CsaV3_3G039840 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	chr3: 32720960 .. 32722219 (+)
RNA-Seq Expression	CsaV3_3G039840
Synteny	CsaV3_3G039840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTATGCAATTTTATTTGAATCCCCAATTTTTCTTTCAAAACCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAAAGATGGAGAAAGCCAATAGTGAACGCTCAAACTCGGTTAGAAGACAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCAAAAAATTTAGGGTCATCCTCAAACTCTACGAGCTCATGAACAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATTTGTTCGACTTATTTCCTCATCCGGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAACGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTAATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATAAGAATGGAGCTATTGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGCGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGTGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCATATGAGAAGAGACAAGGCTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTACTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTGGAGCGACTTGTCCATTTTAGGCGTGATTTCGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAATATTCTACATATCAACCAAGGGGACCACCCAAATTGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGTCGCCGACACACGAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAACCGAAAATGGAGACTGGCTATCTAAAAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTCGATTGA

mRNA sequence

ATGAGGTATGCAATTTTATTTGAATCCCCAATTTTTCTTTCAAAACCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAAAGATGGAGAAAGCCAATAGTGAACGCTCAAACTCGGTTAGAAGACAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCAAAAAATTTAGGGTCATCCTCAAACTCTACGAGCTCATGAACAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATTTGTTCGACTTATTTCCTCATCCGGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAACGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTAATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATAAGAATGGAGCTATTGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGCGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGTGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCATATGAGAAGAGACAAGGCTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTACTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTGGAGCGACTTGTCCATTTTAGGCGTGATTTCGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAATATTCTACATATCAACCAAGGGGACCACCCAAATTGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGTCGCCGACACACGAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAACCGAAAATGGAGACTGGCTATCTAAAAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTCGATTGA

Coding sequence (CDS)

ATGAGGTATGCAATTTTATTTGAATCCCCAATTTTTCTTTCAAAACCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAAAGATGGAGAAAGCCAATAGTGAACGCTCAAACTCGGTTAGAAGACAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCAAAAAATTTAGGGTCATCCTCAAACTCTACGAGCTCATGAACAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATTTGTTCGACTTATTTCCTCATCCGGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAACGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTAATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATAAGAATGGAGCTATTGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGCGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGTGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCATATGAGAAGAGACAAGGCTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTACTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTGGAGCGACTTGTCCATTTTAGGCGTGATTTCGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAATATTCTACATATCAACCAAGGGGACCACCCAAATTGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGTCGCCGACACACGAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAACCGAAAATGGAGACTGGCTATCTAAAAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTCGATTGA

Protein sequence

MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD*

Homology

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BLAST of CsaV3_3G039840 vs. NCBI nr
Match: XP_004136766.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN59407.1 hypothetical protein Csa_001413 [Cucumis sativus])

HSP 1 Score: 846.7 bits (2186), Expect = 8.8e-242
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

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BLAST of CsaV3_3G039840 vs. NCBI nr
Match: XP_008443210.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443212.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443213.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 817.0 bits (2109), Expect = 7.5e-233
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

