CsaV3_3G039820 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32710547 .. 32712966 (+)
RNA-Seq Expression	CsaV3_3G039820
Synteny	CsaV3_3G039820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAACCTGAGTTGTCTAGTCCTTGGAGTTCTTTACCTAGCACAACATCCGAGAGAGAGAAAAAAAAGAGAGCCAGTTAGGTCAGGTAAAATGCGTGCCCAGGTATTAGAGCTTGAGTGGAGTGGGGAACCTCTCTCCTTTTCTAGCCTAAGAAAAACCCGACCCACCTAGTCCTTAAAGTTCTTCACCCAGCACAGTAACCAACCGGTATAGAGAGAAAAAAAGATAGAGCCAATGGGAAAATTATTCAACGGAACGGTGTGATTGCATCTTTGCAGGATTCGTTGAGGGCTCATCAACCGTCTGTTGCGTCCTAATGATGTAAGTTTGATATTTGTTGATAACGAATAATGTGATTGAGAAGCATTTCTAATGCTGGTACACCAGTTTCCCGACTTCAAGGCATTCCCTTACCCGTTTCCTAACATCTAGGCTGTAGCATAGACAACTTTTCCATTAAAGGAAAAAAAAGAGAAGAAGAAGAATCCTTCAATATCGTTTTGTGTAAGGCACTCGAAATCCTAGATTGTGTTCAATACGATTCACAGCTAAGGCAGTATAACATGAGTAGAAAATTGTTAGTTAAGGAATATTTGTAAGAATTTCCGCACAGCAAATTTCATTGAATTTTGTTGCCTATTGTGAAGGGAAAAGACCTACCCTACATATTTTGGCAACAAAATTTTGAAGTTCATGATGCCTTGAAGTTCTTAATTCATTATGTTTGTTGGAGTTGAATACATAATATGAAATTTGAAATGGCGTCATTAAAATATGCCTCTGTTGTAATTTTAAGGAGGTTCGACATTTTTCCCCTTATTCTTTTGCATGAATAAAATGTTTGCTATCTGTATGCGGCATCTCTTGAGGAAGTTGAACCTTGGAAACTTGACTTGGCATCTTGCTATCTGCTTGAGGTGTTTATGGGGCTTATATTCACGACTAAGCATATAATACATCTACAAGTTCATGGTCTGGCCTAACATAAAAAGAATAGCCTTGGAATGACAATAAATCTATTTACTTTGAAGTTCTGAAGTTGTTAAATATGCAGATCAAGCGAAGTTTAATAAATTGGCTGCATTGTGCATTCCAAAATCAAAGATATGCTTTATAACTTGTGAAAGAAAGTTAAGCGCCTCGTGCTCACTAATCAATTTTACAGGTAAAATACTTACCAACCGAATATCTTCAAGGAGTGAGTTGGCACCAGCACAAGCATATTATTGCATTCATATCTGGGACGAATCAAGTGTTGTTCGTGACTATGAAAATGCAGGTCATCAAATCTAGTTCAATGTATGATTTGGTTAAAATTTTGTAATCTTTATTTTTGTGTAGATATACAGAAGTAGGTTTATTGTTTTTCTGATATTTTTATTTGTATATAGAACTTGCATTAGTTCATTTCATCTAAAAATTACTTGTTCAATTTCTATCAAATAATGTGGATTTTTTTCACTCTCTGGACAGAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAGCAAGTACCTTAGAGCTGCAATCTTATCATATAAAATAAGCACTATAGATCTTAGAACTTAACAGGATAAAATCATTTCTCACAAGAATGTTTGCTGTACATTAGCGTTATATTTTAACTTGACTTGAAATCCCTGGACTGAATGTTCTTTCAGAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGAGACCTGGTGCCATGTCTTTCTTAGGATCATTCTCAAGAGGCTTCGGGGTTCGATATACGCTAGTTGATTTTCTTCGAAGCCATGATGAACAGATTAGTGCCCTGTCATGGAGTTCGGATGGAAGATATCCAAATCAATTAACAAATTTTAGTCCTTTGCATGATAGTTGAATTGATGGTTGGATGATAGTGCAAACCCCTTTCTCTGTGGAAGAATTCATCAAATGATTTTCTTTGATTATACTTGCTGACAATATTTTACTTGCTATATTTTTATTGTTCTTTTTATGTTGTCTCCTCACCGAAGTATTTCAACCTGATACTAGAGATTTCCTTTAACTCCTTAGCACATATCTCGCATCTGCTACTTATGAGAGCTCTTCTTTTACCATTTGGGATGTGGCTCAAGGTATGTCAAAGGCTAATCTTCTTAGTTATCATTGATAAGTAGATGGTATTTTTTTTAAGAATAGTACTAATGATAGAGAAAATGCTTTCGTTAGTAAGACATATTGATTTTAATTTTTTCAAGTTTCTGCAGATCTGAAAGAGAAACTATCTGCTGCCACAGAAGAGGTTGGTGTCTTATGTGATACGTCAGTCAAACACATATATAACCATACTATAAACATTTGGATTA

mRNA sequence

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Coding sequence (CDS)

ATGAAAATGCAGGTCATCAAATCTAGTTCAATAAGGAAAAGACCCTTGTATTTTGAAACCATGACTTGCAAAGGGATGTTAAAGTTCTTGAGTGGAGACCAAACAGCGGGAGGACTCTGTCTGTTGCATGCAAAGGTGGAATTTGTATATGGGCTGCTTCTTTCCCTGGAAATGATGCTTCCGTGA

Protein sequence

MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMMLP*

Homology

[Close]

BLAST of CsaV3_3G039820 vs. NCBI nr
Match: KGN59563.2 (hypothetical protein Csa_001165 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 7.6e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMML 60
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMML
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHAKVEFVYGLLLSLEMML 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CsaV3_3G039820 vs. ExPASy TrEMBL
Match: A0A0A0LBK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 45
          MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA
Sbjct: 1  MKMQVIKSSSIRKRPLYFETMTCKGMLKFLSGDQTAGGLCLLHA 44

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59563.2	7.6e-25	100.00	hypothetical protein Csa_001165 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBK3	9.1e-16	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816670 PE=4 SV=1	[more]

BLAST of CsaV3_3G039820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039820.1	CsaV3_3G039820.1	mRNA