CsaV3_3G039490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	acanthoscurrin-2-like
Location	chr3: 32475513 .. 32476828 (+)
RNA-Seq Expression	CsaV3_3G039490
Synteny	CsaV3_3G039490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTAAAAGTATACGAGCGAATAAAAGATTTTAAAAGTACACAAACAAATGAACCAAAATGGAAAGTAAACATACTAAAGTAGTATATATAATATAAACCTACTGCTAATGAATTCAATACTAAATCGAATATGAAGAGTACTATAGGTAAAAAGAACACTAAAAAAATCTGGAAAGAAAGCTTACACGTCTAAGATTGAGATATTTCAAAGGGATATTGTGAATATGTTAAAGAAGATCACTAGATTTCATAAAGGGAACAAGAATGACAACAACCAAATCACAACTTATGAGAGAGAGTTAAGACATTCATGAGGTTCATGTTACTCAAAACCTAAATTGATCACAATGGATCCTATGCCATAGCATTAACTAAAGTTTGCTACCCCTATTCAATTTCCCCTCAACAGTCCACCGTCTTCTATTCCCTTTAAAAAGACTCACAAATTTGATATCCTTTCACCACACACAAAAATTAAACAGCCCTTCAAATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAAACTATTAATCTAAGAGTGGAGGATTCGTTTACAAAGTTTGGTGTGTTTCTTATGTGTGTTTTATTGTAATGTTTTAATTTGGAGTTTCTTTAGGGTTTATATAAGAAAAAGATAAGTAATTTGTGTGTTTGGTTTGCAATGTTAGTTTGATCACTACATCTTGTTGATGTAAGTTTGATGACAATTGCTCTTGTTTCTTTTAAATGTCTAATTGAAAATGGTGGATGGCTACCTTTACTCATAAAGGGAAATGCATATGTGTGTGTGGGTTTATGTTAGAATGATGTTGAGTTAAAGGAAAGAAAAGATAAAGATTGGGCCTCGTTTTGGCATCAAGAAAGTAGCACACGTACTACTAGCAACTAATCTTAAATGATGTTAATTGATCAAAATCAAAATGATTTTATGTATTTAATTTTGTTTATAATAACATCTTATTTCAAATATATGTGATTTTCTC

mRNA sequence

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Coding sequence (CDS)

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Protein sequence

MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP*

Homology

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BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.8e-44
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

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BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-like [Cucumis melo var. makuwa] >TYJ97692.1 acanthoscurrin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 8.4e-36
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLV  MAMAA A HV ART PN +AAKGLNDQKNFLNYGGVGGFSGIGD GL
Sbjct: 1   MANYKLNLMLV--MAMAALALHVAARTAPN-EAAKGLNDQKNFLNYGGVGGFSGIGDGGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_038887967.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 5.3e-30
Identity = 103/122 (84.43%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLV  MAMAAFA HV ART PN +A KGLNDQKNFLNYGG+GG  GIGDSGL
Sbjct: 1   MANYKLNLMLV--MAMAAFAVHVAARTAPN-EAGKGLNDQKNFLNYGGIGGIGGIGDSGL 60

Query: 61  PF--GGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVK 120
           PF  GGGIGGGGLGGGGGLGGLGGGIGG GGVGIGGIGGG+GGGV   IGGIGGGGG VK
Sbjct: 61  PFGGGGGIGGGGLGGGGGLGGLGGGIGGVGGVGIGGIGGGIGGGV---IGGIGGGGGFVK 116

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BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_023511522.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 86/120 (71.67%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MAN KLNLML+MAMAMAAFA HV ART P  +AAKGLNDQKNFL+    GGFSGIGDSGL
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAP-IEAAKGLNDQKNFLS----GGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PF      GGLGGGGGLGGLGGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  PF------GGLGGGGGLGGLGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

[Close]

BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_022963787.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 7.2e-19
Identity = 85/120 (70.83%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MAN KLNLML+MAMAMAAFA HV ART P  +AAKGLNDQKNFL     GGFSGIGDSGL
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAP-IEAAKGLNDQKNFLG----GGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PF      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  PF------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

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BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

[Close]

BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.1e-36
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLV  MAMAA A HV ART PN +AAKGLNDQKNFLNYGGVGGFSGIGD GL
Sbjct: 1   MANYKLNLMLV--MAMAALALHVAARTAPN-EAAKGLNDQKNFLNYGGVGGFSGIGDGGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.1e-36
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLV  MAMAA A HV ART PN +AAKGLNDQKNFLNYGGVGGFSGIGD GL
Sbjct: 1   MANYKLNLMLV--MAMAALALHVAARTAPN-EAAKGLNDQKNFLNYGGVGGFSGIGDGGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL
Match: A0A6J1HG59 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.5e-19
Identity = 85/120 (70.83%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MAN KLNLML+MAMAMAAFA HV ART P  +AAKGLNDQKNFL     GGFSGIGDSGL
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAP-IEAAKGLNDQKNFLG----GGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PF      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVG          G GGG VK+P
Sbjct: 61  PF------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVG----------GVGGGFVKIP 98

[Close]

BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL
Match: A0A6J1DV95 (acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-18
Identity = 83/123 (67.48%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 9   MLVMAMAMAAFAFHVTARTVP---NDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG- 68
           ML++ +AMAAFA   +AR  P   +D A +GL DQKN LNYGG+GGFSGIGD+GLP GG 
Sbjct: 8   MLMLVVAMAAFAVQASARAAPTDHHDPAGEGLKDQKNLLNYGGLGGFSGIGDNGLPVGGI 67

Query: 69  ----GIGG--GGLGGG-GGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLV 121
               G+GG  GGLGGG GGLGGLGGGIGG+GG GIGGIG G+GGG +GGIGGIGGGGG V
Sbjct: 68  GGVVGLGGGLGGLGGGAGGLGGLGGGIGGYGGGGIGGIGVGIGGGALGGIGGIGGGGGFV 127

[Close]

BLAST of CsaV3_3G039490 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MA +   + LV A+A    A    AR VP      GL+DQKN+L YG  GG+SG+GD+GL
Sbjct: 1   MAKWFFTIFLVFALAS---ALACGARNVP-----VGLSDQKNYLGYG--GGYSGVGDNGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGI-GGIGGGGGL 117
           PF GG+GGG  G GG L     G GGFGG G GG+GGG+GGG   G+ GG+GGG G+
Sbjct: 61  PF-GGVGGGVSGPGGNL-----GYGGFGGAG-GGLGGGLGGGAGSGLGGGLGGGSGI 100

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652144.1	3.8e-44	100.00	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]
XP_008447334.1	8.4e-36	90.83	PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-l...	[more]
XP_038887967.1	5.3e-30	84.43	acanthoscurrin-1-like [Benincasa hispida]	[more]
XP_023511522.1	3.2e-19	71.67	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963787.1	7.2e-19	70.83	glycine-rich protein 5-like [Cucurbita moschata]	[more]

BLAST of CsaV3_3G039490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEM4	1.8e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	4.1e-36	90.83	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	4.1e-36	90.83	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]
A0A6J1HG59	3.5e-19	70.83	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 S...	[more]
A0A6J1DV95	1.3e-18	67.48	acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1	[more]

BLAST of CsaV3_3G039490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	2.2e-05	52.14	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 8..115
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 8..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039490.1	CsaV3_3G039490.1	mRNA