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BLAST of CsaV3_3G039840 vs. NCBI nr
Match: KAA0053914.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 786.6 bits (2030), Expect = 1.1e-223
Identity = 385/401 (96.01%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRK 78
           SRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQL+KFRVILKL+ELM NRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDF 318
           NWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDV+RLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           RHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of CsaV3_3G039840 vs. NCBI nr
Match: XP_038903898.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903900.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 776.2 bits (2003), Expect = 1.5e-220
Identity = 379/419 (90.45%), Postives = 400/419 (95.47%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I  ES + LSKP  SRIPFGPFNHFCQ+RWRKP+ NAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYKISLESALSLSKPKISRIPFGPFNHFCQRRWRKPVENAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
            +KFR+ILKL ELM +RKRGPFVSLQIMSRWRNIVG++IGIGEF+HKYPH+FD+FPHPVR
Sbjct: 61  FQKFRIILKLRELMIDRKRGPFVSLQIMSRWRNIVGLKIGIGEFVHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVIND+EIETVQRLKKLLMMSVNG LHVHALRLIS+ELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDLEIETVQRLKKLLMMSVNGALHVHALRLISKELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGF ESILEKYSDDFRLVDLEIVELVEKH+NGA+AEVE+WREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFGESILEKYSDDFRLVDLEIVELVEKHENGAVAEVEQWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGF IEGGFREKLRNWQRLPY +PYEKRQGFG RSSGG+QRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFRIEGGFREKLRNWQRLPYAKPYEKRQGFGFRSSGGMQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVD+ERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCL+EP
Sbjct: 301 TVEKLVDIERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLIEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKEND+A  NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDSAAYNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of CsaV3_3G039840 vs. NCBI nr
Match: XP_022937832.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_022937840.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 734.2 bits (1894), Expect = 6.4e-208
Identity = 360/414 (86.96%), Postives = 386/414 (93.24%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDRTRDLKLDKLATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           GF I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ R EKRAVAVLHELLSLTVEKL
Sbjct: 243 GFKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGDWLSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

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BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-64
Identity = 143/359 (39.83%), Postives = 208/359 (57.94%), Query Frame = 0


Query: 36  KPIVNAQT--RLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFV--SLQIMSRW 95
           KP   + T  + +DR RD   D      KK R ++K + L+ ++         L  ++R 
Sbjct: 32  KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query: 96  RNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 155
             +   +   G FL K+PH+F+++ HPV+R L CR+T K    ++ E   + D   + V 
Sbjct: 92  LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT 151

Query: 156 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE-----IVELV 215
           RL+KL+MMS  G + +  +R+   E GLP+ F  S++ K+   FRL+D E      +E+V
Sbjct: 152 RLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIV 211

Query: 216 EKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYT 275
           EK  N +I  +E+ RE E+R K +   DV+++F +NFP GF I   FR  +  WQRLPY 
Sbjct: 212 EKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYW 271

Query: 276 QPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRE 335
            PYE   G+  RS     R EKR+VA +HELLSLTVEK + +ER+ HFR    +   ++E
Sbjct: 272 SPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKE 331

Query: 336 LLLKHPGIFYISTKGT---TQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 383
            LL+H GIFYIST+G       VFLRE Y +G LVEPN +Y+ RR++ +LVL+  R  K
Sbjct: 332 FLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-35
Identity = 121/386 (31.35%), Postives = 204/386 (52.85%), Query Frame = 0


Query: 35  RKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYE-LMNNRKRGPFVSLQIMSRWRN 94
           R+  V AQ  ++ R +++  D +  + KK +++LKL   L++N  R   +SL+ + R+R 
Sbjct: 51  RRLAVVAQAAVK-RRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDR--VMSLRDLGRFRR 110

Query: 95  IVGV--RIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 154
            +G+  +  +   L ++P +F++    V  +L  R+T     L   E ++ N+ E   V 
Sbjct: 111 DLGLTRKRRLIALLKRFPGVFEVVEEGV-YSLRFRLTPAAERLYLDELHLKNESEGLAVT 170

Query: 155 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEI---VELVEK 214
           +L+KLLMMS +  + +  +  +  +LGLP  FR++I  +Y   FR+V ++    +EL   
Sbjct: 171 KLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHW 230

Query: 215 HKNGAIAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQRL 274
               A++  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ +
Sbjct: 231 DPELAVSAAEV-AEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEM 290

Query: 275 PYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVN 334
           PY  PY     F H  SG  ++ EK A  V+HE+LSLT+EK   V+ L HFR +F    +
Sbjct: 291 PYISPY---SDFSHLRSGSAEK-EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQS 350

Query: 335 IRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQ 394
           +R +L++HP +FY+S KG    VFLREAY    LVE + + +++ KM+ LV + R   + 
Sbjct: 351 LRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRG 410

