CsaV3_3G039450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ribosome production factor 1-like
Location	chr3: 32458118 .. 32460902 (-)
RNA-Seq Expression	CsaV3_3G039450
Synteny	CsaV3_3G039450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGGAGAAGAAGAACAAGGTTATAGTCCCATCAACGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCGAACCTCAAGCATCAGAAGAAGCTAGAGAAACGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAAGTATATCCATCAACTCCAGCATCTACTCTGTTTGTTTGTCTTCTATCTCTGAGATTCTGACTTCATATTTTTTTTTTTCCGTAGCTTCCTCCTAGAAAGATTCCTCGCACCATTGAGAACACTAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGACGAAGAGGTTCTTCTTTTTAAATCTCAATATATGACATGTTTTAGCTTTTGTTTATTTGTAATTCTTGTTATTAGAGTTCACAATTTTAATAAGGCTAGTTTTTTATCCTCTGCAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCTATCATAAAGCGCGACATTTTGCCAAAAATTCTAATTACTACTTGTCGTTTTAATTCTACGGTAAGATTTCTCAATTTATTTTTTGAGCAACATTTGCTAAATGGAGACTAACCTAAAATGTTCGGAGTTGATTAGACTTAGTACCTTATACTTATGTGACTTACTGTTTGCAGATTGGTCCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGGACTAACGATTTGAAGAAGGTTATGCTCATAAGTCATATTTATATTTTCTAATGAATATGAAGAAGGAAAAGTAAATTAGAAAATAAAGAAGTTTATACTAATATGTATAGAATACCAAATCTTCTCTTGCTTGCAGATTGTAGAATATGCAAATGCCAAAGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGGTAAGTTGATAGCCCTTCAGAAACCTTCCAGTTCTTTCTTGCATGTTAATTCGTCTCTTTCAAACTTGTTCTCTCTTTTTCTAGTTTTCTTTCTTTAGCTATATAGTTTAGATTCTTTTCTCAATCTACTGCAATGTTTTGAAATTCTAGATGGACTTTTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTCAAGATTTCAAATGTCGTCTTACGTAAGGAAATTAAGGTATACTGGTTCATATCAATAAAATAACCTCTGAACCGTTGTATTGCATTTTAACTACTACTGGGTTTTTGGAGGATTTTTTTCCCAAGAAACCGTAAACATTTAGTCTTTTCTTGCTTTGTAGAATCATGGAAATCCAACGGGTCATCAGCCAGAACTTGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGGTTACTTTCTGTACCTTAATTTCTTTATCTGCAAATACTGTCTTGTGATGTCCGCATTTAATTTTTAGGTGTTCTTGTTTCTTTTTTTATGTTTCTGTAATTATGATATCTCAAGTTTTTCTCAATGCATTGACTTTTGTTGTTGTGTTGTTTCTTTAGATTAATACAATCATTATTCCCTCAAGATCCCAATTTTCGCGGTCGGCGGGTTGTAACTTTTCATAACCAACGAGATTTTATATTTTTTCGGCATCACAGGTATGCTGCTTTATATATATATTTTTCTGTATTTAGGTGAGTTGGACTATGACTAATTTGTGTTTTTACCTTCTCAGATACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCTGACTCAAAAAAGAAGTCCAAGGGTACCAAGGGTGAGAAAGTTCCTCAGCAGAAAGTGATTGCTCGTCTTCAGGTCGATATTAACCTACTACTCATAAAACGTTGTTTTATGATATCTATAGTGGTTTATTTTGCAACTTGGAGACTTCAATATTGTTTACTTGTTTTCATCTTGTCTCTCTTTCTGCAACTCAGTTTTTTTTCTTCCTCTAATTTTTTTGGGGGTGATGATTAACATCAATTCATTTATAATCAAGGAACCATGACAGAGGGACTCTGGAAATTTAGAACGTTTCGTGGGTATTTCTCGGTTTTGTGAGAAATAGTCTATGGAACCCAAAAATTTCTTATTGTAGCATACTCCTGTTTTATACTGTCATTAACTCTCACACATCAATATTAGTATTTTATATCGGCTTTTGTTTCTTCAATCAATCTGGAAACTAACCAACGAGTGTGTGGAGTAAAATTGACTTGTATCAGAACACACCCAAGTTTTATTATGTTATCCTCGGAGATTATGTACTGCCATTTTTTCCAGATTGTCATGTCTTGTATCCCTTTGAATTTAGTCTTCCTTCTCCTTCGACAAAATAAAGAAGTTGCAGCTCATTCAAGAGGGTTGGCGAGGACCATGTCATCACTTAGTGTCCAAAACTTCCATGTTATTCTTTATGCCAATTTTTGTTCCTTTTTTTTTATTTGATTTGAATGAAAGTGATATTAGTATGCTCTAAAATATGAGAAATAGTTAGAGAAAAAATGGCTAAATAATGATAGAAGGAATGTTAGTGTAGACAACTGATTCTGAGATTTGATTTTTAGGAATGTGGTCCTCGGTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAATGGGTTCATAAGGTAAGTCAAGTCTATCTCTATCAGATGTGCATGTAATGGACACTAATAGATTATTATCTATGCTGCTTATCTAATGTTTTTTTACTTCTTTGAATTCTAGCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGA

mRNA sequence

ATGGGGGAGGAGAAGAAGAACAAGGTTATAGTCCCATCAACGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCGAACCTCAAGCATCAGAAGAAGCTAGAGAAACGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACTTCCTCCTAGAAAGATTCCTCGCACCATTGAGAACACTAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGACGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCTATCATAAAGCGCGACATTTTGCCAAAAATTCTAATTACTACTTGTCGTTTTAATTCTACGATTGGTCCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGGACTAACGATTTGAAGAAGATTGTAGAATATGCAAATGCCAAAGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGATGGACTTTTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTCAAGATTTCAAATGTCGTCTTACGTAAGGAAATTAAGAATCATGGAAATCCAACGGGTCATCAGCCAGAACTTGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAATCATTATTCCCTCAAGATCCCAATTTTCGCGGTCGGCGGGTTGTAACTTTTCATAACCAACGAGATTTTATATTTTTTCGGCATCACAGATACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCTGACTCAAAAAAGAAGTCCAAGGGTACCAAGGGTGAGAAAGTTCCTCAGCAGAAAGTGATTGCTCGTCTTCAGGAATGTGGTCCTCGGTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAATGGGTTCATAAGCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGA

Coding sequence (CDS)

ATGGGGGAGGAGAAGAAGAACAAGGTTATAGTCCCATCAACGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCGAACCTCAAGCATCAGAAGAAGCTAGAGAAACGCAAGAGGGCTAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACTTCCTCCTAGAAAGATTCCTCGCACCATTGAGAACACTAGGGAGGTTGATGAGACTGTTTGCAAACCTGATGACGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCTATCATAAAGCGCGACATTTTGCCAAAAATTCTAATTACTACTTGTCGTTTTAATTCTACGATTGGTCCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGGACTAACGATTTGAAGAAGATTGTAGAATATGCAAATGCCAAAGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGATGGACTTTTAATTATTGGCTTACCTGAGGGACCTACTGCCCATTTCAAGATTTCAAATGTCGTCTTACGTAAGGAAATTAAGAATCATGGAAATCCAACGGGTCATCAGCCAGAACTTGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAATCATTATTCCCTCAAGATCCCAATTTTCGCGGTCGGCGGGTTGTAACTTTTCATAACCAACGAGATTTTATATTTTTTCGGCATCACAGATACATTTTTGAAAGCAAGGAAAATAAAAAAGAGGCTGACTCAAAAAAGAAGTCCAAGGGTACCAAGGGTGAGAAAGTTCCTCAGCAGAAAGTGATTGCTCGTCTTCAGGAATGTGGTCCTCGGTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGGGAATATGAATGGGTTCATAAGCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGA

Protein sequence

MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL*

Homology

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BLAST of CsaV3_3G039450 vs. NCBI nr
Match: XP_031737500.1 (ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein Csa_002461 [Cucumis sativus])

HSP 1 Score: 656.4 bits (1692), Expect = 1.3e-184
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

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BLAST of CsaV3_3G039450 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 646.4 bits (1666), Expect = 1.4e-181
Identity = 325/332 (97.89%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEEKKNK I+PS IKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSK TKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

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BLAST of CsaV3_3G039450 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 632.5 bits (1630), Expect = 2.1e-177
Identity = 316/332 (95.18%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEE KN+ I+PS IKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEENKNRGIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR+ILPK+LITTCRFNSTIGP F
Sbjct: 61  KIPRTIENTREVDETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPTF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPT HQPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRIGRLIQALFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSK TKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

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BLAST of CsaV3_3G039450 vs. NCBI nr
Match: XP_022156150.1 (ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 612.8 bits (1579), Expect = 1.7e-171
Identity = 310/333 (93.09%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MGEEKKNK-VIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  I+PS IKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPK+LITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300
           TFHNQRDFIFFRHHRYIF+SKENKKEADSK  SK  KGEKVP+QKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of CsaV3_3G039450 vs. NCBI nr
Match: XP_022155906.1 (ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 612.5 bits (1578), Expect = 2.2e-171
Identity = 309/333 (92.79%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MGEEKKNK-VIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  I+PS IKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPK+LITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300
           TFHNQRDF+FFRHHRYIF+SKENKKEADSK  SK  KGEKVPQQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

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BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.9e-73
Identity = 156/326 (47.85%), Postives = 204/326 (62.58%), Query Frame = 0


Query: 13  STIKNKEKRAEVHANLKHQKKLEK----RKRAKARDAAEKQALELGEELPPRKIPRTIEN 72
           S IKNK++R  +   LK +K+ EK    +KR K R+A       LG++ PP+ +P+TIEN
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKRKKEREA-------LGDKAPPKPVPKTIEN 108

Query: 73  TREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVI 132
            R  DET   P DEE+      DEF+    +   PKILITT          F  +L S+I
Sbjct: 109 QRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSII 168

Query: 133 PNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVV 192
           PN+  Y R    LKKI+    ++D+T L+V++  R+  +GL++  LP+GPTAHFKISNV 
Sbjct: 169 PNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVR 228

Query: 193 LRKEIKNHG-NPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDF 252
           LRKE+K  G  PT H+PE++L NFTTRLG  +GR+  SL+P DP+F GR+V TFHNQRD+
Sbjct: 229 LRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDY 288

Query: 253 IFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGT 312
           IFFR+HRY+F+S++                           +QE GPRFT+KL SLQ GT
Sbjct: 289 IFFRYHRYLFKSEKK------------------------VGIQELGPRFTLKLRSLQKGT 343

Query: 313 FDSKGGEYEWVHK-PEMDTSRRRFFL 333
           FDSK GEYEWVHK  EMDTSRR+F L
Sbjct: 349 FDSKYGEYEWVHKRHEMDTSRRKFHL 343

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BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot
Match: Q5R631 (Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-72
Identity = 154/322 (47.83%), Postives = 201/322 (62.42%), Query Frame = 0


Query: 13  STIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNKE+R   H      K+ +++++  A+   +K+   LG++ PP+ +P+TI+N R  
Sbjct: 55  SEIKNKERR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   +   PKILITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKE 192
            Y R    LKKI+    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRKE
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF S++                           +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFRSEKK------------------------VGIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot
Match: Q9H9Y2 (Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2)

HSP 1 Score: 273.9 bits (699), Expect = 2.5e-72
Identity = 153/322 (47.52%), Postives = 201/322 (62.42%), Query Frame = 0


Query: 13  STIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+ +P+TI+N R  
Sbjct: 55  SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   +   PKILITT             +L +VIPN+H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSH 174

Query: 133 YYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKE 192
            Y R    LKKI+    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRKE
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF S++                           +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFRSEKK------------------------VGIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot
Match: Q7TND5 (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 273.9 bits (699), Expect = 2.5e-72
Identity = 153/322 (47.52%), Postives = 202/322 (62.73%), Query Frame = 0


Query: 13  STIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNK++R   H      K+ +++++  A+   +K+   LG++ PP+ +P+TI+N R  
Sbjct: 55  SEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVY 114

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+DEE+      DEF+S   R   PKILITT             +L +VIP++H
Sbjct: 115 DETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSH 174

Query: 133 YYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKE 192
            Y R    LKKI+    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRKE
Sbjct: 175 VYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKE 234

Query: 193 IKNHG-NPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+V TFHNQRD+IFFR
Sbjct: 235 IKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFR 294

Query: 253 HHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF+S++                           +QE GPRFT+KL SLQ GTFDSK
Sbjct: 295 FHRYIFKSEKK------------------------VGIQELGPRFTLKLRSLQKGTFDSK 349

Query: 313 GGEYEWVHKP-EMDTSRRRFFL 333
            GEYEWVHKP EMDTSRR+F L
Sbjct: 355 YGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot
Match: Q6IQU6 (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.7e-71
Identity = 156/322 (48.45%), Postives = 204/322 (63.35%), Query Frame = 0


Query: 13  STIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP+++P+TIEN R  
Sbjct: 36  SEIKNKQRRHTMFLKLKEEKR-KKRMELKKKKKKERKALD--DKAPPKEVPKTIENQRIY 95

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+DEE+      DEFS+   R   PK+LITT          F  +L +VIP+A+
Sbjct: 96  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 155

Query: 133 YYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKE 192
            Y R    LKK++    ++ FT LMV++  R+  +G+++  LP+GPTAHFK+S+V LRKE
Sbjct: 156 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 215

Query: 193 IKNHG-NPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTFHNQRDFIFFR 252
           +K  G NPT H PE++L NFTTRLG  +GRL  +LFP DP F GR+V TFHNQRDFIFFR
Sbjct: 216 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 275

Query: 253 HHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF  K  KK                        +QE GPRFT+KL SLQ GTFDSK
Sbjct: 276 FHRYIF--KNEKK----------------------VGIQELGPRFTLKLRSLQKGTFDSK 330

Query: 313 GGEYEWVHK-PEMDTSRRRFFL 333
            GEYEWVHK  EMD+SRR+F L
Sbjct: 336 FGEYEWVHKRHEMDSSRRKFHL 330

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 6.5e-185
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 6.7e-182
Identity = 325/332 (97.89%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEEKKNK I+PS IKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSK TKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 6.7e-182
Identity = 325/332 (97.89%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60
           MGEEKKNK I+PS IKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240
           HFKISNVVLRK+IKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKEADSKKKSK TKGEKVPQQKVIARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 8.2e-172
Identity = 310/333 (93.09%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MGEEKKNK-VIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  I+PS IKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPK+LITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300
           TFHNQRDFIFFRHHRYIF+SKENKKEADSK  SK  KGEKVP+QKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL
Match: A0A6J1DT48 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.1e-171
Identity = 309/333 (92.79%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MGEEKKNK-VIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  I+PS IKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPK+LITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180
           FISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240
           AHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMK 300
           TFHNQRDF+FFRHHRYIF+SKENKKEADSK  SK  KGEKVPQQKVIARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of CsaV3_3G039450 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 490.3 bits (1261), Expect = 1.2e-138
Identity = 244/331 (73.72%), Postives = 283/331 (85.50%), Query Frame = 0


Query: 2   GEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPRK 61
           G EK+N VI+PS IKNK+KR++V+A  KH+KKLEK+K+ +ARDAAEK+ALELGEE P + 
Sbjct: 27  GGEKRN-VILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKM 86

Query: 62  IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAFI 121
           IP+TIENTRE DETVC+PDDEELFA  DADEF+ +++R+I PK+L+TTCRFNST GPA I
Sbjct: 87  IPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALI 146

Query: 122 SELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAH 181
           SELLSVIPN+HY KRGT DLKKIVEYA  KDFTSL+VVHT+RR+ D LLIIGLP GPTAH
Sbjct: 147 SELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAH 206

Query: 182 FKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVTF 241
           FK+SN+VLRK+IKNHGNPT HQPELVL NFTTRLG RVGR  QSLFP DPNFRGRRVVTF
Sbjct: 207 FKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTF 266

Query: 242 HNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKLI 301
           HNQRDFIFFRHHRYIFE+KE             +K +K  ++ +  RLQECGPRFT+KL+
Sbjct: 267 HNQRDFIFFRHHRYIFETKE-------------SKSDKGKEETIKPRLQECGPRFTLKLV 326

Query: 302 SLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           +LQHGTFD+KGGE+EWVHKPEMDTSRRRFFL
Sbjct: 327 TLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343

[Close]

BLAST of CsaV3_3G039450 vs. TAIR 10
Match: AT1G63780.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-38
Identity = 100/288 (34.72%), Postives = 154/288 (53.47%), Query Frame = 0


Query: 48  KQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILI 107
           ++AL+ G+ +P        +  +E+D    +  +  +   +  DE+++  + D  PKIL+
Sbjct: 33  REALQEGKPIPTELRNVEAKLRQEID---LEDQNTAVPRSHIDDEYANATEAD--PKILL 92

Query: 108 TTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLD 167
           TT R  S     F  EL  V PN+    RG+  + +I+E A + DFT +++VH  R   D
Sbjct: 93  TTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARSHDFTDVILVHEHRGVPD 152

Query: 168 GLLIIGLPEGPTAHFKISNVVLRKEI---KNHGNPTGHQPELVLTNFTTRLGLRVGRLIQ 227
           GL+I  LP GPTA+F + NVV R +I   K+ G      P L+  NFTT++G RVG +++
Sbjct: 153 GLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLIFNNFTTQMGQRVGNILK 212

Query: 228 SLFPQDPNFRGRRVVTFHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQK 287
            +FP  P    +R+VTF NQ D+I FR+H Y                    KGE  P+  
Sbjct: 213 HIFPA-PKLDAKRIVTFSNQSDYISFRNHVY-------------------DKGEGGPKS- 272

Query: 288 VIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
               L+E GPRF ++L  ++ GT +    E EWV +P M+TS++R F+
Sbjct: 273 --IELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737500.1	1.3e-184	100.00	ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein ...	[more]
XP_008443155.1	1.4e-181	97.89	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_038906205.1	2.1e-177	95.18	ribosome production factor 1 [Benincasa hispida]	[more]
XP_022156150.1	1.7e-171	93.09	ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome...	[more]
XP_022155906.1	2.2e-171	92.79	ribosome production factor 1-like [Momordica charantia]	[more]

BLAST of CsaV3_3G039450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8AVP1	2.9e-73	47.85	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
Q5R631	1.1e-72	47.83	Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1	[more]
Q9H9Y2	2.5e-72	47.52	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2	[more]
Q7TND5	2.5e-72	47.52	Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2	[more]
Q6IQU6	2.7e-71	48.45	Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1	[more]

BLAST of CsaV3_3G039450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH42	6.5e-185	100.00	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]
A0A1S3B854	6.7e-182	97.89	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	6.7e-182	97.89	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1DPH5	8.2e-172	93.09	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106...	[more]
A0A6J1DT48	1.1e-171	92.79	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909...	[more]

BLAST of CsaV3_3G039450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	1.2e-138	73.72	Ribosomal RNA processing Brix domain protein	[more]
AT1G63780.1	5.3e-38	34.72	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 106..303 e-value: 1.3E-57 score: 207.4
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 119..301 e-value: 2.1E-33 score: 116.1
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 103..309 score: 41.354671
None	No IPR available	GENE3D	3.40.50.10480		coord: 103..299 e-value: 5.1E-37 score: 129.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..278
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 1..332
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 103..306
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 1..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039450.1	CsaV3_3G039450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0042134	rRNA primary transcript binding