CsaV3_3G041320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G041320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 33714117 .. 33715333 (+)
RNA-Seq Expression	CsaV3_3G041320
Synteny	CsaV3_3G041320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAGAAGAAGAAAAATTCAAAGAAAAAGCTGTATGATGTATGTTTGTTCACAGTTCAGTCACATGAAAGATGAAACAAATCTAAAAAGGATCTCCACAACCCCTTTTTTTTTAGCCTTTCATTTTGGTTTTCATTCAATTCCTATTTTCCTTTTTCTCTTTTTTCTTTCTTCCTTTTCGAAAAATATACAAAGAAACAGAGAAAAACTCAATTTTCTTACTGTTATTACTCATCACTTACTCATTCATTCATAAATCTAAAAACAACCCATTTCTCAAAATCCTCTTAACAGTAATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGTAATTTTCTAATCTCTTCTTAAATTTCCTTTTTTTTTTTTTTAATTTTAATTATTTTACTAAAAGGGTTTGTTTTCTGTTGCAAATCTGAAGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGTAACAAAATTGTTTTTTTTTTTTTTTTTTCTTTAAAGTTTTTTGGTGAATGAATCTTGGAAATTTTGGTATTTAATTTGTGGGTTCTGTTCGCAAATAAATTTAAAAAACAAAAAATAAAAAATGCAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGAAGTTTAATTCAATTCTCTATAAATTAAAACAAAGGGTTTCTTTAATTTTTCTATTTTGTGTTTGTGTGTGTGGGAATGTTATTTGTTCATAGTATTTGTTTGGGAAAGGTAGGGAAAGAAGGGTTTATTGATGTTGAATTACCTAATTTTATTTTGTTTTTTTTTGTAAAGTGGGTTTGTTTGTGGATTCATAAATCATGCATTTTATTAAAGTTGCCTTTTTGCTTTTAAGTCTGAAAAAAGTTGGAAAAGAAAAGGGCTTGTATATGGTTGTATACAATAAATGGGAAATTGAATGAGCGATATCTATTTTATTTTTGACAATACGTGGGTAGAAGAATCCAACTAATTTTAACACAATTAATGTAAAAAAAGGTTAATTTTTTAAATATTGTGATATAATTAATTGCAAATTTACTTTAATATTTGACCAACC

mRNA sequence

ATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGA

Coding sequence (CDS)

ATGGGTCGCTCTTCTTTTCTCTCTATTCTTCTTCTTCTTTCTTTCTTAATCACTCTCTGTTTCTCTAATGGATTTGGAAGGAATTTGAGGATGGTGGTGGAGCCTCTTGATTCACATCATAACTCCAGAGTTCTACTAGAGGAAAGTGGAAGAAAATGGAGGATGATGAAGATGGAGACAATGGATTATGCAGATCCAGAGCCAAACACGAATGTAAAAGGTGGCTATGTTTCTCCACCTCCTCCTCCAAATCATGGATGA

Protein sequence

MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMETMDYADPEPNTNVKGGYVSPPPPPNHG*

Homology

[Close]

BLAST of CsaV3_3G041320 vs. NCBI nr
Match: XP_011652234.1 (uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical protein Csa_002017 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 6.2e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 87
          MDYADPEPNTNVKGGYVSPPPPPNHG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of CsaV3_3G041320 vs. NCBI nr
Match: KAG6588364.1 (hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022213.1 hypothetical protein SDJN02_15943 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKW--RMMKM 60
          MGRS FLSI LLLS LI  CF+NGFG  +RM +E +D+HH S V L+ESG +   RMM M
Sbjct: 1  MGRSPFLSI-LLLSLLIAPCFTNGFGGKMRM-MEGVDTHHGSSVELKESGEEMRRRMMMM 60

Query: 61 ETMDYADPEPNTNVK-GGYVSPPPP 83
          ETMDY+DPEPNTNVK GGYVSPPPP
Sbjct: 61 ETMDYSDPEPNTNVKGGGYVSPPPP 83

[Close]

BLAST of CsaV3_3G041320 vs. NCBI nr
Match: KAG6659311.1 (hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothetical protein I3842_03G020400 [Carya illinoinensis])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEES--GRKWRMMKM 60
          MGRS FLSILL  S L+ LCFS+GFGR +   VE    H +S   +EES  G+  RM  +
Sbjct: 1  MGRSCFLSILLASSLLV-LCFSHGFGRKVMETVE----HEDSTFRVEESTVGKSRRM--I 60

Query: 61 ETMDYADPEPNTNVKGGYVSPPPP 83
          E MDY+DP PNTN K GY+  PPP
Sbjct: 61 EVMDYSDPGPNTNPKSGYIFSPPP 77

[Close]

BLAST of CsaV3_3G041320 vs. NCBI nr
Match: XP_041004488.1 (uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL+ILL+ S L+ LCFS+GFGR +   VE    H +S   +EES      M +E 
Sbjct: 1  MGRSCFLNILLVSSLLV-LCFSHGFGRKVMETVE----HEDSTFRVEESTVGKSRMMIEV 60

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY+DP PNTN + GY+  PPP
Sbjct: 61 MDYSDPGPNTNPRSGYIFSPPP 77

[Close]

BLAST of CsaV3_3G041320 vs. NCBI nr
Match: KAG6659310.1 (hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719711.1 hypothetical protein I3842_03G020400 [Carya illinoinensis] >KAG7985361.1 hypothetical protein I3843_03G021700 [Carya illinoinensis] >KAG7985362.1 hypothetical protein I3843_03G021700 [Carya illinoinensis])

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-08
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSN--GFGRNLRMVVEPLDSHHNSRVLLEES--GRKWRMM 60
          MGRS FLSILL  S L+ LCFS+  GFGR +   VE    H +S   +EES  G+  RM 
Sbjct: 1  MGRSCFLSILLASSLLV-LCFSHVEGFGRKVMETVE----HEDSTFRVEESTVGKSRRM- 60

Query: 61 KMETMDYADPEPNTNVKGGYVSPPPP 83
           +E MDY+DP PNTN K GY+  PPP
Sbjct: 61 -IEVMDYSDPGPNTNPKSGYIFSPPP 79

[Close]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 87
          MDYADPEPNTNVKGGYVSPPPPPNHG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL
Match: A0A2N9I673 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47476 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL ILL+ S L+ L FS+GFGR    V+E ++   NS V  EE+  K R + +E 
Sbjct: 5  MGRSCFLRILLVSSLLV-LFFSHGFGRK---VMETVEDEDNSTVQGEEAIGKSREL-IEV 64

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY+DP PNTN + GY+  PPP
Sbjct: 65 MDYSDPGPNTNPRTGYILSPPP 81

[Close]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL
Match: A0A2N9EQS6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5074 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL ILL+ S L+ L FS+GFGR    V+E ++   NS V  EE+  K R + +E 
Sbjct: 1  MGRSCFLRILLVSSLLV-LFFSHGFGRK---VMETVEDEDNSTVQGEEAIGKSREL-IEV 60

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY+DP PNTN + GY+  PPP
Sbjct: 61 MDYSDPGPNTNPRTGYILSPPP 77

[Close]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL
Match: A0A6J5UH19 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23794 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.8e-08
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGR  FL +  ++S L+ LCFS+GFGRNL   + P+D    S ++ +E+  K R M +  
Sbjct: 1  MGRPWFLRV-FIVSCLLALCFSHGFGRNL---MGPIDLEDFSVLVSKETHGKPRKM-ITV 60

Query: 61 MDYADPEPNTNVKGGYV-SPPPPPN 85
          MDYADPEPN N + GY+ +PPP PN
Sbjct: 61 MDYADPEPNVNPRTGYIFTPPPQPN 80

[Close]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL
Match: A0A3Q7YDI7 (uncharacterized protein LOC101490238 OS=Cicer arietinum OX=3827 GN=LOC101490238 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.8e-08
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60
          MGRS FL ILL+ SFL  L F  GFGR L M  E ++   + + L+E + RK R +  E 
Sbjct: 1  MGRSLFLVILLVSSFLF-LSFGYGFGRVLLM--ETVEDGDSMKRLMEHANRKMREV-YEI 60

Query: 61 MDYADPEPNTNVKGGYVSPPPP 83
          MDY++PEPNTN K G +S PPP
Sbjct: 61 MDYSEPEPNTNPKSGIISSPPP 78

The following BLAST results are available for this feature:

BLAST of CsaV3_3G041320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652234.1	6.2e-41	100.00	uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical ...	[more]
KAG6588364.1	1.5e-18	69.41	hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6659311.1	1.3e-09	54.76	hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothe...	[more]
XP_041004488.1	1.7e-09	51.22	uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans re...	[more]
KAG6659310.1	4.1e-08	53.49	hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719711.1 hypothe...	[more]

BLAST of CsaV3_3G041320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS0	3.0e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1	[more]
A0A2N9I673	7.5e-08	51.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47476 PE=4 SV=1	[more]
A0A2N9EQS6	7.5e-08	51.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5074 PE=4 SV=1	[more]
A0A6J5UH19	9.8e-08	48.24	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23794 PE=4 S...	[more]
A0A3Q7YDI7	9.8e-08	51.22	uncharacterized protein LOC101490238 OS=Cicer arietinum OX=3827 GN=LOC101490238 ...	[more]

BLAST of CsaV3_3G041320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..86
None	No IPR available	PANTHER	PTHR37908	TRANSMEMBRANE PROTEIN	coord: 1..83
None	No IPR available	PANTHER	PTHR37908:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G041320.1	CsaV3_3G041320.1	mRNA