Query: 395 LESSMEIKENDNATENGDWLSKSEGS 410
           + ++ E  E D    NG     SEGS
Sbjct: 411 VPATSE--EADRT--NGAAQMLSEGS 423

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.8e-35
Identity = 117/386 (30.31%), Postives = 198/386 (51.30%), Query Frame = 0


Query: 33  RWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWR 92
           R R   V AQ  ++ R ++   D +  + KK +++LKL  ++   +    +SL+ + R+R
Sbjct: 43  RPRPAAVVAQAAVK-RRKEAPFDTVIQRDKKLKLVLKLRNIL-VAQPDRVMSLRELGRFR 102

Query: 93  NIVGV--RIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETV 152
             +G+  +  +   L ++P +FD+    V  +L  R+T     L   E  + N+ E   V
Sbjct: 103 RDLGLTRKRRLIALLRRFPGVFDVVEEGV-YSLRFRLTPAAERLYLDELRLRNESEGLAV 162

Query: 153 QRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE---IVELVE 212
            +L+KLLMMS    + +  +  +  +LGLP  FR+++  +Y   FR+V ++    +EL  
Sbjct: 163 AKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTH 222

Query: 213 KHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQR 272
                A++  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ 
Sbjct: 223 WDPELAVSAAE-LAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKE 282

Query: 273 LPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEV 332
           +PY  PY     F H  SG  ++ EK A  V+HE+LSLTVEK   V+ L HFR +F    
Sbjct: 283 MPYISPY---ADFSHLRSGSDEK-EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQ 342

Query: 333 NIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 392
           ++R ++++HP +FY+S KG    VFLREAY    LVE N + +++ KM+ LV + R   +
Sbjct: 343 SLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRR 402

Query: 393 QLESSMEIKENDNAT-ENGDWLSKSE 408
               + E  E  N + ++ D +S  E
Sbjct: 403 AAVGTGEEAEGMNGSLQSRDQVSDEE 420

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.5e-34
Identity = 102/340 (30.00%), Postives = 178/340 (52.35%), Query Frame = 0


Query: 48  RTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGV--RIGIGEFL 107
           R ++L  D +  + KK +++L + +++ ++     +SL+ + ++R  +G+  R      L
Sbjct: 78  RRKELTFDSVVQRDKKLKLVLNIRKILVSQP-DRMMSLRGLGKYRRDLGLKKRRRFIALL 137

Query: 108 HKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTL 167
            KYP +F++       +L  ++T +   L   E  + N++E   V +L+KL+MMS++  +
Sbjct: 138 RKYPGVFEIVEEGA-YSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRI 197

Query: 168 HVHALRLISRELGLPDGFRESILEKYSDDFRLVDL---EIVELVEKHKNGAIAEVE---- 227
            +  +  +  +LGLP  FR++I ++Y   FR+V       +EL       A++  E    
Sbjct: 198 LLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSED 257

Query: 228 KWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHR 287
             R RE  E+ L          +  P G  +      K+  ++ + Y  PY   + F H 
Sbjct: 258 DNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPY---KDFSHL 317

Query: 288 SSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYIS 347
            SG +++ EK A  V+HELLSLT EK   V+ L HFR +F     +R +L++HP +FY+S
Sbjct: 318 RSGTLEK-EKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVS 377

Query: 348 TKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 379
            KG    VFLREAY    L++ +P+ +V+ KM+ LV + R
Sbjct: 378 LKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPR 411

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-22
Identity = 89/310 (28.71%), Postives = 143/310 (46.13%), Query Frame = 0


Query: 83  VSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVI 142
           + +  +S+      V   I  FL K+P +F+ F  P       R+T + T L +QE  V 
Sbjct: 67  IPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVY 126

Query: 143 NDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE- 202
                +   RLKKL++MS +  L +  ++ +   LGLPD + +         FR VD+E 
Sbjct: 127 QTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMED 186

Query: 203 -IVELVEKHKNG--AIAEVEKWREREFR-EKWLSEFDVKYAFPINFPTGFIIEGGFREKL 262
            +  L   +  G   ++ ++K   ++ R E  L E +    FP+    G  +     + L
Sbjct: 187 GVKGLAVDYNGGDKVLSVLQKNAMKKRRGEVSLEEIE----FPLFPSKGCRLRVKIEDWL 246

Query: 263 RNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRD 322
             +Q+LPY  PY+        S       EKR V  LHELL L VE   + ++L+  ++ 
Sbjct: 247 MEFQKLPYVSPYDDYSCLDPSSDIA----EKRVVGFLHELLCLFVEHSAERKKLLCLKKH 306

Query: 323 FAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKM------Q 382
           F +   + +   +HP IFY+S K  T    LRE Y     VE +P+  VR+K        
Sbjct: 307 FGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNS 366

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL
Match: A0A0A0LFE1 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 SV=1)

HSP 1 Score: 846.7 bits (2186), Expect = 4.3e-242
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL
Match: A0A1S3B7J9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4 SV=1)

HSP 1 Score: 817.0 bits (2109), Expect = 3.6e-233
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL
Match: A0A5A7UFE6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006380 PE=4 SV=1)

HSP 1 Score: 786.6 bits (2030), Expect = 5.3e-224
Identity = 385/401 (96.01%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRK 78
           SRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQL+KFRVILKL+ELM NRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDF 318
           NWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDV+RLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           RHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL
Match: A0A6J1FCB5 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444101 PE=4 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 3.1e-208
Identity = 360/414 (86.96%), Postives = 386/414 (93.24%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDRTRDLKLDKLATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           GF I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ R EKRAVAVLHELLSLTVEKL
Sbjct: 243 GFKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGDWLSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

[Close]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL
Match: A0A6J1I6W3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470166 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.9e-205
Identity = 356/414 (85.99%), Postives = 383/414 (92.51%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDR RDLKLD LATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRIRDLKLDTLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMS NGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSANGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           G+ I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ RHEKRAVAVLHELLSLTVEKL
Sbjct: 243 GYKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRHEKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 420
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGD LSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHVSAADNGDCLSKSEGSWVLPILQGFD 416

[Close]

BLAST of CsaV3_3G039840 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 480.3 bits (1235), Expect = 1.6e-135
Identity = 230/398 (57.79%), Postives = 311/398 (78.14%), Query Frame = 0


Query: 25  PFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVS 84
           P   + Q+RW KP+ +AQTRLE+RTRD +LDK+  Q++K  +IL++ +LM+++KRGPFVS
Sbjct: 45  PLYFYNQRRWLKPVDSAQTRLENRTRDHQLDKIIPQIRKLNIILEISKLMSSKKRGPFVS 104

Query: 85  LQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVIND 144
           LQ+MSRW+N+VG+ + +G F+ KYPH F++F HP  +NLCC+IT K   L+ +EENV+ +
Sbjct: 105 LQLMSRWKNLVGLNVNVGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRE 164

Query: 145 MEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVE 204
            E++ V+R+KKLL++S +G L VHALRLI +ELGLP+ FR+SIL KYS +FRLVDLE +E
Sbjct: 165 CEVDAVKRVKKLLLLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLETLE 224

Query: 205 LVEKHKNG-AIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRL 264
           LV++      +A+VE+WRE E+REKWLS+F+  YAFPI+ PTGF IE GFRE+L+NWQR+
Sbjct: 225 LVDRDDESLCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRV 284

Query: 265 PYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVN 324
           PY +PY++++      S G++R EKR VAV+HELLSLTVEK+V+VERL HFR+D  IEVN
Sbjct: 285 PYVKPYDRKE-----ISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVN 344

Query: 325 IRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQ 384
           +RE++LKHPGIFY+STKG++Q +FLREAY+KGCL+EPNPIY VRRKM DLVLL  R+++ 
Sbjct: 345 VREVILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRM 404

Query: 385 L-----ESSMEIKEND-NATENGDWLSKSEGSWVLPIL 416
           L     E+  E K  D   + N DW    +G WVLPIL
Sbjct: 405 LLQREDETHREEKSRDVLISSNEDWEGGRDGDWVLPIL 437

[Close]

BLAST of CsaV3_3G039840 vs. TAIR 10
Match: AT5G45790.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 411.4 bits (1056), Expect = 8.8e-115
Identity = 197/341 (57.77%), Postives = 264/341 (77.42%), Query Frame = 0


Query: 82  FVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENV 141
           F + ++MSRW+N+VG+ + +G F+ KYPH F++F HP  +NLCC+IT K   L+ +EENV
Sbjct: 17  FSTNKLMSRWKNLVGLNVNVGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENV 76

Query: 142 INDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE 201
           + + E++ V+R+KKLL++S +G L VHALRLI +ELGLP+ FR+SIL KYS +FRLVDLE
Sbjct: 77  VRECEVDAVKRVKKLLLLSKHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLE 136

Query: 202 IVELVEKHKNG-AIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNW 261
            +ELV++      +A+VE+WRE E+REKWLS+F+  YAFPI+ PTGF IE GFRE+L+NW
Sbjct: 137 TLELVDRDDESLCVAKVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNW 196

Query: 262 QRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAI 321
           QR+PY +PY++++      S G++R EKR VAV+HELLSLTVEK+V+VERL HFR+D  I
Sbjct: 197 QRVPYVKPYDRKE-----ISRGLERFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGI 256

Query: 322 EVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRH 381
           EVN+RE++LKHPGIFY+STKG++Q +FLREAY+KGCL+EPNPIY VRRKM DLVLL  R+
Sbjct: 257 EVNVREVILKHPGIFYVSTKGSSQTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRY 316

Query: 382 TKQL-----ESSMEIKEND-NATENGDWLSKSEGSWVLPIL 416
           ++ L     E+  E K  D   + N DW    +G WVLPIL
Sbjct: 317 SRMLLQREDETHREEKSRDVLISSNEDWEGGRDGDWVLPIL 352

[Close]

BLAST of CsaV3_3G039840 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 247.3 bits (630), Expect = 2.2e-65
Identity = 143/359 (39.83%), Postives = 208/359 (57.94%), Query Frame = 0


Query: 36  KPIVNAQT--RLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFV--SLQIMSRW 95
           KP   + T  + +DR RD   D      KK R ++K + L+ ++         L  ++R 
Sbjct: 32  KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query: 96  RNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 155
             +   +   G FL K+PH+F+++ HPV+R L CR+T K    ++ E   + D   + V 
Sbjct: 92  LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT 151

Query: 156 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE-----IVELV 215
           RL+KL+MMS  G + +  +R+   E GLP+ F  S++ K+   FRL+D E      +E+V
Sbjct: 152 RLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIV 211

Query: 216 EKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYT 275
           EK  N +I  +E+ RE E+R K +   DV+++F +NFP GF I   FR  +  WQRLPY 
Sbjct: 212 EKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYW 271

Query: 276 QPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRE 335
            PYE   G+  RS     R EKR+VA +HELLSLTVEK + +ER+ HFR    +   ++E
Sbjct: 272 SPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKE 331

Query: 336 LLLKHPGIFYISTKGT---TQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 383
            LL+H GIFYIST+G       VFLRE Y +G LVEPN +Y+ RR++ +LVL+  R  K
Sbjct: 332 FLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

[Close]

BLAST of CsaV3_3G039840 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-62
Identity = 139/358 (38.83%), Postives = 208/358 (58.10%), Query Frame = 0


Query: 48  RTRDLKLDKLATQLKKFRVILKLYE--LMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFL 107
           R+RD   +KL  + K    ++ + +  L N     P +S++ +SR    + +  G   FL
Sbjct: 34  RSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLSRLSQKLHLNRGAASFL 93

Query: 108 HKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTL 167
            KYPH+F +   PV+    CR+T     + +QE   I       V RL +LL MS++ ++
Sbjct: 94  RKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRLVRLLSMSISKSI 153

Query: 168 HVHALRLISRELGLPDGFRESILEKYSDDFRLVD-----LEIVELVEKHKNGA--IAEVE 227
            + A+  + RELGLPD F +S++ K    F+L D       I+ELV++ +      A VE
Sbjct: 154 PLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEEKRLEFEAAVE 213

Query: 228 KWREREFREKWLS--EFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFG 287
           KWR  E  ++  S    +++++F  ++P G  +   F+ K++ WQRLPY  PYE   G  
Sbjct: 214 KWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYVGPYEDMVG-K 273

Query: 288 HRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFY 347
            +S  GV   EKRAVA+ HE L+LTVEK+V+VE++ HFR+ F I++NIR+L L HPG+FY
Sbjct: 274 KKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNIRDLFLDHPGMFY 333

Query: 348 ISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSMEIKEND 395
           +STKG    VFLREAY +G L++PNP+Y  RRK+ DLVLLGR        +  + E +
Sbjct: 334 VSTKGKRHTVFLREAYERGRLIDPNPVYDARRKLLDLVLLGRHAALSESGNTSMSEQE 390

[Close]

BLAST of CsaV3_3G039840 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-38
Identity = 104/317 (32.81%), Postives = 164/317 (51.74%), Query Frame = 0


Query: 78  KRGP--FVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNL-CCRITGKMTAL 137
           KR P  F++ + ++ W+ ++G+ + +  FL +YP LF  FPH    +L C ++T     L
Sbjct: 62  KRSPTGFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALML 121

Query: 138 MKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDD 197
             QEE +    E +TV+RL ++LMM  + T+ + +L  +  +LGLPD + ++++ KY D 
Sbjct: 122 DSQEEIIHQSHEADTVERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDH 181

Query: 198 FRLVDLE----IVELVEKHKNGAIAEVEKWRE------REFREKWLSEFDVKYAFPINFP 257
           F  V        ++LV+     A + ++K  E       E R +          FP++FP
Sbjct: 182 FCFVKASNGNPCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFP 241

Query: 258 TGFIIEGGFREKLRNW----QRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 317
            G+    G ++K++ W    Q+LPY  PY+        S       EKRAVAVLHELLSL
Sbjct: 242 RGY----GAQKKVKAWMDEFQKLPYISPYDDPSNIDPES----DLMEKRAVAVLHELLSL 301

Query: 318 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 377
           T+ K      L   R +  I      L  ++PGIFY+S K  T  V L+E Y +G LV+P
Sbjct: 302 TIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGIFYLSLKCKTTTVILKEGYRRGKLVDP 361

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136766.1	8.8e-242	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein RO...	[more]
XP_008443210.1	7.5e-233	95.47	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PR...	[more]
KAA0053914.1	1.1e-223	96.01	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 prote...	[more]
XP_038903898.1	1.5e-220	90.45	protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ...	[more]
XP_022937832.1	6.4e-208	86.96	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_02293784...	[more]

BLAST of CsaV3_3G039840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q689D6	3.1e-64	39.83	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q65XL5	1.8e-35	31.35	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	8.8e-35	30.31	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	7.5e-34	30.00	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9ZUZ6	1.7e-22	28.71	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of CsaV3_3G039840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFE1	4.3e-242	100.00	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 S...	[more]
A0A1S3B7J9	3.6e-233	95.47	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4...	[more]
A0A5A7UFE6	5.3e-224	96.01	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1FCB5	3.1e-208	86.96	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I6W3	1.9e-205	85.99	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_3G039840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45790.2	1.6e-135	57.79	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.1	8.8e-115	57.77	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G33495.1	2.2e-65	39.83	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G06440.1	1.3e-62	38.83	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	5.1e-38	32.81	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 50..378 e-value: 1.6E-107 score: 359.2
None	No IPR available	PANTHER	PTHR31476:SF12	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 17..418
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 17..418

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039840.1	CsaV3_3G039840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding