CsaV3_3G040340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G040340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 33111634 .. 33113596 (+)
RNA-Seq Expression	CsaV3_3G040340
Synteny	CsaV3_3G040340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGAAAGGAGCAGCCGATCAAAACACCCAAAAAAGCAAAAACACAAAACCGCTATTCATTGATCAACCCAACAAAATATTACATATAAATTATAAACAAAAAAAAAAGCCACAAACTCCAAATCAAAATTCCCTTCTTCAATTTTCCCTCAATTTCTTCCTCTTAATCAAAACCTTCCCTCCAATTCCTTCTCTCCTTCTTCAATCCGATTCAGGTATGATCCACCCCGCTCTCCTACTCCATCTCTCTAATTCCCTCGATTCCTTTTTTTTTTTTCTGATTTTTCATTCTCCCTTCTCCTTCTTCCGATTTTGTCTCCGTTTCTGCCTTTTTCCGCTACTTCTCTCTTCATTCCTACTGTTTCTTTTTTCCTCTCACTTTGAAGCTGGTTTAGGGTTTTTTTTTTTTTTTTTGGTTCTCCCCCCCTGTTTTTAGTTTTATGGTTCTTGGCGGTCATTGCGGTGGAATCATTGACATACTATGTGATCTCTTTGCTAATGACTTTCGTCATAAGTTATTCTGTTGACTATCGGGGTTTTTCGTTGTTTGTTAATCGTTATTCTTGTTTTGTTTTTAAGATTTTTTATTGTTTGGGTGGTTTATTTTTGTTGGGATCATTTTTGGGAAGGGGATTTTTAGACTGCTGGAAGAATGTTCGTGCATGCAGAATCGATTAACTGTAAAGCTTGTGCATCACTGTTGTAAGTTGAGGGTTAATGTGAAGAAAAAAGATTTGGATATTGTATGTGTCCAAATCATTGTTTGATCGGGTCAGGTGGTCAACAAAAATGACAGGGTTTGGTTAAATTTGGTGTCGTGAGAGCCTTGTGGTTTAGGTTTGAGGTCGTTTCTGAATGGTGGTTGTTGTTGTTGTTTTTTTTTTTAATTTTTTTTTAATTTTTTTTTTTATTTGGTATTGTTTTTGTTACCAAACTCAATGATTTCTCATTATTGGTTTGCATTGTTGGAGTGGATTGTGTACTTTAAGGCAGTTTGACATTATTGTAACCTATTCTTGTGAATCTCTTCATCAAGTTATAAGCAGACCAGAGTAGTTGCTGTTTCTTGACATAGGTTCTATATATTTTTTTTAAATTCTAAAATATTATTGTTTCAATAGTGTTCATATTACATCTAGTTGGTTTAATGCAAGCCTTTATATCATTCCTCTGTTACGGAAAAAAGTTGTCTTCAATAATGCTTTTTATGGATGCATTAATTATAGGATTTGACTTGAGTGTAATAATAGGATTTTCAGAGAGGTTGAGAGGTCGTTTGATGAGGTTTAATGCATCTTTTAGGGCTTTGGTTATTAGGCTTTCTAGTAATTATGATTTGTGTGATTTTATTGGATCTGAGTTCGTTTCTGTAGATAGTTCTTGAACTTCTTTTGTCAGGCTTTCTGTATGTCCTTGTTATTCTAATGAACGTCCAGTTTCTAACCAAAAGAAGGAGTAAATTAAGAAAAGAAAAAGAAAGACGATGCCCCTATGCAGACTGTGGAAATTAGAGAAAATGAAAATGAAAAGTTAAGGAGCAATGCAAGAAATTTCTGGAACATGTAAAGTATATCTTGATTCCTTATAGTATGCCACACAGGACAAGTGTTTTAGTTTCTTCCAGAAGATATCTTTTTCTGATTATTTAATTTTTAACTTAAAATTTATTCCCTCAGTCCTTTTTTTCTACAGGATTTCTGTTGAGTGAAGAATATGTCAAATTGCATGACATGATAGATTTGTTCTTTCATTTAACAACTACTTATTTTAGACTTGACAGTTGGCATGAACCTTGGTTATATTTTGCTTCTGCAGCTCAAAGCTCTTTGCATCTGAAAGTTATATGGTTTCGTCATTCAACTTATATTTGGTGCACTGAACTGCTTTCCTTAGTCCCAAACTATCCATCTCCGGTAATTTGCATTCAGATCCTGCAGTGGAGGAACAGTGCTGGATAG

mRNA sequence

ATGGAAAGGAAAGGAGCAGCCGATCAAAACACCCAAAAAAGCAAAAACACAAAACCGCTATTCATTGATCAACCCAACAAAATATTACATATAAATTATAAACAAAAAAAAAAGCCACAAACTCCAAATCAAAATTCCCTTCTTCAATTTTCCCTCAATTTCTTCCTCTTAATCAAAACCTTCCCTCCAATTCCTTCTCTCCTTCTTCAATCCGATTCAGCTCAAAGCTCTTTGCATCTGAAAGTTATATGGTTTCGTCATTCAACTTATATTTGGTGCACTGAACTGCTTTCCTTAGTCCCAAACTATCCATCTCCGGTAATTTGCATTCAGATCCTGCAGTGGAGGAACAGTGCTGGATAG

Coding sequence (CDS)

ATGGAAAGGAAAGGAGCAGCCGATCAAAACACCCAAAAAAGCAAAAACACAAAACCGCTATTCATTGATCAACCCAACAAAATATTACATATAAATTATAAACAAAAAAAAAAGCCACAAACTCCAAATCAAAATTCCCTTCTTCAATTTTCCCTCAATTTCTTCCTCTTAATCAAAACCTTCCCTCCAATTCCTTCTCTCCTTCTTCAATCCGATTCAGCTCAAAGCTCTTTGCATCTGAAAGTTATATGGTTTCGTCATTCAACTTATATTTGGTGCACTGAACTGCTTTCCTTAGTCCCAAACTATCCATCTCCGGTAATTTGCATTCAGATCCTGCAGTGGAGGAACAGTGCTGGATAG

Protein sequence

MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKTFPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG*

Homology

[Close]

BLAST of CsaV3_3G040340 vs. NCBI nr
Match: KGN59459.1 (hypothetical protein Csa_002698 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT 60
           MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT
Sbjct: 1   MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT 60

Query: 61  FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG 120
           FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG
Sbjct: 61  FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG 120

[Close]

BLAST of CsaV3_3G040340 vs. ExPASy TrEMBL
Match: A0A0A0LEX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822110 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT 60
           MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT
Sbjct: 1   MERKGAADQNTQKSKNTKPLFIDQPNKILHINYKQKKKPQTPNQNSLLQFSLNFFLLIKT 60

Query: 61  FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG 120
           FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG
Sbjct: 61  FPPIPSLLLQSDSAQSSLHLKVIWFRHSTYIWCTELLSLVPNYPSPVICIQILQWRNSAG 120

The following BLAST results are available for this feature:

BLAST of CsaV3_3G040340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59459.1	3.1e-62	100.00	hypothetical protein Csa_002698 [Cucumis sativus]	[more]

BLAST of CsaV3_3G040340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEX4	1.5e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822110 PE=4 SV=1	[more]

BLAST of CsaV3_3G040340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G040340.1	CsaV3_3G040340.1	mRNA