CsaV3_3G039870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	TFIIS N-terminal domain-containing protein
Location	chr3: 32759208 .. 32763718 (+)
RNA-Seq Expression	CsaV3_3G039870
Synteny	CsaV3_3G039870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGAGAGAAGAGGAGAGAGAGAGGTTTTGTTTGATGGATTTGGTGCCAAGAAAGAAAGAGAGAACATATTGAAGAGAAGGAGTTTTTGGGTTTTTGGTTATGTGTACTCCAAATTCTGTGCCCTTTACGGAGCACCCAGTTTTGGTTCTAATCTCTTTAAAAAATTTGTAAGAGAGAGAGAGAGAACCAAACAAACAAACAACAAAAACCCATTTCCATTTCTAAATCCATTCTCCCATTGAAAAAGAAAAGAGGGATTGAATTGAAAGATTGAATTCTTTGTTCTTATTTTCTCTTCTCTTTCCTTTTTCTCTTCGTTTCTCTTCTCTTTCCATTTCCCATATTCCCGATATTTCTTCTCCACAGCAAATCCCGGAGCTTTTCCGGGATTGAAGAGAAGCAACCAAGTTAATTTCTCTGTTACTACTACCCCTTTTTCAAATTTTTTGAACAATCCCACAAAACCACAACTTGGGTTTTGATCAATATCCTGTTTTGTTCTTGATCTGATCCTTAATTTTCATCAAAAGAAGAAACGAAATCGAGCACCAATACTTACTCTACACACATTAACCAACTCTTTTTTTTTTTTTTTTTTTTTGTGTTTAAACGGATGAAACTCCGGCTGTTAATGGGTTTGGAGCTAACGATTTTTTCTGGAAATCGGTTTCTTGTGGTGCTGGATTAGTGTTAGATAAGGCGGGGTCTTCTGTTTTGGGTGTTGATTTCTTTCAAAACCCATCTTCAATCAGCTGGGTTGAACCCCAATTGCTTGCGTTTCTTCATATTTAGGTTTTTGTTTTCTCACGGCGATGGTATTCTCACTTCGATTCTGAGTATTTCGTTGGAATTTCATCTGGGTTTGATCAACGTTAGTTTCTCCAGATTCCGATCATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGTCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGGTAACAATTGATTTTAATGTTTTCATTTTCTGGGATGTTTATTTGTCCCTCATGATGATCATTGTTCTGTTTGTGTGTGTTGTTGTGCAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGTGATTTGAATTGTTCTGTTTGCCCTTGCATTTCTTGAGGGGACTTAGATTTTGTCGATTGTTTTAGTTTCTAATGAAAATCTGGACTCAAGTTTTGAGGCGTTTTCTCCCTTTATCAGGCAACAGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCATGTACTAAATCTTTCCTCCAAAGTTCATTTAGTGTAGATGATATGTGATGAATGTCCAAAGTGAATTTTCTGTTGACTCTCTTTATGGCACACCTTCAATATGCTTCCTTTCTTTTTTATTCTGTCCACATTTGTCTTCAAAGTTCTTTACTTTGCTGGTGATTTGAATTGTTCACTTTGCTCTTCATTTCTTTATGGCACCTTCAAAGTTCTATAGATCTTTTGTCCGAGTTTTATGTATGGCTTGCTGCATAGGATCAACAGAGAATAACCAATTCCGACCATTCCCTGTCCGTCATTTTGTTTATTGAGTGGATGAAGAGCTTTTCTAGCTCATCTGTTTCTTTACAACTTGTTGCTTACTAGGAGAGGCCCCCATCTGCCATGCCCCATCTTCTGAACTTTCTCATCCTATAGATATATCCGGTCTTTGATAAAGTTCACATTCATAATTCACTTAATGCAGTTAGTAGATAAGGAAGATATCATTTTCAAGATTCTTGTTGCTGCTCATTGTTACTTTACTTTGTTTGAGAGTAAAAGATCTACTTTTTGAATTGCAGGGAGTGGAAAGAAATGGTGGACTTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTAGAGTTTGTTCACTACGCATTTCATCTATTATTTCTTGCCATTTTTCAAGAGTTCTTTATTGAGAAATGCTTTTGTTTTCGTTGACAAAAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACTCAGCCCACATCGATGGAGCTCTCACAAGTACGTCTCTATTTTCTTTTTGTATTCAGTTTTGCTATTCTGAAGAGAAGTTACCTACTTCAAGCTGCATCGGTTCTAATCAACTGTATTTTACTTTCCGTTCCTTGGTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCATTATGCAATTTCTTACATCTTCAGTTTTTACCGTTTCTTAGATTCATGATTACGAATTGGGAACTATGTTGTTTCAGATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGGGCTCTTGAGGGCACAGAAGCTAAGCACAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAGCAAGATGTAAGTACAGGAATATCCAGATCGTAACTTGTAAAGTAATTTGGTTTGACATGTGCACTTTTACCTGATTTGTTTGATTTATGTTTACCAGAACTTCAAGTGCTCAGATGAGGTCGCAGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGTTTAGTTTTCCATCCGTGCTTCTATCAATTCTGATACCGATTTCATGGGAAATATAAAAGGTTTATTACTCAACGAATCCAAGAAACAATAGCTAAATGTTTTTGAGTTTGACAATTTGGTTAGGACATCCAAATTAATGGTTTTTTAAATGCATTGCATAAAATTTGTGACTATATTCTCGTAAGTTCTCGAAAATTCTGACTCATGGTGTTTATTCAACAGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATTGGCCACAGAAATCCACATCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGGCGGCGTTAGGATCGTCGATATAATAAGGTAGAAGACTAATGCTTCCAGCAAACTGTTTGAGTGACTTCCATCTAGAATCAGGTGGAAGATCATGATGCTAAAGCTCCCTGGCAAACAGTGTCTTGACCTGACCGACTTCGCTTGAAGGTAAACAACAAAAAAACTTGGTTTCAGTCTGTCGTGCCAGAGAAGGTGATTCCGGTTCCGATCCCGAGGAGAGTTGGAACGAAAAAAAAAATGCCCATTTCCTACTTTAAGTACATTTTCAAGTATAGAGAACTTCTAATTGGAATTTGGGAGGCAAAATTATATAGCTTTATCGGTGGTTGTTCTGGGAGTTTTGACTTGGTTATCTCTTACATAATGACTGTATAGAACCCCTCATTTGATATCCTCTTCACTTACTTCACTGACTACTTCTCTTATAGACACTTTCCCCCTTCTTTCTTACATTCAAGGAAGACTTATTCCTTCCATACTGTGAGATTAATGATAATGTAAGATAAATTGCACAAAAAGAAGGTGCATTCCCATAAACAGTATAAAGTCATCTCTGTATACTTCTTCATATAAATGCCAAATAATTGTTCTCACAATTTGTAGCTTTTGTTCTCATGGAATGATGGCCAATGATTCTCATTCAAATGCTGTTCCTTTTTGTTCTAAAGCTGTTAGATTCCTTGAGTTTGGTTCGTTTCAGCCTCTTGATTCTCGTTGATACACGTAACAAGACACATTTATTTTCAATGTTACTGAAAATCATGGAAAGGTTGTGGATGAGTTGTATTGACATCTTGAACTTTTGGTGAAATGCAAATTTATGTTTAAAAAGAAAGTTAGGAAGGTGAGATGGAGTTGGATAGTTAGTAAATGTTTCCCA

