Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAAGTTTTCTTTCAGTTTGCTTGGCCCCTACTCGGCAACTGCCGAAGCTGCCTCATCAGAGCTGTCGTCAGTTCAATCTTTTCACTCCTCAGCCTGATGGAAACTCCTCTTCAATTCCCTCCAGGAAACTTCCAAGCTCGTAAGCATCTAATTTTACTCTTTTCTTCCAGTTCCCACTGAGTTGATGGAACACCATTTTTCTGGGGTTCTTGTTTTCAATTATATTGTCGATCTTATCTTTCTTCTCACTTCCTTCAATTTATTGGACTGTGGGCAACTAGATGGAGATTCATTTCTCCGCAACTTAGTGTAGCTCATGGAGCCAGCCTTCAACGTCATGGCTGAAAAATGCATTGATGTTGAGTTCGCTAGAATACAGGTCGGTTAGATTGCAATAATATCTAAGTTCAGGTTATATATTATTTTAGTTTAGATTACAATAACATGGTATAATAAGAAAATAGTTAATGTAAAATAGTAAAAACAGTAACAGTATTTACATCCAAACAACTCCTTGTTATCTATCTTTCTTCTTATATTAACAAAAACATCAAATATAATCATTGATCTGAGGTTATTCGACTTCAAAAGTAGAGATGTTTTAATATTTTACTCCATAGTCAAATTTATAAACATGGTTGGTTGTCATAGAAGTAAACAAAATCTATATTCACGTAACAAAAGGTGAGCAATCTCCCACCTCACCTCAAGGTTAGAGGTTAAAATCTACTTCTAATTAATTTAATATTACAAAGATACAAATTCTAAAGAAATGGAATCATGTTAGATGGTGGTTTATGATATTCATATTCTCAATGACTATATTTTTTGCACTTGAAGAGTTGATACCAGGGATTATCTATTCTTGGAGTGTGCCTTAAATGTGAAGGTATTCCCATTTGATATCGGGATTTACCATTTTAGAAAAAGAAATAATATGAGGTAGAAGGTTTAGAGATTTATTTGGTGTGCAATTCTTTATCTTGTTTAGTGTGAGCACAATGAGTATATCCATGGTTACTTTGTATTCTTCATAGGTAATTAGTCTATATATATATACGATATTAGGTTTCTAGATATATTCTAAGTGGATGATTGTTTCTTTTATAAAAAATCAATGAGACTTTTTTTCTTTTAAGTGTTTGTTTCTTTTTATTATATCTTTATTTATTCGTAATGTTTTGTCTGTGTCTTGACCTCGGACTGTGAGATTTTTTTTCCTAGACAATCGAAACTAGAATTTAAAGGTATTTTTTCTTTTAAGATTTTGGTTGTTTCAAGTTTAGATTTTAAATTGATATAATTTTTTTTATTTTGTTTATATGAAGATATAAATTAATAAATTAACAGGAGTTAGAGTATAATTAATACTCGGTTGGAACAATATTCCAATTTCGCAAGATTGTATTTAGTTTATTGGGCCAAAATGGAATGATAAAAAGGCGATGGGCCCATTTGGTTATCAAAATTCTACGCCGTCGCATCCATTTTTCTTGCGCTACTGAAGGGGAGAGAGAAAGGGAGAAAAATGGGAGTTCTTCTATCAAGAATCGGAGCTCTTCTTTCTAATTGGTTCGGCCCCCCCACGGCCACCGCCGAAGCTGCCTCATCCGACTCATCCTCGGTTCACTCTTTTCACTCCTCAGCCAGATGGCAACTCCACTTCAATTCCCTTCAGGAAACTCCCAAGCTTGTAA mRNA sequence ATGGAAAGTTTTCTTTCAGTTTGCTTGGCCCCTACTCGGCAACTGCCGAAGCTGCCTCATCAGAGCTGTCGTCAGTTCAATCTTTTCACTCCTCAGCCTGATGGAAACTCCTCTTCAATTCCCTCCAGGAAACTTCCAAGCTCGGGAGAGAGAAAGGGAGAAAAATGGGAGTTCTTCTATCAAGAATCGGAGCTCTTCTTTCTAATTGGTTCGGCCCCCCCACGGCCACCGCCGAAGCTGCCTCATCCGACTCATCCTCGGTTCACTCTTTTCACTCCTCAGCCAGATGGCAACTCCACTTCAATTCCCTTCAGGAAACTCCCAAGCTTGTAA Coding sequence (CDS) ATGGAAAGTTTTCTTTCAGTTTGCTTGGCCCCTACTCGGCAACTGCCGAAGCTGCCTCATCAGAGCTGTCGTCAGTTCAATCTTTTCACTCCTCAGCCTGATGGAAACTCCTCTTCAATTCCCTCCAGGAAACTTCCAAGCTCGGGAGAGAGAAAGGGAGAAAAATGGGAGTTCTTCTATCAAGAATCGGAGCTCTTCTTTCTAATTGGTTCGGCCCCCCCACGGCCACCGCCGAAGCTGCCTCATCCGACTCATCCTCGGTTCACTCTTTTCACTCCTCAGCCAGATGGCAACTCCACTTCAATTCCCTTCAGGAAACTCCCAAGCTTGTAA Protein sequence MESFLSVCLAPTRQLPKLPHQSCRQFNLFTPQPDGNSSSIPSRKLPSSGERKGEKWEFFYQESELFFLIGSAPPRPPPKLPHPTHPRFTLFTPQPDGNSTSIPFRKLPSL*
Homology
BLAST of CsaV3_3G041730 vs. NCBI nr
Match: KAE8651227.1 (hypothetical protein Csa_001964 [Cucumis sativus]) HSP 1 Score: 234.6 bits (597), Expect = 4.2e-58 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query: 1 MESFLSVCLAPTRQLPKLPHQSCRQFNLFTPQPDGNSSSIPSRKLPSSGERKGEKWEFFY 60
MESFLSVCLAPTRQLPKLPHQSCRQFNLFTPQPDGNSSSIPSRKLPSSGERKGEKWEFFY
Sbjct: 1 MESFLSVCLAPTRQLPKLPHQSCRQFNLFTPQPDGNSSSIPSRKLPSSGERKGEKWEFFY 60
Query: 61 QESELFFLIGSAPPRPPPKLPHPTHPRFTLFTPQPDGNSTSIPFRKLPSL 111
QESELFFLIGSAPPRPPPKLPHPTHPRFTLFTPQPDGNSTSIPFRKLPSL
Sbjct: 61 QESELFFLIGSAPPRPPPKLPHPTHPRFTLFTPQPDGNSTSIPFRKLPSL 110
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8651227.1 | 4.2e-58 | 100.00 | hypothetical protein Csa_001964 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 91..110 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..45 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 71..110 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..50 |
Relationships
The following mRNA feature(s) are a part of this gene:
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