CsaV3_3G041120 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G041120
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription initiation factor TFIID subunit 15
Location	chr3: 33612170 .. 33616696 (-)
RNA-Seq Expression	CsaV3_3G041120
Synteny	CsaV3_3G041120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTAACGCAACCCAACTCAGGTAACCCTATCGCTCCTCTCTTCTCCATCTTCCTCCTACCTGTTTTTTCTTTGAGATCCAATTTCTCCACTACCCATTGATTCAAATTTCATGCTTTCCTTGTTCATCGCTCCGTAATCTTTGTTTTCTCTGCCTTTTCCTTTCAAGATCTATATGCTTTCAACCCCTTCACGAAGATTTATGCTGCTGTCTGTATTGGGTTCTTTACGAAATTTTAGTTTACTATGTACAATTTCTCTTTATCTAATTTGATGGATCTTTTTTTTGTAGGTTTTAACTTTGATTTCATGAAAATTGGTTAATAATGGCTAGCTATGTGGGTAAAGGAGCCCCCTCAAATGGGTCTATTTACATCTGCAACCTGCCGTATGGGACAGATGAGAATATGCTTGCTGAGTATTTTGGGACAATTGGGGTATTAAAGGTTGGGAAATTTGCTTGCCTGTTTCTATGTGTATTTGCCTTTTGTTTTATTAGTATTAGTCTATGTGAAGATTTTCTTTTTCTTTTTTTCTTTTTTTTGCCTATTTATAATAGTTATTGCTCTTTTTTTTCCCGCTTGTTTAATCTTCAAAGAAAGACAAGCGAACAGGTAGACCAAAGATCTGGTTGTATCGTGATAAATCAACGAATGAACCTAAAGGGGATGCTACTGTAACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGCATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGTGGTGGATCCAATTGTTGCTGCTGGTGATGATATTGGTTCTGAGGAAACTGCTGTGGGTATGAACGGTGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGGTCTGTGATGTGATATTGGTGAGCAGCTCCTTCTTGCTTCTTTCAATTAATCAACCTTGGTTGCCTTCTAGCTTTCATTTTTTGTTGTTTAAATGGCTTCTCATGCTTTATCCTACTGGCAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGAGCTGCTGGTAGTGGTGCAGGCTCTATAGGCCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGCCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTAAATATAATTTTCCTTTGCATTTCCTTTTCTGCAATATTATCATTTGGTATGTAAGGAATTATAGTCTAATTTTGTAAAACGACTAAATTAATTCATTTCTTTTCAACTAAAGTATACAGATCAGAGTGGATTATTTAGTTAGAAGTTAAAATTCCATTCAATTAAAATAGAAGAAGATAGATTTTTGGTTTATTATCTAACGGCAAGAAGTTCTCTCTCCAATAATTGATTCCACACGTTTTGTATCCAATCTTTACTGCTGGTTTAATAGAATAAGCACTAAAGTGGATGATGGTGATACACTTGAATTTATGAAAAATTTTGCGTTATATTTTTACTTGTTTTTTTGGGTGTGTTTATTTATACATTTATTTATTTTGGTTTTTCTAATGTTTTTAAAAATATCATGGGAATTGTGAAAGGATGCATCTCTGGAGAGGGATACGAAGGAGCAATAGCAATGTTAATTTGAAGTTTTGGGAGAAAGTTTCTCTTGTATGGTTATTTGTTTCTAGATACTCGGTTCTTTGGTTGGATAATACTGCTTGCTTGTGTAACTGGTTCTTCCTTGTGCTTATGTTTCAGGTGTGGTAACATTAATTGGGCAAAGCGTACAAAATGCAATATTTGTAATACAAACAAACCTGGTCATAACGAGGGTGGTGTGAGGTATAAAGTTAACAATTTTTTTTTTTGAAAAGCACACGATCTTATTTTCTGATGGCGTTGCTTGCATTTTGTTTTTTGTGTGTCTGTGTGTTTTAGTTTAATGTGGCAACCTTCTCTAGGGAAATATGCCACCTTTTATTTGATTAAAATGTGCTTTAGACTTTCTATCAAATTGACATGAATTTGACTTTTGAGATTAGCTTCTCATGTCAATCAATTGAGTTTAAAGGAAATTTATAATGTATTTGCAGTATTATGAGCTTTAACTTTTCGGTTTATCTAAAAGATTAGTTTAGAAAATGGGAATTAAGACTTTCTGTTACTACCTTGAAACTGAAAATCAGAATCCAGACTTTCACTTGACCGTTTAAACATCTTTTGTCTTGAATATTAGTTTCTTAGCAGTTTTACTTGACCTTTTAACATGTTTTTTTGTCTTAAAAATATTAGATTTGTATTGTCAATCTGAATTCTGGGCATATAGCTCAACTAATTAAAGCATTCCCTCGACCAAGAGGTCTGAGGTTTGCATCCTCCCACCCCCTCTAATAAATGGAATTCTTATTACTTTGATAAACTTTTACTGTTTGATCAGAGTAATCCTCTATTTAGGAATGATTTTGAATTGTTGAAAATCATTTGTCATTATTCAAAATCACTCTCAAAAGGATTTAAAAGCAATCTTAATGGTATGAAAGTTGTGTTTAAAAGTGTAAAATCAAACGTTAGATTGTTTTTGCATGACATTTCTGACTGGTTTTGAACACGAGAAATGATTTTCACAATTTTAGTATTACTTTGAAATGTGCCCTAATGCCTACCTCACTTGAATAGATTTGTTCTATAGAATTGTGTACTTGAGTTGTACTAATAATAATAGCCTGCTACAAAAACTTCTCTTTGTTTTTTCAATTATGATTGAACAGAGGAGGGCGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGTCGGCGACGAGAAGCTGAAGAAGTAAGATGGGGAACCATTATTTTGTGGAAAACAATTTTCTGATTTTGATTTGACAGTCTTTAATTATAATATCAGGATGATGGAGAGATGTATGATGAGTTTGGAAACCTTAAGAAGAAGTTTCGTGCCAAATCCCAGCAAATGGAAGCCGGTCGGATACTTCCAGGTGCTGGGCGGGCCGGATGGGAAGTTGAGGAACTAGGTACGAATCTGTCCACTAAGACCTTGCTGTTGTCCTTAAAATTATTATGAGAACTTTTGTGCATGACTGTTAAATAAAGCTTGTAATATCGTCGGAGAATTTAGCCCCCCAGGGGGCAGCTCCGCTAGTTAAGATCTGCAGTCTCTCAGTGTCACTTCTTGGTGATTGCATGTTCGAATCTTTGAGTGAGCTTAGCATGGAAAGTTCTTGATGTCTCCATGATCGGGTCTTGGGTTAGATGTGGGCTTAAAAAAATTGTCTAAAAATATTTGTGCTATGTTATGAGAAGTTAGAAGGAAACTATAAGGAAGCAATATCCTAATGGAGAAGTAAGCTGTGTTGAAATCATTGTGTGGAACGAAATCAAAATCCCAATTATTATGATCGTACCGATCATCTTGAACAATGATTGGCTTGAAACAAAGCTACCTGATTACATTTTTTTTGCAAACTTTCACTTGCAGGTGTAGTTGAGAAAGATAGGAGGGAGAGAAGTAGAGACCGAGGAAGGGACTGGGATGACCGAGACAGCAGCAGAAATAGAGAAAGAGAAAGCAGGGAAAGACATCGGAGTCGAAGTAGGGAGCGAGATAGGGGAAGAGATCGTGATCTAGATTATGAGTACGAGCGAGATAGAGAATATGGGAGGGACAAGGACCACCGGAACAGACACCGATACTGAGAACGAGTGGTGTCTGTGAATTGATAACCGGTGGGGATATAATTTTGTTGAGGAGTCAGGGGGAATGGTTGAAACATTTGGTTTATAAAACAATATGGTAGAACCTCGTGGGTCTTATTTTTTTTTTTTTGAAAGATTCTATTTAATACTGTGATACATCTTTTTGTCACTTGATGAATTTGCAAAGCGATTGGAATTGTCTTTTGCAATCTTATCAGGTTTGAAACACCCATTCTCTACCGTTTTGATACCACTTTTCATTTAATGCACGTTGAAACCAATTTAAAAACTATAAAATTTAAAATGTAGCTAGCCTTTGTTGTACTTATTAAACAAAAATAAAGATCAAAATCCCCATGATTGTGCAGCAACGAAGGATAGATAATTCATAGTTTATGATCGAAGTGCACTTACCTATCTTCAATGGACAAATGAATACCCAAAGCTACAAATTTAGAGGAATAGGAA

mRNA sequence

ATGGCTAGCTATGTGGGTAAAGGAGCCCCCTCAAATGGGTCTATTTACATCTGCAACCTGCCGTATGGGACAGATGAGAATATGCTTGCTGAGTATTTTGGGACAATTGGGGTATTAAAGAAAGACAAGCGAACAGGTAGACCAAAGATCTGGTTGTATCGTGATAAATCAACGAATGAACCTAAAGGGGATGCTACTGTAACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGCATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGTGGTGGATCCAATTGTTGCTGCTGGTGATGATATTGGTTCTGAGGAAACTGCTGTGGGTATGAACGGTGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGAGCTGCTGGTAGTGGTGCAGGCTCTATAGGCCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGCCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGTAACATTAATTGGGCAAAGCGTACAAAATGCAATATTTGTAATACAAACAAACCTGGTCATAACGAGGGTGGTGTGAGAGGAGGGCGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGTCGGCGACGAGAAGCTGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGAAACCTTAAGAAGAAGTTTCGTGCCAAATCCCAGCAAATGGAAGCCGGTCGGATACTTCCAGGTGCTGGGCGGGCCGGATGGGAAGTTGAGGAACTAGGTGTAGTTGAGAAAGATAGGAGGGAGAGAAGTAGAGACCGAGGAAGGGACTGGGATGACCGAGACAGCAGCAGAAATAGAGAAAGAGAAAGCAGGGAAAGACATCGGAGTCGAAGTAGGGAGCGAGATAGGGGAAGAGATCGTGATCTAGATTATGAGTACGAGCGAGATAGAGAATATGGGAGGGACAAGGACCACCGGAACAGACACCGATACTGA

Coding sequence (CDS)

ATGGCTAGCTATGTGGGTAAAGGAGCCCCCTCAAATGGGTCTATTTACATCTGCAACCTGCCGTATGGGACAGATGAGAATATGCTTGCTGAGTATTTTGGGACAATTGGGGTATTAAAGAAAGACAAGCGAACAGGTAGACCAAAGATCTGGTTGTATCGTGATAAATCAACGAATGAACCTAAAGGGGATGCTACTGTAACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGCATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATCTTTCATTTAATGTGGTGGTGGATCCAATTGTTGCTGCTGGTGATGATATTGGTTCTGAGGAAACTGCTGTGGGTATGAACGGTGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGAGCTGCTGGTAGTGGTGCAGGCTCTATAGGCCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGCCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGTAACATTAATTGGGCAAAGCGTACAAAATGCAATATTTGTAATACAAACAAACCTGGTCATAACGAGGGTGGTGTGAGAGGAGGGCGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGTCGGCGACGAGAAGCTGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGAAACCTTAAGAAGAAGTTTCGTGCCAAATCCCAGCAAATGGAAGCCGGTCGGATACTTCCAGGTGCTGGGCGGGCCGGATGGGAAGTTGAGGAACTAGGTGTAGTTGAGAAAGATAGGAGGGAGAGAAGTAGAGACCGAGGAAGGGACTGGGATGACCGAGACAGCAGCAGAAATAGAGAAAGAGAAAGCAGGGAAAGACATCGGAGTCGAAGTAGGGAGCGAGATAGGGGAAGAGATCGTGATCTAGATTATGAGTACGAGCGAGATAGAGAATATGGGAGGGACAAGGACCACCGGAACAGACACCGATACTGA

Protein sequence

MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDDIGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHRSRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY*

Homology

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BLAST of CsaV3_3G041120 vs. NCBI nr
Match: XP_011652224.1 (transcription initiation factor TFIID subunit 15 [Cucumis sativus] >XP_011652225.1 transcription initiation factor TFIID subunit 15 [Cucumis sativus] >KGN59538.1 hypothetical protein Csa_002612 [Cucumis sativus])

HSP 1 Score: 785.0 bits (2026), Expect = 3.0e-223
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 396

[Close]

BLAST of CsaV3_3G041120 vs. NCBI nr
Match: XP_008443374.1 (PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis melo])

HSP 1 Score: 769.2 bits (1985), Expect = 1.7e-218
Identity = 386/396 (97.47%), Postives = 390/396 (98.48%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK+KDD+SFNV VDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IG EE+  GMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRD SRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDGSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGR+RDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRERDLDYEYERDREYGRDKDHRNRHRY 396

[Close]

BLAST of CsaV3_3G041120 vs. NCBI nr
Match: KAA0053788.1 (transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa] >TYK25613.1 transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa])

HSP 1 Score: 758.8 bits (1958), Expect = 2.3e-215
Identity = 383/396 (96.72%), Postives = 387/396 (97.73%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIG   KDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIG---KDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK+KDD+SFNV VDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IG EE+  GMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRD SRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDGSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGR+RDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRERDLDYEYERDREYGRDKDHRNRHRY 393

[Close]

BLAST of CsaV3_3G041120 vs. NCBI nr
Match: XP_038906136.1 (transcription initiation factor TFIID subunit 15 [Benincasa hispida] >XP_038906137.1 transcription initiation factor TFIID subunit 15 [Benincasa hispida])

HSP 1 Score: 755.4 bits (1949), Expect = 2.5e-214
Identity = 381/400 (95.25%), Postives = 386/400 (96.50%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKG+PSNGS+YICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGSPSNGSVYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAA AAVEWFNNKDFHGSIIEVHIAESKSKDDLSFN  V+PIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAAFAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNAGVEPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           +G EE A GMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 LGFEENAAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWD----DRDSSRNRERESR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGR+WD    DRD SRNRERESR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGREWDDRDRDRDGSRNRERESR 360

Query: 361 ERHRSRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           ERHRSRSRERDRGRDRD DYEYERDREYGRDKDHRNRHRY
Sbjct: 361 ERHRSRSRERDRGRDRDRDYEYERDREYGRDKDHRNRHRY 400

[Close]

BLAST of CsaV3_3G041120 vs. NCBI nr
Match: XP_022934703.1 (transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_022934704.1 transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_023526050.1 transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo] >XP_023526051.1 transcription initiation factor TFIID subunit 15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 721.1 bits (1860), Expect = 5.3e-204
Identity = 367/400 (91.75%), Postives = 379/400 (94.75%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGA SNGS+Y+CNLPYGTD+NMLAEYFGTIG+LKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYVCNLPYGTDDNMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAESKSKDDLSFNV  DPIV  GDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSFNVGDDPIV-VGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           +G EE A  +NGGGGRGRGRGD PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 LGFEENAADVNGGGGRGRGRGDVPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGG RGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGTRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDD----RDSSRNRERESR 360
           KSQQMEAGR+LPGAGRAGWEVEELGVVEK+RRERSRDRG  WDD    RDSSRNRERE+R
Sbjct: 301 KSQQMEAGRVLPGAGRAGWEVEELGVVEKERRERSRDRG--WDDRDKNRDSSRNRERENR 360

Query: 361 ERHRSRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           ERHRS SRERDRGRDRD DYEYERDREYGRDKDHR+RHR+
Sbjct: 361 ERHRSPSRERDRGRDRDRDYEYERDREYGRDKDHRSRHRH 397

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot
Match: Q9AST1 (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 1.2e-137
Identity = 264/390 (67.69%), Postives = 308/390 (78.97%), Query Frame = 0


Query: 8   GAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G P+NGS+Y+ NLP GTDENMLA+YFGTIG+LK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDDIGSEETA 127
           TYEDPHAALAAVEWFNNKDFHG+ I V +AESK+K+        D +     D G+EET 
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------AGDAVEFVEFDGGAEET- 122

Query: 128 VGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSG 187
              NGG GRGRG+ D+  K WQQ+GDW+CPNTSC+NVNFAFRGVCNRCG+ARP+GA+G  
Sbjct: 123 ---NGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASGGS 182

Query: 188 AGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKP 247
            G+ GRGRGRG          +  GAPTGLFGPNDW CPMCGN+NWAKR KCNICNTNKP
Sbjct: 183 MGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTNKP 242

Query: 248 GHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQMEA 307
           G NEGGVRGGRGGGYKELDE+ELEETKRRRREAEEDDGEMYDEFGNLKKK+R K+ Q + 
Sbjct: 243 GQNEGGVRGGRGGGYKELDEQELEETKRRRREAEEDDGEMYDEFGNLKKKYRVKTNQADT 302

Query: 308 GRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERE-SRERHRSRSRER 367
            R    AGRAGWEVEELG ++KD RERSRDR RD       R R+    ++R RSRSRER
Sbjct: 303 -RPAVAAGRAGWEVEELG-IDKDGRERSRDRQRD-------RGRDHHYDKDRRRSRSRER 362

Query: 368 DRGRDRDLDYEY--ERDREYGRDKDHRNRH 395
           +RG++RD DY++  +RDR+YGR++  R R+
Sbjct: 363 ERGKERDYDYDHDRDRDRDYGRERGSRYRN 372

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.8e-30
Identity = 91/261 (34.87%), Postives = 128/261 (49.04%), Query Frame = 0


Query: 12  NGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N +I++  L  G   + + E+F  IG++K +K+TG+P I LY DK T +PKG+ATV+++D
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292

Query: 72  PHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDDIGSEETAVGMN 131
           P +A AA++WF+ K+FHG+II+V  A  +                       E    G +
Sbjct: 293 PPSAKAAIDWFDGKEFHGNIIKVSFATRR----------------------PEFMRGGGS 352

Query: 132 GGGGRG----RGRGDAPGKAWQ-QEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGS 191
           GGG RG    RGRG   G+    + GDW+CPN SC N+NFA R  CN+C   RP  +  S
Sbjct: 353 GGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 412

Query: 192 GAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNK 251
           G    GRG G     +  GG     G   G      +         ++          ++
Sbjct: 413 GGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDR 471

Query: 252 PGHNEGGVRGG-----RGGGY 263
            G   GG RGG     RGGGY
Sbjct: 473 SGGGYGGDRGGGYGGDRGGGY 471

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 1.5e-28
Identity = 98/287 (34.15%), Postives = 134/287 (46.69%), Query Frame = 0


Query: 14  SIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPH 73
           +I++  +   T E  +  +FG IG++KKDKRT +PKIWLY++K T   KG+ATVTY+D +
Sbjct: 121 TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTN 180

Query: 74  AALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAG--DDIGSEETAVGMN 133
           AA +A+EWF+ +DF+G+ I+V +A+ ++    ++N         G     G      G  
Sbjct: 181 AAQSAIEWFDGRDFNGNAIKVSLAQRQN----NWNKGGGGGGGGGGRGGFGGRRGGGGGG 240

Query: 134 GGGGRGRGR--------------------GDAPGKAWQQEGDWLCPNTSCSNVNFAFRGV 193
           GGGG G GR                    G   G    ++GDW C   SC+N NFA+R  
Sbjct: 241 GGGGGGGGRFDRGGGGGGGRYDRGGGGGGGGGGGNVQPRDGDWKC--NSCNNTNFAWRNE 300

Query: 194 CNRC--------GSARPSGAAGSGAGSIGRGRGRGTS---------NQDSGGNSRQVGAP 253
           CNRC        GS+   G  G G G  G G  RG           N+D GGNS+  G  
Sbjct: 301 CNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQGGGGG 360

Query: 254 TGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGG 262
            G  G                         ++   N GG RGGRGGG
Sbjct: 361 GGGGG-----------------------GYSRFNDNNGGGRGGRGGG 378

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot
Match: Q01844 (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-26
Identity = 98/277 (35.38%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 12  NGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N +IY+  L      + LA++F   GV+K +KRTG+P I +Y DK T +PKGDATV+YED
Sbjct: 360 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419

Query: 72  PHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAG--DDIGSEETAVG 131
           P  A AAVEWF+ KDF GS ++V +A  K   + S    + P    G    +       G
Sbjct: 420 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN-SMRGGLPPREGRGMPPPLRGGPGGPG 479

Query: 132 MNGG-----GGRGRGRGDAP--------------GKAWQQEGDWLCPNTSCSNVNFAFRG 191
             GG     GGRG  RG  P              G    + GDW CPN  C N NFA+R 
Sbjct: 480 GPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRT 539

Query: 192 VCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQV--GAPTGLFGPNDWPCPMC 251
            CN+C + +P G         G  RGRG      GG    +  G P G+F          
Sbjct: 540 ECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMF---------- 599

Query: 252 GNINWAKRTKCNICNTNKPGHNEGGVRGGRG---GGY 263
                              G + GG RGGRG   GG+
Sbjct: 600 ---------------RGGRGGDRGGFRGGRGMDRGGF 610

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot
Match: Q61545 (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 5.4e-26
Identity = 98/277 (35.38%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 12  NGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N +IY+  L      + LA++F   GV+K +KRTG+P I +Y DK T +PKGDATV+YED
Sbjct: 359 NSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 418

Query: 72  PHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAG--DDIGSEETAVG 131
           P  A AAVEWF+ KDF GS ++V +A  K   + S    + P    G    +       G
Sbjct: 419 PPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN-SMRGGMPPREGRGMPPPLRGGPGGPG 478

Query: 132 MNGG-----GGRGRGRGDAP--------------GKAWQQEGDWLCPNTSCSNVNFAFRG 191
             GG     GGRG  RG  P              G    + GDW CPN  C N NFA+R 
Sbjct: 479 GPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAGDWQCPNPGCGNQNFAWRT 538

Query: 192 VCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQV--GAPTGLFGPNDWPCPMC 251
            CN+C + +P G         G  RGRG      GG    +  G P G+F          
Sbjct: 539 ECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMF---------- 598

Query: 252 GNINWAKRTKCNICNTNKPGHNEGGVRGGRG---GGY 263
                              G + GG RGGRG   GG+
Sbjct: 599 ---------------RGGRGGDRGGFRGGRGMDRGGF 609

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL
Match: A0A0A0LCQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.4e-223
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 396

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL
Match: A0A1S3B7U8 (transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC103486976 PE=4 SV=1)

HSP 1 Score: 769.2 bits (1985), Expect = 8.2e-219
Identity = 386/396 (97.47%), Postives = 390/396 (98.48%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK+KDD+SFNV VDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IG EE+  GMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRD SRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDGSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGR+RDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRERDLDYEYERDREYGRDKDHRNRHRY 396

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL
Match: A0A5A7UFC0 (Transcription initiation factor TFIID subunit 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007720 PE=4 SV=1)

HSP 1 Score: 758.8 bits (1958), Expect = 1.1e-215
Identity = 383/396 (96.72%), Postives = 387/396 (97.73%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIG   KDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIG---KDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESK+KDD+SFNV VDPIVAAGDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           IG EE+  GMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 IGPEESTAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRD SRNRERESRERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDGSRNRERESRERHR 360

Query: 361 SRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSRERDRGR+RDLDYEYERDREYGRDKDHRNRHRY
Sbjct: 361 SRSRERDRGRERDLDYEYERDREYGRDKDHRNRHRY 393

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL
Match: A0A6J1F8E5 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111441809 PE=4 SV=1)

HSP 1 Score: 721.1 bits (1860), Expect = 2.6e-204
Identity = 367/400 (91.75%), Postives = 379/400 (94.75%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGA SNGS+Y+CNLPYGTD+NMLAEYFGTIG+LKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYVCNLPYGTDDNMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAESKSKDDLSFNV  DPIV  GDD
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSFNVGDDPIV-VGDD 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           +G EE A  +NGGGGRGRGRGD PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 LGFEENAADVNGGGGRGRGRGDVPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGG RGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGTRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDD----RDSSRNRERESR 360
           KSQQMEAGR+LPGAGRAGWEVEELGVVEK+RRERSRDRG  WDD    RDSSRNRERE+R
Sbjct: 301 KSQQMEAGRVLPGAGRAGWEVEELGVVEKERRERSRDRG--WDDRDKNRDSSRNRERENR 360

Query: 361 ERHRSRSRERDRGRDRDLDYEYERDREYGRDKDHRNRHRY 397
           ERHRS SRERDRGRDRD DYEYERDREYGRDKDHR+RHR+
Sbjct: 361 ERHRSPSRERDRGRDRDRDYEYERDREYGRDKDHRSRHRH 397

[Close]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL
Match: A0A6J1DG70 (transcription initiation factor TFIID subunit 15 OS=Momordica charantia OX=3673 GN=LOC111019801 PE=4 SV=1)

HSP 1 Score: 716.1 bits (1847), Expect = 8.2e-203
Identity = 365/398 (91.71%), Postives = 377/398 (94.72%), Query Frame = 0


Query: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGAPSNGSIYICNLP+GTDENMLAEYFGTIG+LKKDKRTGRPKIWLYRDK TNE
Sbjct: 1   MASYPGKGAPSNGSIYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKLTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDD 120
           PKGDATVTYEDPHAALAAVEWFNNKDFHG+IIEVHIAESKSKDDLS+NVV DP V   D 
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSYNVVGDPSV-VDDS 120

Query: 121 IGSEETAVGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180
           +G EE A  MNGG GRGRGRGD PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP
Sbjct: 121 LGFEENAGSMNGGSGRGRGRGDTPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARP 180

Query: 181 SGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCN 240
           SGAAGSGAGSIGRGRGRG  NQDSGGNSR VG PTGLFGPNDWPCPMCGNINWAKRTKCN
Sbjct: 181 SGAAGSGAGSIGRGRGRG--NQDSGGNSRPVGGPTGLFGPNDWPCPMCGNINWAKRTKCN 240

Query: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300
           ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA
Sbjct: 241 ICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRA 300

Query: 301 KSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERESRERHR 360
           KSQQMEAGRILPGAGRAGWEVEELGV+EKDRRERSR+RGR+WDDRDSSRNRERE+RERHR
Sbjct: 301 KSQQMEAGRILPGAGRAGWEVEELGVIEKDRRERSRERGREWDDRDSSRNRERENRERHR 360

Query: 361 SRSRERDRG--RDRDLDYEYERDREYGRDKDHRNRHRY 397
           SRSR+RDRG  RDRD DY+YERDREYGR+KDHRNRHRY
Sbjct: 361 SRSRDRDRGRDRDRDRDYDYERDREYGREKDHRNRHRY 395

[Close]

BLAST of CsaV3_3G041120 vs. TAIR 10
Match: AT1G50300.1 (TBP-associated factor 15 )

HSP 1 Score: 491.1 bits (1263), Expect = 8.3e-139
Identity = 264/390 (67.69%), Postives = 308/390 (78.97%), Query Frame = 0


Query: 8   GAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G P+NGS+Y+ NLP GTDENMLA+YFGTIG+LK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDLSFNVVVDPIVAAGDDIGSEETA 127
           TYEDPHAALAAVEWFNNKDFHG+ I V +AESK+K+        D +     D G+EET 
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------AGDAVEFVEFDGGAEET- 122

Query: 128 VGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSG 187
              NGG GRGRG+ D+  K WQQ+GDW+CPNTSC+NVNFAFRGVCNRCG+ARP+GA+G  
Sbjct: 123 ---NGGAGRGRGQADSSAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASGGS 182

Query: 188 AGSIGRGRGRGTSNQDSGGNSRQVGAPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKP 247
            G+ GRGRGRG          +  GAPTGLFGPNDW CPMCGN+NWAKR KCNICNTNKP
Sbjct: 183 MGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNTNKP 242

Query: 248 GHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQMEA 307
           G NEGGVRGGRGGGYKELDE+ELEETKRRRREAEEDDGEMYDEFGNLKKK+R K+ Q + 
Sbjct: 243 GQNEGGVRGGRGGGYKELDEQELEETKRRRREAEEDDGEMYDEFGNLKKKYRVKTNQADT 302

Query: 308 GRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDSSRNRERE-SRERHRSRSRER 367
            R    AGRAGWEVEELG ++KD RERSRDR RD       R R+    ++R RSRSRER
Sbjct: 303 -RPAVAAGRAGWEVEELG-IDKDGRERSRDRQRD-------RGRDHHYDKDRRRSRSRER 362

Query: 368 DRGRDRDLDYEY--ERDREYGRDKDHRNRH 395
           +RG++RD DY++  +RDR+YGR++  R R+
Sbjct: 363 ERGKERDYDYDHDRDRDRDYGRERGSRYRN 372