mRNA sequence

ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGTCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGCAACAGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACTTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACTCAGCCCACATCGATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGGGCTCTTGAGGGCACAGAAGCTAAGCACAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAGCAAGATAACTTCAAGTGCTCAGATGAGGTCGCAGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATTGGCCACAGAAATCCACATCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGGCGGCGTTAG

Coding sequence (CDS)

ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGTCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGCAACAGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACTTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACTCAGCCCACATCGATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGGGCTCTTGAGGGCACAGAAGCTAAGCACAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAGCAAGATAACTTCAAGTGCTCAGATGAGGTCGCAGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATTGGCCACAGAAATCCACATCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGGCGGCGTTAG

Protein sequence

MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR*

Homology

[Close]

BLAST of CsaV3_3G039870 vs. NCBI nr
Match: XP_004136624.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativus] >KGN59410.1 hypothetical protein Csa_002527 [Cucumis sativus])

HSP 1 Score: 878.2 bits (2268), Expect = 3.0e-251
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. NCBI nr
Match: XP_008443218.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo] >KAA0053912.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa] >TYK25493.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa])

HSP 1 Score: 861.3 bits (2224), Expect = 3.7e-246
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVD+WVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLR QKLSTEQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. NCBI nr
Match: XP_038904902.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Benincasa hispida])

HSP 1 Score: 819.7 bits (2116), Expect = 1.2e-233
Identity = 428/453 (94.48%), Postives = 438/453 (96.69%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSK IRHLARVLIMEWKEMVD WV+ATAAVQGAEVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQGAEVTPDSKNKSASV 240

Query: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300
           KEED+Y EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQK 360
           TSNGNQNP R NQQT  EVNVL+KEN TQMKEQVVKP N+PSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKP-NRPSSNTNSGLLRPQKLSTEQK 360

Query: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NRNWANGRR
Sbjct: 421 VMELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. NCBI nr
Match: XP_038904903.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Benincasa hispida])

HSP 1 Score: 810.4 bits (2092), Expect = 7.6e-231
Identity = 426/453 (94.04%), Postives = 436/453 (96.25%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSK IRHLARVLIMEWKEMVD WV+ATAAVQ  EVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQ--EVTPDSKNKSASV 240

Query: 241 KEEDDY-EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300
           KEED+Y EEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQK 360
           TSNGNQNP R NQQT  EVNVL+KEN TQMKEQVVKP N+PSSNTNSGLLR QKLSTEQK
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKP-NRPSSNTNSGLLRPQKLSTEQK 360

Query: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           VMELHDLPKQG+GHRNPHLKSGG+NRNWANGRR
Sbjct: 421 VMELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 450

[Close]

BLAST of CsaV3_3G039870 vs. NCBI nr
Match: KAG6596180.1 (putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027717.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 723.0 bits (1865), Expect = 1.6e-204
Identity = 381/452 (84.29%), Postives = 410/452 (90.71%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   DGETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQ+S+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.4e-91
Identity = 232/466 (49.79%), Postives = 285/466 (61.16%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGETGFKSDFVRDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N EDE + VL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVN LRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVL--- 243

Query: 245 EDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSN 304
               EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  N
Sbjct: 244 ---DEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN 303

Query: 305 GNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNN-KPSSNTN-SGLLRAQKLSTEQKD 364
             +                 K   TQM+ Q     + KPSS T+  G  R  K STEQ+ 
Sbjct: 304 IAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRM 363

Query: 365 NHEKFQ-RKLEKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESYQ 424
            +E     K EKP I ++             QQ+  K  D      K E  KRKLQESYQ
Sbjct: 364 KNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQ 423

Query: 425 QAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGF-NRNWANGRR 453
             ENAKKQRTIQV+E+  +PKQG   + P LK  G  NRNWANGR+
Sbjct: 424 HHENAKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 5.7e-64
Identity = 181/432 (41.90%), Postives = 241/432 (55.79%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            +   +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 246

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGN 304
             EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V++++  +  S+  
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAG 306

Query: 305 QNPTRCNQQTTREVNVLSK---ENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDN 364
           + P     + T + NV+ +   + +T+ +E  V+P  K S+       R  K S EQ  +
Sbjct: 307 RRP-----KGTNDANVVGRYCNDQQTRREEADVRP-MKHSATDVVEPKRQTKQSREQMVS 366

Query: 365 HEKFQRKLEKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRT 424
               QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRT
Sbjct: 367 --AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRT 379

Query: 425 IQVMELHDLPKQ 430
           IQV+E   +PKQ
Sbjct: 427 IQVLE--TIPKQ 379

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-22
Identity = 123/442 (27.83%), Postives = 196/442 (44.34%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ---RVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSN 127
               V  A  G ++         +  V +  E E    +E    ++ +++ E + N   +
Sbjct: 63  GGGNVTEAAIGRVN---------NGRVHEETEEE---DEEGVTAAAEEEVREKSVNVEDD 122

Query: 128 FSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQA 187
             F     L D+ EQ+S     ++ IKE L +  D S+  L E L+ LE M ++   LQ 
Sbjct: 123 DDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQE 182

Query: 188 TEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVK 247
           T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WV+     Q  ++ P S      + 
Sbjct: 183 TDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS-----LIA 242

Query: 248 EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTS 307
           +ED   ++ L +    +   F   P                 P+N             +S
Sbjct: 243 DEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNG----------YSSS 302

Query: 308 NGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDN 367
           + N N T                 + + K + V P  +  S + +               
Sbjct: 303 SKNSNIT-----------------EPERKPRPVAPQPRRESPSPA--------------- 339

Query: 368 HEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVM 427
                    KP+ P  +QQ   +  D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM
Sbjct: 363 ---------KPSRPSPSQQTIPR--DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVM 339

Query: 428 ELHDLPKQGIGHRNPHLKSGGF 444
           ++HD+PK          K GGF
Sbjct: 423 DIHDIPKP---------KKGGF 339

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy Swiss-Prot
Match: Q8CB77 (Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3)

HSP 1 Score: 47.0 bits (110), Expect = 6.7e-04
Identity = 30/96 (31.25%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 162 LFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQAT 221
           L + L++L ++ ++VD L  T +GK VN  RKH  +++ + AR L+ +WK++V +   + 
Sbjct: 26  LLKYLKKLSILPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVPVERNSE 85

Query: 222 AAVQGAEVTPDSKNKSAAVKEEDD----YEEEGLPS 254
           A  Q  E     K    A++ E++    Y+E   PS
Sbjct: 86  AEDQDFEKNNSRKRPRDALQREEELEGNYQESWKPS 119

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 878.2 bits (2268), Expect = 1.4e-251
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 861.3 bits (2224), Expect = 1.8e-246
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVD+WVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLR QKLSTEQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 861.3 bits (2224), Expect = 1.8e-246
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF  DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVD+WVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLR QKLSTEQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 1.0e-204
Identity = 381/452 (84.29%), Postives = 409/452 (90.49%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   DGETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+   + 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 8.5e-204
Identity = 385/458 (84.06%), Postives = 410/458 (89.52%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   D ETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVDLWV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKL 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NSGL R QK 
Sbjct: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360

Query: 361 STEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           QRTIQVMELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of CsaV3_3G039870 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-92
Identity = 232/466 (49.79%), Postives = 285/466 (61.16%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGETGFKSDFVRDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N EDE + VL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVN LRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVL--- 243

Query: 245 EDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSN 304
               EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  N
Sbjct: 244 ---DEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN 303

Query: 305 GNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNN-KPSSNTN-SGLLRAQKLSTEQKD 364
             +                 K   TQM+ Q     + KPSS T+  G  R  K STEQ+ 
Sbjct: 304 IAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRM 363

Query: 365 NHEKFQ-RKLEKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESYQ 424
            +E     K EKP I ++             QQ+  K  D      K E  KRKLQESYQ
Sbjct: 364 KNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQ 423

Query: 425 QAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGF-NRNWANGRR 453
             ENAKKQRTIQV+E+  +PKQG   + P LK  G  NRNWANGR+
Sbjct: 424 HHENAKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CsaV3_3G039870 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 246.5 bits (628), Expect = 4.1e-65
Identity = 181/432 (41.90%), Postives = 241/432 (55.79%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            +   +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 246

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGN 304
             EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V++++  +  S+  
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAG 306

Query: 305 QNPTRCNQQTTREVNVLSK---ENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDN 364
           + P     + T + NV+ +   + +T+ +E  V+P  K S+       R  K S EQ  +
Sbjct: 307 RRP-----KGTNDANVVGRYCNDQQTRREEADVRP-MKHSATDVVEPKRQTKQSREQMVS 366

