|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA mRNA sequence ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA Coding sequence (CDS) ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA Protein sequence MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEKSGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIFLFVFVMMREKGNGEDEDRRERNWAFI*
Homology
BLAST of CsaV3_3G039370 vs. NCBI nr
Match: KGN59358.1 (hypothetical protein Csa_001260 [Cucumis sativus]) HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK
Sbjct: 1 MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
Query: 61 SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF
Sbjct: 61 SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
Query: 121 LFVFVMMREKGNGEDEDRRERNWAFI 147
LFVFVMMREKGNGEDEDRRERNWAFI
Sbjct: 121 LFVFVMMREKGNGEDEDRRERNWAFI 146
BLAST of CsaV3_3G039370 vs. ExPASy TrEMBL
Match: A0A0A0LC09 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1) HSP 1 Score: 298.5 bits (763), Expect = 1.5e-77 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK
Sbjct: 1 MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
Query: 61 SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF
Sbjct: 61 SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
Query: 121 LFVFVMMREKGNGEDEDRRERNWAFI 147
LFVFVMMREKGNGEDEDRRERNWAFI
Sbjct: 121 LFVFVMMREKGNGEDEDRRERNWAFI 146
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN59358.1 | 3.1e-77 | 100.00 | hypothetical protein Csa_001260 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LC09 | 1.5e-77 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..92 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 71..87 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 16..41 |
Relationships
The following mRNA feature(s) are a part of this gene:
|
