CsaV3_3G040250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G040250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 33043832 .. 33044239 (-)
RNA-Seq Expression	CsaV3_3G040250
Synteny	CsaV3_3G040250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTTCCTTACAACAAAGAGGTTTTATTTTTTCATTCAAGATTTTTCTTCCATGTTTCCCGGCCACTCAAAAAAAGTCGTCGGTGGAGGTTTTGTCCACGTTTTTCTCAAGACCAAAATTCTTGTAGTGTTGGTTGCATAAATTTCACTAACGTTTTTCTTTGGTTAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACGTCATCTATATTTGATGGTAAACTTCTGCAGTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCG

mRNA sequence

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTTCCTTACAACAAAGAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCG

Coding sequence (CDS)

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTTCCTTACAACAAAGAGATCTTTCGACGACGGTTTTGACGTAGGAGGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGATTCTCGGGCTGCCG

Protein sequence

MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVATGGAAASSATVGDSRAAX

Homology

[Close]

BLAST of CsaV3_3G040250 vs. NCBI nr
Match: KAE8651183.1 (hypothetical protein Csa_002001, partial [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGDSRAA 77
          GGAAASSATVGDSRAA
Sbjct: 61 GGAAASSATVGDSRAA 76

[Close]

BLAST of CsaV3_3G040250 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18
Identity = 63/87 (72.41%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL SFLT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGDSRAA 77
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

[Close]

BLAST of CsaV3_3G040250 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGDSRAA 77
          GGAAASSATVGDSRAA
Sbjct: 61 GGAAASSATVGDSRAA 76

[Close]

BLAST of CsaV3_3G040250 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 63/87 (72.41%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL SFLT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGDSRAA 77
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

[Close]

BLAST of CsaV3_3G040250 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 63/87 (72.41%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL SFLT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGDSRAA 77
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

The following BLAST results are available for this feature:

BLAST of CsaV3_3G040250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651183.1	3.0e-31	100.00	hypothetical protein Csa_002001, partial [Cucumis sativus]	[more]
XP_008443266.1	3.9e-18	72.41	PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc...	[more]

BLAST of CsaV3_3G040250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ9	1.5e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1	[more]
A0A5D3DPE0	1.9e-18	72.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B754	1.9e-18	72.41	uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=...	[more]

BLAST of CsaV3_3G040250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G040250.1	CsaV3_3G040250.1	mRNA