Query: 365 HEKFQRKLEKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRT 424
               QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRT
Sbjct: 367 --AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRT 379

Query: 425 IQVMELHDLPKQ 430
           IQV+E   +PKQ
Sbjct: 427 IQVLE--TIPKQ 379

[Close]

BLAST of CsaV3_3G039870 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 203.0 bits (515), Expect = 5.2e-52
Identity = 120/269 (44.61%), Postives = 157/269 (58.36%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            +   +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 232

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQ 274
             EEE  PSPP D    +  +P   ELSQ
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of CsaV3_3G039870 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-23
Identity = 123/442 (27.83%), Postives = 196/442 (44.34%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ---RVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSN 127
               V  A  G ++         +  V +  E E    +E    ++ +++ E + N   +
Sbjct: 63  GGGNVTEAAIGRVN---------NGRVHEETEEE---DEEGVTAAAEEEVREKSVNVEDD 122

Query: 128 FSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQA 187
             F     L D+ EQ+S     ++ IKE L +  D S+  L E L+ LE M ++   LQ 
Sbjct: 123 DDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQE 182

Query: 188 TEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAVK 247
           T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WV+     Q  ++ P S      + 
Sbjct: 183 TDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS-----LIA 242

Query: 248 EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTS 307
           +ED   ++ L +    +   F   P                 P+N             +S
Sbjct: 243 DEDSPVQKALHNGSRQQVPDFGYSPV----------------PQNG----------YSSS 302

Query: 308 NGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDN 367
           + N N T                 + + K + V P  +  S + +               
Sbjct: 303 SKNSNIT-----------------EPERKPRPVAPQPRRESPSPA--------------- 339

Query: 368 HEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVM 427
                    KP+ P  +QQ   +  D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM
Sbjct: 363 ---------KPSRPSPSQQTIPR--DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVM 339

Query: 428 ELHDLPKQGIGHRNPHLKSGGF 444
           ++HD+PK          K GGF
Sbjct: 423 DIHDIPKP---------KKGGF 339

[Close]

BLAST of CsaV3_3G039870 vs. TAIR 10
Match: AT3G48060.1 (BAH domain ;TFIIS helical bundle-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 8.9e-04
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 159 DPVLFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWV 218
           D  L   LR L+ + ++++ LQ   IGK+VN LR H +  I   AR L+  WK+ V+  +
Sbjct: 354 DDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSLVDTWKKRVEAEM 413

Query: 219 QA 221
            A
Sbjct: 414 DA 415

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136624.1	3.0e-251	100.00	probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativu...	[more]
XP_008443218.1	3.7e-246	98.01	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]
XP_038904902.1	1.2e-233	94.48	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Ben...	[more]
XP_038904903.1	7.6e-231	94.04	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Ben...	[more]
KAG6596180.1	1.6e-204	84.29	putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucur...	[more]

BLAST of CsaV3_3G039870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	1.4e-91	49.79	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	5.7e-64	41.90	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	2.4e-22	27.83	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q8CB77	6.7e-04	31.25	Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3	[more]

BLAST of CsaV3_3G039870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBK9	1.4e-251	100.00	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]
A0A5A7UDQ2	1.8e-246	98.01	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	1.8e-246	98.01	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A6J1FCK1	1.0e-204	84.29	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]
A0A6J1I7W1	8.5e-204	84.06	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]

BLAST of CsaV3_3G039870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	1.0e-92	49.79	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	4.1e-65	41.90	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	5.2e-52	44.61	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	1.7e-23	27.83	Transcription elongation factor (TFIIS) family protein	[more]
AT3G48060.1	8.9e-04	37.10	BAH domain ;TFIIS helical bundle-like domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 392..419
None	No IPR available	COILS	Coil	Coil	coord: 311..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..452
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..354
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 143..215 e-value: 5.48585E-20 score: 81.971
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 141..216 e-value: 2.1E-14 score: 63.9
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 133..226 e-value: 3.2E-20 score: 73.7
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 139..222
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 166..214 e-value: 1.2E-11 score: 44.4
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 142..217 score: 20.881365
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039870.1	CsaV3_3G039870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus