|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGTTCGAGTTCCAATCACACCACCACCAGCCACATTCTCAACCAAGTTCTATCTCATAGAGAAAAGGTCCATCAGTTCGTAGTTGCATTGCAATTATGAGCTAGTCCAAAAATTAAACCTCAAGTTACATAATTGTGAAAATTATAAAATCGTAAAAATTTAAAGGTTCAATCAAATTTTTTACTATTTGGGAGTGTTAACAATTTTAACAGGTATAATTACAATTACTACATGTTACAACAATGGCATGAAATAGTTTCATGCTGTAATGAGAAGAATCACAACCATAAAAACACCAAAATACATATTCTATAAGGACTACACAAGGGGATAGTTGCAAATTTAGCAATTAAATTCAAATTAATTAAGTATATAACACAATTTTAAAAAATTTACAAATATAACAAAATTTGTCAAATTCTATCACTGATATACCATATGAAGTCTATCAGCGATACAAGTCTATCAGCGATACAAATCTATCAGTGATAGTTTTGCTATATTTGCAATTTTTTAAAAATGTTGTTATATCCTTAATTATTGTTGCTAAAATAGTCATCCATGACAATTTTCCATTTATTTTCTGTTTTCAGGATAACAAAAGCCCAAGAGTTAAGAAGTGGAAGACATGGAGCAAGGCTTCAGATCACACAAAAAATTGGCAGACTTTACAACAGGGGTGCATGTGGAAATTCTAG mRNA sequence ATGCGTTCGAGTTCCAATCACACCACCACCAGCCACATTCTCAACCAAGTTCTATCTCATAGAGAAAAGGATAACAAAAGCCCAAGAGTTAAGAAGTGGAAGACATGGAGCAAGGCTTCAGATCACACAAAAAATTGGCAGACTTTACAACAGGGGTGCATGTGGAAATTCTAG Coding sequence (CDS) ATGCGTTCGAGTTCCAATCACACCACCACCAGCCACATTCTCAACCAAGTTCTATCTCATAGAGAAAAGGATAACAAAAGCCCAAGAGTTAAGAAGTGGAAGACATGGAGCAAGGCTTCAGATCACACAAAAAATTGGCAGACTTTACAACAGGGGTGCATGTGGAAATTCTAG Protein sequence MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF*
Homology
BLAST of CsaV3_3G039650 vs. NCBI nr
Match: KGN59388.1 (hypothetical protein Csa_002454 [Cucumis sativus]) HSP 1 Score: 122.9 bits (307), Expect = 9.3e-25 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF 58
MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF
Sbjct: 1 MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF 57
BLAST of CsaV3_3G039650 vs. ExPASy TrEMBL
Match: A0A0A0LC49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816010 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25 Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF 58
MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF
Sbjct: 1 MRSSSNHTTTSHILNQVLSHREKDNKSPRVKKWKTWSKASDHTKNWQTLQQGCMWKF 57
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN59388.1 | 9.3e-25 | 100.00 | hypothetical protein Csa_002454 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LC49 | 4.5e-25 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G816010 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 17..37 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..37 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