[Close]

BLAST of CsaV3_3G041120 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-08
Identity = 37/81 (45.68%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 129 GMNGGGGRGRGRGDAPGK---AWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAG 188
           G  GGGG G   GD  G+      ++GDW CPN SC NVNFA R  CN+CG+  PSG + 
Sbjct: 60  GNRGGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSS 119

Query: 189 SGAGSIGRGRGRGTSNQDSGG 207
                 G G  RG  + D GG
Sbjct: 120 GANDRGGGGYSRGGGDSDRGG 140

[Close]

BLAST of CsaV3_3G041120 vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-08
Identity = 37/81 (45.68%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 129 GMNGGGGRGRGRGDAPGK---AWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAG 188
           G  GGGG G   GD  G+      ++GDW CPN SC NVNFA R  CN+CG+  PSG + 
Sbjct: 60  GNRGGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGNVNFARRVECNKCGALAPSGTSS 119

Query: 189 SGAGSIGRGRGRGTSNQDSGG 207
                 G G  RG  + D GG
Sbjct: 120 GANDRGGGGYSRGGGDSDRGG 140

The following BLAST results are available for this feature:

BLAST of CsaV3_3G041120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652224.1	3.0e-223	100.00	transcription initiation factor TFIID subunit 15 [Cucumis sativus] >XP_011652225...	[more]
XP_008443374.1	1.7e-218	97.47	PREDICTED: transcription initiation factor TFIID subunit 15 [Cucumis melo]	[more]
KAA0053788.1	2.3e-215	96.72	transcription initiation factor TFIID subunit 15 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038906136.1	2.5e-214	95.25	transcription initiation factor TFIID subunit 15 [Benincasa hispida] >XP_0389061...	[more]
XP_022934703.1	5.3e-204	91.75	transcription initiation factor TFIID subunit 15-like [Cucurbita moschata] >XP_0...	[more]

BLAST of CsaV3_3G041120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST1	1.2e-137	67.69	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702...	[more]
Q92804	2.8e-30	34.87	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]
Q27294	1.5e-28	34.15	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
Q01844	5.4e-26	35.38	RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1	[more]
Q61545	5.4e-26	35.38	RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2	[more]

BLAST of CsaV3_3G041120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCQ7	1.4e-223	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824830 PE=4 SV=1	[more]
A0A1S3B7U8	8.2e-219	97.47	transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UFC0	1.1e-215	96.72	Transcription initiation factor TFIID subunit 15 OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1F8E5	2.6e-204	91.75	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1DG70	8.2e-203	91.71	transcription initiation factor TFIID subunit 15 OS=Momordica charantia OX=3673 ...	[more]

BLAST of CsaV3_3G041120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50300.1	8.3e-139	67.69	TBP-associated factor 15	[more]
AT5G58470.1	1.4e-08	45.68	TBP-associated factor 15B	[more]
AT5G58470.2	1.4e-08	45.68	TBP-associated factor 15B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 263..283
None	No IPR available	GENE3D	4.10.1060.10		coord: 218..249 e-value: 9.0E-10 score: 39.7 coord: 148..183 e-value: 6.6E-13 score: 49.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..371
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..215
None	No IPR available	PANTHER	PTHR12999	ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED	coord: 1..394
None	No IPR available	PANTHER	PTHR12999:SF17	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15	coord: 1..394
None	No IPR available	CDD	cd12534	RRM_SARFH	coord: 15..97 e-value: 8.91398E-52 score: 166.056
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 14..95 e-value: 3.2E-13 score: 59.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 15..91 e-value: 7.5E-8 score: 32.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 13..99 score: 11.775786
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 221..245 e-value: 2.7E-6 score: 36.9 coord: 152..178 e-value: 6.1E-5 score: 32.4
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 222..248 e-value: 1.5E-4 score: 21.0 coord: 151..181 e-value: 6.4E-7 score: 28.6
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 223..242
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 154..175
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 150..181 score: 9.969523
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 219..248 score: 9.563004
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..95 e-value: 3.1E-21 score: 77.4
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 145..182
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 212..249
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G041120.1	CsaV3_3G041120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding