CsaV3_3G040160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G040160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	VQ domain-containing protein
Location	chr3: 32965687 .. 32965989 (-)
RNA-Seq Expression	CsaV3_3G040160
Synteny	CsaV3_3G040160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTG

mRNA sequence

ATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTG

Coding sequence (CDS)

ATGAGGGTTCACACAAGCGCATCTGAATTTAGAGCCTTAGTCCAAGAACTAACGGGACGAGATGCGGAGTTTCCTGACCCGACTAAGTTCTATCCAGCGTCGTCGTGCGAGATCATGAATGATGATGATGTTGAGAAGAAAGTAGTAGCAGCAGAAGGAGAGGAGGATGAGCAAGAACTGTTGATTGATTCAAGCTGTGATGATGATTTCTTAAGGAGTTCATATGAAAGCTTGGAGGATATTTTGAGGAGAGATGTGATGGAGAACTTTGGAGCCATCTCTACATCTTTATTCAATCCTTTG

Protein sequence

MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL

Homology

[Close]

BLAST of CsaV3_3G040160 vs. NCBI nr
Match: KAE8651179.1 (hypothetical protein Csa_002123, partial [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.0e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL
Sbjct: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL
Sbjct: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 101

[Close]

BLAST of CsaV3_3G040160 vs. NCBI nr
Match: XP_011652185.1 (uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.0e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL
Sbjct: 43  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 102

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL
Sbjct: 103 LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 143

[Close]

BLAST of CsaV3_3G040160 vs. NCBI nr
Match: XP_008443611.1 (PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sigma factor binding protein 2 [Cucumis melo var. makuwa] >TYK25522.1 sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 5.7e-38
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQEL
Sbjct: 43  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQEL 102

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPL
Sbjct: 103 LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPL 141

[Close]

BLAST of CsaV3_3G040160 vs. NCBI nr
Match: XP_022147780.1 (sigma factor binding protein 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 9.9e-14
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+  
Sbjct: 39  MRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEEAS 98

Query: 61  L----IDSSCDDDFLRSSYESLEDILRRD-VMENFGAISTSL 98
           L         +DDFL S YES E++L R+ +MENF   S S+
Sbjct: 99  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV 135

[Close]

BLAST of CsaV3_3G040160 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           M+V TSASEF ALVQELTG+DA+FPDP+KF P++ C+     D     V+  G++D    
Sbjct: 65  MKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASN 124

Query: 61  LI----------DSSCDDDFLRSSYESLEDIL 83
           LI          D   +DD L S Y+  +D++
Sbjct: 125 LIVNSNNPSLVDDVPAEDDILGSFYDDFDDLI 156

[Close]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL
Match: A0A0A0LFH5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL
Sbjct: 43  MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 102

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL
Sbjct: 103 LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 143

[Close]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL
Match: A0A5D3DPQ4 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006730 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQEL
Sbjct: 43  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQEL 102

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPL
Sbjct: 103 LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPL 141

[Close]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL
Match: A0A1S3B8H6 (uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDP+KFYPA SCEI+  +D+EKKVVA +GE+DEQEL
Sbjct: 43  MRVHTSASEFRALVQELTGRDAEFPDPSKFYPA-SCEIVM-NDLEKKVVADQGEDDEQEL 102

Query: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 102
           LIDSSCDDDF RSS+ESLEDILRRDVMENFGAISTSL NPL
Sbjct: 103 LIDSSCDDDFWRSSFESLEDILRRDVMENFGAISTSLINPL 141

[Close]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL
Match: A0A6J1D137 (sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016633 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-14
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           MRVHTSASEFRALVQELTGRDAEFPDP KF+ AS    + + ++EK     EG++DE+  
Sbjct: 39  MRVHTSASEFRALVQELTGRDAEFPDPAKFHQASI--DVGEMNLEKN---REGDDDEEAS 98

Query: 61  L----IDSSCDDDFLRSSYESLEDILRRD-VMENFGAISTSL 98
           L         +DDFL S YES E++L R+ +MENF   S S+
Sbjct: 99  LDVATTMEDSNDDFLESPYESFEEMLMREMLMENFAVPSRSV 135

[Close]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-08
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60
           M+V TSASEF ALVQELTG+DA+FPDP+KF P++ C+     D     V+  G++D    
Sbjct: 46  MKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASN 105

Query: 61  LI----------DSSCDDDFLRSSYESLEDIL 83
           LI          D   +DD L S Y+  +D++
Sbjct: 106 LIVNSNNPSLVDDVPAEDDILGSFYDDFDDLI 137

The following BLAST results are available for this feature:

BLAST of CsaV3_3G040160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651179.1	8.0e-48	100.00	hypothetical protein Csa_002123, partial [Cucumis sativus]	[more]
XP_011652185.1	8.0e-48	100.00	uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
XP_008443611.1	5.7e-38	87.13	PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sig...	[more]
XP_022147780.1	9.9e-14	53.92	sigma factor binding protein 2, chloroplastic-like [Momordica charantia]	[more]
XP_008455708.1	3.6e-08	42.39	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]

BLAST of CsaV3_3G040160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFH5	3.9e-48	100.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=...	[more]
A0A5D3DPQ4	2.8e-38	87.13	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B8H6	2.8e-38	87.13	uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=...	[more]
A0A6J1D137	4.8e-14	53.92	sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A5A7SJV9	1.8e-08	42.39	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of CsaV3_3G040160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 1..22 e-value: 1.8E-10 score: 40.1
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 1..96
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G040160.1	CsaV3_3G040160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity