CsaV3_3G039360 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039360
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr3: 32350270 .. 32351116 (+)
RNA-Seq Expression	CsaV3_3G039360
Synteny	CsaV3_3G039360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGGTAACGTTCGATGATGTGTAAGTTTGTTGTAGGTTAATAAATTTTAAAAAGCATCACTTACGTTTATGAACTAATTTTTTGTCTAATAAGAGTTAACACTGATACAGCATCTTAATTAGATTAGTAAGTGATGGGTTTACATGAACAAGAGAATAGGCCTACTGAAGAAAATGAAGGAAGACAGTAAAAAAAAAATTAGTGACCAAGTAGGCTAAATCCATTCTAAATAATGTAAATCAACTTTGCAACCATAAGAGAACTCTAATTACACGTTTCTTCTTTTACAAGTTCATCTTCTCAGCGTCAGTTCTGGTTCTTGTTTGGTACAAGTTCTGGGTTTTGACAGTTATGCACATATTAAGATAAATCTTATTTTCTTGCTTTTGTCAATTATTTTCAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

mRNA sequence

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

Coding sequence (CDS)

ATGGAATTGTTTAGGGAGATGCAGAAGGCTGGGATTCAACCGGATGCGATGACTCTAGTGAGTGTCGTTTCGGCTTGTGCTGTGGCGGGGGCCTTGGATATTGGCTACTGGTTGCATGCTTACATTGAGAAATATTTTGTTTTGACTGATCTCGAGCTTAGCACTGCACTTGTGGATATGTATGCTAAATGTGGATGTATTGAGAGGGCAAAGCAGGTTTTTGTTCATATGCCTGTGAAAGATACTACAGCTTGGAGCTCCATGATTATGGGCTTTGCATATCATGGACTTGCACAGGATGCTATAGACGCGTTTCAACAAATGTTGGAAACTGAGTGGTGGTTTTCAGGTGACGCCGGACCATGTGACTTTCCTCGCTGTTCTATCAGCATGTGCTCACGGTGGACTTGTCTCTCGAGGTCGAAGATTTTGGTCACTCATGCTTGA

Protein sequence

MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAGPCDFPRCSISMCSRWTCLSRSKILVTHA*

Homology

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BLAST of CsaV3_3G039360 vs. NCBI nr
Match: KAE8651153.1 (hypothetical protein Csa_001288 [Cucumis sativus])

HSP 1 Score: 311.2 bits (796), Expect = 4.7e-81
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM
Sbjct: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAG 120
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAG
Sbjct: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAG 120

Query: 121 PCDFPRCSISMCSRWTCLSRSKILVTHA 149
           PCDFPRCSISMCSRWTCLSRSKILVTHA
Sbjct: 121 PCDFPRCSISMCSRWTCLSRSKILVTHA 148

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BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_031737591.1 (pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-56
Identity = 114/120 (95.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM
Sbjct: 225 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 284

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEWWFSGDAG 120
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE  F    G
Sbjct: 285 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTFDDVGG 344

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: KAA0043682.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25449.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 178 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 237

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 289

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_008443148.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like, partial [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 199 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 258

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 259 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 310

[Close]

BLAST of CsaV3_3G039360 vs. NCBI nr
Match: XP_038904476.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like, partial [Benincasa hispida])

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-49
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGI+PD MTLVSVVSACAVAG LDIG WLH YI+KYFV TDL LSTALVDM
Sbjct: 225 MELFREMQKAGIEPDEMTLVSVVSACAVAGTLDIGCWLHTYIKKYFVFTDLVLSTALVDM 284

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVF+ MPVKDTTAWSSMIMGFAYHGL++DAI+AFQQMLETE
Sbjct: 285 YAKCGCIERAKQVFLQMPVKDTTAWSSMIMGFAYHGLSEDAINAFQQMLETE 336

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot
Match: Q9C866 (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-25
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +ELFR MQ AGI+PD   LVS+++ CA  GAL+ G W+H YI +  V  D  + TALVDM
Sbjct: 264 LELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDM 323

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           YAKCGCIE A +VF  +  +DT +W+S+I G A +G++  A+D + +M
Sbjct: 324 YAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEM 371

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BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M+ FREMQ AGI+PD ++L+SV+ +CA  G+L++G W+H Y E+   L    +  AL++M
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEM 285

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y+KCG I +A Q+F  M  KD  +WS+MI G+AYHG A  AI+ F +M
Sbjct: 286 YSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +E+FREMQ AG+ PD  T+VSV++ACA  G+L+IG W+  YI+K  +  D+ +  AL+DM
Sbjct: 353 LEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDM 412

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y KCGC E+A++VF  M  +D   W++M++G A +G  Q+AI  F QM
Sbjct: 413 YFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-23
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +E+FREM+K  I+P+ +TLVSV+ A +  G+L++G WLH Y E   +  D  L +AL+DM
Sbjct: 259 VEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDM 318

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y+KCG IE+A  VF  +P ++   WS+MI GFA HG A DAID F +M
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKM 366

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot
Match: Q8LK93 (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-23
Identity = 48/108 (44.44%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           + LFREMQ   ++P+ +TL+SV+S+CA+ G+LD+G W+H Y +K+     ++++TAL+DM
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           +AKCG ++ A  +F  M  KDT AWS+MI+ +A HG A+ ++  F++M
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERM 322

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL
Match: A0A0A0LF80 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812780 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.8e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTALVDM
Sbjct: 178 MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDM 237

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL
Match: A0A5D3DQ32 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005950 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 178 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 237

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 238 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 289

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL
Match: A0A1S3B831 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486823 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+QPDAMTLVSVVSACAVAGALDIG WLHAYIEKYFVLTDLELSTAL+DM
Sbjct: 199 MGLFREMQKAGVQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALLDM 258

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPVKDTTAWSSMIMG AYHGL +DA+DAFQQMLETE
Sbjct: 259 YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGLAYHGLVEDAVDAFQQMLETE 310

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL
Match: A0A6J1F295 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita moschata OX=3662 GN=LOC111441735 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG++PDA+TLVSVVSACA AGALDIG W+HAYIEK+ VLTDLEL TALVDM
Sbjct: 227 MGLFREMQKAGVEPDAVTLVSVVSACAAAGALDIGSWVHAYIEKHSVLTDLELGTALVDM 286

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVFVHMPV+DT AWSSMIMGFAYHGL++DAI  F+QMLE E
Sbjct: 287 YAKCGCIERAKQVFVHMPVRDTRAWSSMIMGFAYHGLSEDAIGVFRQMLEAE 338

[Close]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL
Match: A0A6J1DL35 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111021527 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.1e-46
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M LFREMQKAG+ PDA+TLVSVVSACAVAGALDIG WLHAYIEKYFV TDLEL TAL+DM
Sbjct: 217 MGLFREMQKAGVGPDAVTLVSVVSACAVAGALDIGCWLHAYIEKYFVSTDLELETALLDM 276

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 113
           YAKCGCIERAKQVF  MPVKDT AWSSMIMGFA HGL++DAIDAFQQMLE +
Sbjct: 277 YAKCGCIERAKQVFDSMPVKDTRAWSSMIMGFACHGLSEDAIDAFQQMLEAK 328

[Close]

BLAST of CsaV3_3G039360 vs. TAIR 10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-26
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +ELFR MQ AGI+PD   LVS+++ CA  GAL+ G W+H YI +  V  D  + TALVDM
Sbjct: 264 LELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDM 323

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           YAKCGCIE A +VF  +  +DT +W+S+I G A +G++  A+D + +M
Sbjct: 324 YAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEM 371

[Close]

BLAST of CsaV3_3G039360 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           M+ FREMQ AGI+PD ++L+SV+ +CA  G+L++G W+H Y E+   L    +  AL++M
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEM 285

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y+KCG I +A Q+F  M  KD  +WS+MI G+AYHG A  AI+ F +M
Sbjct: 286 YSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333

[Close]

BLAST of CsaV3_3G039360 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-25
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +E+FREMQ AG+ PD  T+VSV++ACA  G+L+IG W+  YI+K  +  D+ +  AL+DM
Sbjct: 353 LEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDM 412

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y KCGC E+A++VF  M  +D   W++M++G A +G  Q+AI  F QM
Sbjct: 413 YFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQM 460

[Close]

BLAST of CsaV3_3G039360 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-24
Identity = 54/108 (50.00%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           +E+FREM+K  I+P+ +TLVSV+ A +  G+L++G WLH Y E   +  D  L +AL+DM
Sbjct: 259 VEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDM 318

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           Y+KCG IE+A  VF  +P ++   WS+MI GFA HG A DAID F +M
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKM 366

[Close]

BLAST of CsaV3_3G039360 vs. TAIR 10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 48/108 (44.44%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 1   MELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDM 60
           + LFREMQ   ++P+ +TL+SV+S+CA+ G+LD+G W+H Y +K+     ++++TAL+DM
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 61  YAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQM 109
           +AKCG ++ A  +F  M  KDT AWS+MI+ +A HG A+ ++  F++M
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERM 322

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039360 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651153.1	4.7e-81	100.00	hypothetical protein Csa_001288 [Cucumis sativus]	[more]
XP_031737591.1	2.4e-56	95.00	pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus]	[more]
KAA0043682.1	4.6e-52	92.86	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25449...	[more]
XP_008443148.2	4.6e-52	92.86	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/...	[more]
XP_038904476.1	8.2e-49	88.39	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

BLAST of CsaV3_3G039360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C866	8.5e-25	50.00	Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX...	[more]
Q9SIL5	1.1e-24	48.15	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
Q9LSB8	1.9e-24	48.15	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
Q9FI80	2.7e-23	50.00	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX...	[more]
Q8LK93	8.0e-23	44.44	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_3G039360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF80	2.8e-55	99.11	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8127...	[more]
A0A5D3DQ32	2.2e-52	92.86	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B831	2.2e-52	92.86	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
A0A6J1F295	1.1e-46	83.93	pentatricopeptide repeat-containing protein At4g21065-like OS=Cucurbita moschata...	[more]
A0A6J1DL35	3.1e-46	85.71	pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]

BLAST of CsaV3_3G039360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31430.1	6.1e-26	50.00	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G20540.1	7.9e-26	48.15	mitochondrial editing factor 21	[more]
AT3G15930.1	1.4e-25	48.15	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G48910.1	2.0e-24	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G02980.1	5.7e-24	44.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 84..110 e-value: 2.8E-4 score: 20.9 coord: 55..78 e-value: 0.0069 score: 16.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..143 e-value: 9.5E-22 score: 79.7
None	No IPR available	PANTHER	PTHR47926:SF147	OS01G0814300 PROTEIN	coord: 1..110
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..110
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039360.1	CsaV3_3G039360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding