCATTTGAAGCCACCGGTTTCCCACCTGAGATTCTTAGGGAGGTGCGATATTTGCTCCTGGGAGGAGCTAATGTCGTACGCTGTGGTGCCCTCTTTGTTTTGGGGGCTTGCTTTAATTTGGAGTGCCCTTTTATGGTGGACCAATTTCTGGGAAGGGCTTTCCGAATCACCCATATTTGCAGCCGGGACTGCCGTTGGTGA

Protein sequence

MLADFPNLIALSPGNLVQNVSSRSANSIFTLLRRRVTYLLFIVMAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVRYLLLGGANVVRCGALFVLGACFNLECPFMVDQFLGRAFRITHICSRDCRW*

Homology

[Close]

BLAST of CsaV3_3G042620 vs. NCBI nr
Match: KAE8651258.1 (hypothetical protein Csa_002550 [Cucumis sativus])

HSP 1 Score: 548.5 bits (1412), Expect = 3.2e-152
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 1   MLADFPNLIALSPGNLVQNVSSRSANSIFTLLRRRVTYLLFIVMAATATAVSVGPRYAPE 60
           MLADFPNLIALSPGNLVQNVSSRSANSIFTLLRRRVTYLLFIVMAATATAVSVGPRYAPE
Sbjct: 1   MLADFPNLIALSPGNLVQNVSSRSANSIFTLLRRRVTYLLFIVMAATATAVSVGPRYAPE 60

Query: 61  DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQKPSSGH 120
           DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQKPSSGH
Sbjct: 61  DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVSISSSVQIQKPSSGH 120

Query: 121 SYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNG 180
           SYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNG
Sbjct: 121 SYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGGAPLKGHRPSDAGNG 180

Query: 181 ISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVRYLLLGGANVVRCGALFVLGA 240
           ISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVRYLLLGGANVVRCGALFVLGA
Sbjct: 181 ISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVRYLLLGGANVVRCGALFVLGA 240

Query: 241 CFNLECPFMVDQFLGRAFRITHICSRDCRW 271
           CFNLECPFMVDQFLGRAFRITHICSRDCRW
Sbjct: 241 CFNLECPFMVDQFLGRAFRITHICSRDCRW 270

[Close]

BLAST of CsaV3_3G042620 vs. NCBI nr
Match: XP_011652287.1 (DEAD-box ATP-dependent RNA helicase 46 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 3.6e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTG 163
           IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTG
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTG 120

Query: 164 HGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           HGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV
Sbjct: 121 HGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 176

[Close]

BLAST of CsaV3_3G042620 vs. NCBI nr
Match: KAG7017771.1 (DEAD-box ATP-dependent RNA helicase 46, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.0 bits (920), Expect = 3.6e-95
Identity = 180/197 (91.37%), Postives = 185/197 (93.91%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSH-APKQEVARGETFQSHDTSNGTPNT 163
           IVSISSSVQ+QKPSSGHSY NNLNE+NDKYGR SH  PK EVARGETFQSHDT NG  +T
Sbjct: 61  IVSISSSVQVQKPSSGHSYGNNLNESNDKYGRVSHGVPKHEVARGETFQSHDTLNGISST 120

Query: 164 GHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVRYL 223
           GHGGA LKGHRPSDAG+ +SAESYRQRHEITFSGDNVP PFSSFEATGFPPEILREVRYL
Sbjct: 121 GHGGASLKGHRPSDAGSCLSAESYRQRHEITFSGDNVPPPFSSFEATGFPPEILREVRYL 180

Query: 224 LLGGANVVRCGALFVLG 240
           LLGGANVVRCGALFV G
Sbjct: 181 LLGGANVVRCGALFVWG 197

[Close]

BLAST of CsaV3_3G042620 vs. NCBI nr
Match: XP_038903376.1 (DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903378.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903379.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903380.1 DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida])

HSP 1 Score: 343.6 bits (880), Expect = 1.6e-90
Identity = 168/176 (95.45%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTG 163
           IVSISSSVQI+KPSSGHSY+NNLNENNDKYGRGSHAPKQEVARGETFQSHD+SNGTP+TG
Sbjct: 61  IVSISSSVQIEKPSSGHSYSNNLNENNDKYGRGSHAPKQEVARGETFQSHDSSNGTPSTG 120

Query: 164 HGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           HG A LKGHRPSDAGNG+SAESYRQRHEITFSGDNVP PFSSFEATGFPPEILREV
Sbjct: 121 HGRATLKGHRPSDAGNGLSAESYRQRHEITFSGDNVPPPFSSFEATGFPPEILREV 176

[Close]

BLAST of CsaV3_3G042620 vs. NCBI nr
Match: KAA0053652.1 (DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 2.0e-90
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN---GTP 163
           IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN   G P
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGIHGAP 120

Query: 164 NTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           +TGHGGAPLKGH+PSDAG+G+SA+SYRQRHEITFSGDNVPAPFSSFE TGFPPEILREV
Sbjct: 121 STGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFSGDNVPAPFSSFEVTGFPPEILREV 179

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot
Match: Q9LYJ9 (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 3.3e-43
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPK-------QEVARGETFQSHDTS 163
            + +SSSVQ  + SS      N  + +DKYGRGS  PK        E  R     S+D +
Sbjct: 61  AIPVSSSVQTNQQSSS---GFNSGKEDDKYGRGSDGPKSDSGSRFNEAGRTGPISSNDAA 120

Query: 164 NGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEIL 220
           +G  N   GG+  +G   S AGN +S E+Y ++HEIT SG  VP P  SFEATG P E+L
Sbjct: 121 SGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELL 176

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot
Match: Q8H136 (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 4.7e-37
Identity = 93/180 (51.67%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 103
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 104 SIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQ--EVARGETFQSHDTSNGTP 163
             VS+SSSVQ+Q+  +         +++DKY RGS    +  E  R     S+  +NG  
Sbjct: 61  PAVSVSSSVQVQQTDAYAP-----PKDDDKYSRGSERVSRFSEGGRSGPPYSNGAANGVG 120

Query: 164 NTGHGGAPLKGHRPSDA-GNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           ++ +G A  +   PS A  + +S E+Y +RHEIT SG  VP P  SFEATGFPPE+LREV
Sbjct: 121 DSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot
Match: P46942 (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 8.8e-36
Identity = 89/179 (49.72%), Postives = 115/179 (64.25%), Query Frame = 0


Query: 46  ATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPV-----AAAPL 105
           A  TA S GP YAPEDPTLPKPW+GLVDG TG++YFWNPETN TQYERPV      +AP 
Sbjct: 2   AVVTASSAGPSYAPEDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPVPSSHAVSAPA 61

Query: 106 NSSIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTP 165
           + S V +SSSV  +KPS G  Y+ +   N     RGS+    ++AR  + + HD      
Sbjct: 62  HKSSVFVSSSV--EKPSQGQRYDADGGHN-----RGSN---NKIARSSSDRFHD------ 121

Query: 166 NTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
               G +  +G+     G+ IS ESY +R+EI+ +G +VPAP +SFEATGFP EI+RE+
Sbjct: 122 ----GTSVHEGYGSLGVGSDISQESYCRRNEISVTGGDVPAPLTSFEATGFPSEIVREM 160

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot
Match: Q5VQL1 (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-31
Identity = 81/196 (41.33%), Postives = 108/196 (55.10%), Query Frame = 0


Query: 45  AATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVA-------- 104
           AA A A + GPRYAP DPTLPKPWRGL+DG TGYLYFWNPET   QY+RP A        
Sbjct: 4   AAAAAATARGPRYAPPDPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSSPPA 63

Query: 105 ---------AAPLNSSIVSISSSVQIQKPSSGHSYNNNLNENNDK--YGRGSHAPKQEVA 164
                    + P  S   + +S  Q   P+   + N++LN++ ++     GSHA      
Sbjct: 64  QQPPERPRNSDPAESQAQAGASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNVPFT 123

Query: 165 RGETFQSHDTSNGTPNTGHGGAPLKG-HRPSDAGNGISAESYRQRHEITFSGDNVPAPFS 221
              T       +  P +  G  P +     + +G+  S E+YR +HEIT  G+  PAPF 
Sbjct: 124 EQNT---RSNPSSQPCSAAGVYPAQNVFSEAASGDRTSPEAYRAKHEITIVGNEAPAPFM 183

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot
Match: Q5JKF2 (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 74/179 (41.34%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 47  TATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSSIVS 106
           +A      PRYAP+DP+LPKPWRGLVDG TGYLY+WNPETN+TQYE+P+           
Sbjct: 2   SAGTAPAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPED------Q 61

Query: 107 ISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTGHGG 166
           +     +  P       +   +  D+  R    P+++       +  D      +  H  
Sbjct: 62  LPPPPPLPPPPPRSGRGDRDRDRRDR-SRSRTPPRRD------HRDRDRDRDRRHDDHRS 121

Query: 167 APLKGHRPSDAGNGISA-----ESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVR 221
           AP   H P  A   I+A     E+YR RHEIT  GDNVPAP +SFE  GFPPEIL+E++
Sbjct: 122 AP-SHHHPLPAAAAIAADDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQ 166

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL
Match: A0A0A0LG68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838660 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.7e-101
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 32  LRRRVTYLLFIVMAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQY 91
           L RRVTYLLFIVMAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQY
Sbjct: 51  LSRRVTYLLFIVMAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQY 110

Query: 92  ERPVAAAPLNSSIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQ 151
           ERPVAAAPLNSSIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQ
Sbjct: 111 ERPVAAAPLNSSIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQ 170

Query: 152 SHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGF 211
           SHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGF
Sbjct: 171 SHDTSNGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGF 230

Query: 212 PPEILREV 220
           PPEILREV
Sbjct: 231 PPEILREV 238

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL
Match: A0A5A7UCZ5 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G00230 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.9e-91
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN---GTP 163
           IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN   G P
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGIHGAP 120

Query: 164 NTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           +TGHGGAPLKGH+PSDAG+G+SA+SYRQRHEITFSGDNVPAPFSSFE TGFPPEILREV
Sbjct: 121 STGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFSGDNVPAPFSSFEVTGFPPEILREV 179

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL
Match: A0A5D3BM24 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00240 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.9e-91
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN---GTP 163
           IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN   G P
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGIHGAP 120

Query: 164 NTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           +TGHGGAPLKGH+PSDAG+G+SA+SYRQRHEITFSGDNVPAPFSSFE TGFPPEILREV
Sbjct: 121 STGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFSGDNVPAPFSSFEVTGFPPEILREV 179

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL
Match: A0A1S3B7U1 (DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo OX=3656 GN=LOC103487108 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.9e-91
Identity = 169/179 (94.41%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN---GTP 163
           IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSN   G P
Sbjct: 61  IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGIHGAP 120

Query: 164 NTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           +TGHGGAPLKGH+PSDAG+G+SA+SYRQRHEITFSGDNVPAPFSSFE TGFPPEILREV
Sbjct: 121 STGHGGAPLKGHKPSDAGSGLSADSYRQRHEITFSGDNVPAPFSSFEVTGFPPEILREV 179

[Close]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL
Match: A0A6J1J570 (DEAD-box ATP-dependent RNA helicase 46-like OS=Cucurbita maxima OX=3661 GN=LOC111481466 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 8.1e-85
Identity = 162/177 (91.53%), Postives = 167/177 (94.35%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
Sbjct: 1   MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSH-APKQEVARGETFQSHDTSNGTPNT 163
           IVSISSSVQ+QKPSSGHSY NNL+ENNDKYGR SH APK EVARGETFQSHDT NG  +T
Sbjct: 61  IVSISSSVQVQKPSSGHSYGNNLSENNDKYGRVSHGAPKHEVARGETFQSHDTLNGISST 120

Query: 164 GHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           GHGGA LKGHRPSDAG+ +SAESYRQRHEITFSGDNVP PFSSFEATGFPPEILREV
Sbjct: 121 GHGGASLKGHRPSDAGSCLSAESYRQRHEITFSGDNVPPPFSSFEATGFPPEILREV 177

[Close]

BLAST of CsaV3_3G042620 vs. TAIR 10
Match: AT5G14610.1 (DEAD box RNA helicase family protein )

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-46
Identity = 107/209 (51.20%), Postives = 130/209 (62.20%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPK-------QEVARGETFQSHDTS 163
            + +SSSVQ  + SS      N  + +DKYGRGS  PK        E  R     S+D +
Sbjct: 61  AIPVSSSVQTNQQSSS---GFNSGKEDDKYGRGSDGPKSDSGSRFNEAGRTGPISSNDAA 120

Query: 164 NGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEIL 223
           +G  N   GG+  +G   S AGN +S E+Y ++HEIT SG  VP P  SFEATG P E+L
Sbjct: 121 SGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELL 180

Query: 224 RE----VRYLL---------LGGANVVRC 233
           RE    + Y L         LGGANVVRC
Sbjct: 181 RECPNFMPYALSFVPGAIFALGGANVVRC 202

[Close]

BLAST of CsaV3_3G042620 vs. TAIR 10
Match: AT5G14610.2 (DEAD box RNA helicase family protein )

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-44
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS 103
           MAATA+A+    RYAPEDP LPKPW+GLVD +TGYLYFWNPETNVTQYERP ++AP   +
Sbjct: 1   MAATASAI----RYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLA 60

Query: 104 IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPK-------QEVARGETFQSHDTS 163
            + +SSSVQ  + SS      N  + +DKYGRGS  PK        E  R     S+D +
Sbjct: 61  AIPVSSSVQTNQQSSS---GFNSGKEDDKYGRGSDGPKSDSGSRFNEAGRTGPISSNDAA 120

Query: 164 NGTPNTGHGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEIL 220
           +G  N   GG+  +G   S AGN +S E+Y ++HEIT SG  VP P  SFEATG P E+L
Sbjct: 121 SGLGNASSGGSSARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELL 176

[Close]

BLAST of CsaV3_3G042620 vs. TAIR 10
Match: AT3G01540.2 (DEAD box RNA helicase 1 )

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-38
Identity = 93/180 (51.67%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 103
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 104 SIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQ--EVARGETFQSHDTSNGTP 163
             VS+SSSVQ+Q+  +         +++DKY RGS    +  E  R     S+  +NG  
Sbjct: 61  PAVSVSSSVQVQQTDAYAP-----PKDDDKYSRGSERVSRFSEGGRSGPPYSNGAANGVG 120

Query: 164 NTGHGGAPLKGHRPSDA-GNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           ++ +G A  +   PS A  + +S E+Y +RHEIT SG  VP P  SFEATGFPPE+LREV
Sbjct: 121 DSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173

[Close]

BLAST of CsaV3_3G042620 vs. TAIR 10
Match: AT3G01540.1 (DEAD box RNA helicase 1 )

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-38
Identity = 93/180 (51.67%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 103
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 104 SIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQ--EVARGETFQSHDTSNGTP 163
             VS+SSSVQ+Q+  +         +++DKY RGS    +  E  R     S+  +NG  
Sbjct: 61  PAVSVSSSVQVQQTDAYAP-----PKDDDKYSRGSERVSRFSEGGRSGPPYSNGAANGVG 120

Query: 164 NTGHGGAPLKGHRPSDA-GNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           ++ +G A  +   PS A  + +S E+Y +RHEIT SG  VP P  SFEATGFPPE+LREV
Sbjct: 121 DSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173

[Close]

BLAST of CsaV3_3G042620 vs. TAIR 10
Match: AT3G01540.3 (DEAD box RNA helicase 1 )

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-38
Identity = 93/180 (51.67%), Postives = 117/180 (65.00%), Query Frame = 0


Query: 44  MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-S 103
           MAATA A  V  RYAPED TLPKPW+GL+D +TGYLYFWNPETNVTQYE+P  + P   S
Sbjct: 1   MAATAAASVV--RYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFS 60

Query: 104 SIVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQ--EVARGETFQSHDTSNGTP 163
             VS+SSSVQ+Q+  +         +++DKY RGS    +  E  R     S+  +NG  
Sbjct: 61  PAVSVSSSVQVQQTDAYAP-----PKDDDKYSRGSERVSRFSEGGRSGPPYSNGAANGVG 120

Query: 164 NTGHGGAPLKGHRPSDA-GNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREV 220
           ++ +G A  +   PS A  + +S E+Y +RHEIT SG  VP P  SFEATGFPPE+LREV
Sbjct: 121 DSAYGAASTRVPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREV 173

The following BLAST results are available for this feature:

BLAST of CsaV3_3G042620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651258.1	3.2e-152	100.00	hypothetical protein Csa_002550 [Cucumis sativus]	[more]
XP_011652287.1	3.6e-95	100.00	DEAD-box ATP-dependent RNA helicase 46 [Cucumis sativus]	[more]
KAG7017771.1	3.6e-95	91.37	DEAD-box ATP-dependent RNA helicase 46, partial [Cucurbita argyrosperma subsp. a...	[more]
XP_038903376.1	1.6e-90	95.45	DEAD-box ATP-dependent RNA helicase 46 [Benincasa hispida] >XP_038903378.1 DEAD-...	[more]
KAA0053652.1	2.0e-90	94.41	DEAD-box ATP-dependent RNA helicase 46 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G042620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYJ9	3.3e-43	53.01	DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 P...	[more]
Q8H136	4.7e-37	51.67	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 P...	[more]
P46942	8.8e-36	49.72	ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=...	[more]
Q5VQL1	2.9e-31	41.33	DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q5JKF2	2.3e-28	41.34	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CsaV3_3G042620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG68	4.7e-101	99.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838660 PE=4 SV=1	[more]
A0A5A7UCZ5	9.9e-91	94.41	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3BM24	9.9e-91	94.41	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B7U1	9.9e-91	94.41	DEAD-box ATP-dependent RNA helicase 46 OS=Cucumis melo OX=3656 GN=LOC103487108 P...	[more]
A0A6J1J570	8.1e-85	91.53	DEAD-box ATP-dependent RNA helicase 46-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CsaV3_3G042620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14610.1	1.5e-46	51.20	DEAD box RNA helicase family protein	[more]
AT5G14610.2	2.4e-44	53.01	DEAD box RNA helicase family protein	[more]
AT3G01540.2	3.3e-38	51.67	DEAD box RNA helicase 1	[more]
AT3G01540.1	3.3e-38	51.67	DEAD box RNA helicase 1	[more]
AT3G01540.3	3.3e-38	51.67	DEAD box RNA helicase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 63..96 e-value: 1.7E-5 score: 34.2
IPR001202	WW domain	PFAM	PF00397	WW	coord: 64..94 e-value: 1.7E-6 score: 28.0
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 68..94
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 62..96 score: 10.955
IPR001202	WW domain	CDD	cd00201	WW	coord: 65..95 e-value: 2.0423E-4 score: 35.9666
None	No IPR available	GENE3D	2.20.70.10		coord: 54..102 e-value: 2.8E-6 score: 28.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..181
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 136..220
None	No IPR available	PANTHER	PTHR47958:SF66	DEAD-BOX ATP-DEPENDENT RNA HELICASE 40	coord: 136..220
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 56..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G042620.1	CsaV3_3G042620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding