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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATTTCCCTCTTTCGCCTTTAAACCGCCATCACAGCTCTCACCTGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTGTGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTCTTGGGTTTTCAGTCATAATTGGCAGCCCGGAAGGAAACGGATAGTTTCATCATTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGTGGTGAAATTAAACGCTGGAATTCCGGGTACGTTTTAATTTCTTCACATCTTTAAAGGGATTTCGGGTTCTGCTCTGTTCTTCTTTAGGACAAATAATCGTGGGTACTTTTTCTTAATCGAAAATTTGATCATAATCTTGTTAGTTTTTTATTTGGGGATGTGATTTTATCGATCTAGACTGAAGGGGTTTTGGCGTTTCGTTGCCTTGTTTGACTTTTGATGTAGTGACCGGAAATTTTCAATTTGTAGGCTGGGAAATTTGGCTTTGA mRNA sequence ATGGATTTCCCTCTTTCGCCTTTAAACCGCCATCACAGCTCTCACCTGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTGTGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTCTTGGGTTTTCAGTCATAATTGGCAGCCCGGAAGGAAACGGATAGTTTCATCATTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGTGGTGAAATTAAACGCTGGAATTCCGGGCTGGGAAATTTGGCTTTGA Coding sequence (CDS) ATGGATTTCCCTCTTTCGCCTTTAAACCGCCATCACAGCTCTCACCTGATCCAACGATGGCGATGCCTTCAGGATCAGCCATCCATGTATTGTGGACCCACAGACAACCTTGCCGTTGAAAAAGTTTCGGATTTTTTTTCTTGGGTTTTCAGTCATAATTGGCAGCCCGGAAGGAAACGGATAGTTTCATCATTTTTTCGATACGAAAATCGATTGGAGAGAGACACTGAGATTTTCGTGGTGAAATTAAACGCTGGAATTCCGGGCTGGGAAATTTGGCTTTGA Protein sequence MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKRIVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL*
Homology
BLAST of CsaV3_3G039770 vs. NCBI nr
Match: KGN59400.1 (hypothetical protein Csa_001971 [Cucumis sativus]) HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60
MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR
Sbjct: 1 MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60
Query: 61 IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL 95
IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL
Sbjct: 61 IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL 94
BLAST of CsaV3_3G039770 vs. NCBI nr
Match: KAG7027726.1 (Protein EFR3-like B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08 Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0
Query: 16 LIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKRI 62
+IQ+WRCLQ+QPS++CGPTDNLAVEKV D F +VFS P R+
Sbjct: 1 MIQQWRCLQNQPSLHCGPTDNLAVEKVGDSFLYVFSFRGIPATARL 46
BLAST of CsaV3_3G039770 vs. ExPASy TrEMBL
Match: A0A0A0LBJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816130 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 9.3e-52 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60
MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR
Sbjct: 1 MDFPLSPLNRHHSSHLIQRWRCLQDQPSMYCGPTDNLAVEKVSDFFSWVFSHNWQPGRKR 60
Query: 61 IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL 95
IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL
Sbjct: 61 IVSSFFRYENRLERDTEIFVVKLNAGIPGWEIWL 94
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN59400.1 | 1.9e-51 | 100.00 | hypothetical protein Csa_001971 [Cucumis sativus] | [more] |
| KAG7027726.1 | 2.6e-08 | 63.04 | Protein EFR3-like B, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LBJ9 | 9.3e-52 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816130 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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