CsaV3_3G039180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32214518 .. 32215243 (+)
RNA-Seq Expression	CsaV3_3G039180
Synteny	CsaV3_3G039180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

mRNA sequence

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Coding sequence (CDS)

ATGATGAGTGAGGACAATTGTTGCAAAGCGAAGATCAGAAACAAAGGCAGCGACGAACATTCTCCCATAGTGTTGTCGTTGTTGGACGAAAGATTTGAAGGGGGAAATGGTGTTTTTATAAAAATGCAAAAGACAGAGAGATTAGAGATTGAAGATCCAGAAAGTCCAAGATTATTAAGAAAAGAAATTACTATGAACAGTGCTGCAGACTACATCAGCAACGGCAGCGACGTACATTCTCCAACAGTGTCCTCCTTGTTGTTGGCAGAGATATTTGAAGGAGAAAATGATGTTTTTCTAAAAATGCAAAAGACAAAGAGATTAGAGAGCGAAGATCAAGAAAGTGCAAGATTATTAGGAAAAGAAATTACCAAGAAGAGTGCAAACAATGGCAACATCGGCAATGACGGAGACGTAAATTCTCCGACATTGTCGTCGTTGTCTGAGGAGATGATATTATCTGAAGGGGAAAATGATGTATTGCAAAAGATGCAAAAGAGATTAAAGAGTGAAGACCAAGAAAGTCCAAGAATAATAATATCAATAACAGAAAGCAAGAAGAAGAGTGAAAAAGAAGAAACTAAAGAAAGTTTGGAAAATAATTCAGAAATAATGGGGTGGATTCCAGGGATAGAGATACCAGGACCAATACCTGATATTGATCCCATTATTCAGCAGCAATTCAATCTTCATACAATTTTGGATGATCCATTCCTTGATGATTGA

Protein sequence

MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLRKEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLGKEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIIISITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLDD*

Homology

[Close]

BLAST of CsaV3_3G039180 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_002297 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of CsaV3_3G039180 vs. NCBI nr
Match: TYK25435.1 (hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.4e-90
Identity = 200/303 (66.01%), Postives = 221/303 (72.94%), Query Frame = 0


Query: 2   MSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLRK 61
           MSEDNCCKAK RNKGSDEHSPIVLSLLDERF+GGN VFIKM+K +RLEIED ES RLLRK
Sbjct: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKRLEIEDLESSRLLRK 60

Query: 62  EITMNSAADYISNGSD-------------------------------------------- 121
           EIT  SA  +ISNGSD                                            
Sbjct: 61  EITTKSADHHISNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIK 120

Query: 122 -----------------VHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 181
                            VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLG
Sbjct: 121 KFTKKSANKDYVSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLG 180

Query: 182 KEITKK-SANNGNIGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRI 241
           K+ITKK S N G++ ND  DV+SPTLSSLS E+++SEGENDVLQKMQKRL+SEDQESPR 
Sbjct: 181 KDITKKISTNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESEDQESPR- 240

[Close]

BLAST of CsaV3_3G039180 vs. ExPASy TrEMBL
Match: A0A0A0LEJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 5.9e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60
           MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR
Sbjct: 1   MMSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLR 60

Query: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120
           KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG
Sbjct: 61  KEITMNSAADYISNGSDVHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 120

Query: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180
           KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII
Sbjct: 121 KEITKKSANNGNIGNDGDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRIII 180

Query: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240
           SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD
Sbjct: 181 SITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPFLD 240

Query: 241 D 242
           D
Sbjct: 241 D 241

[Close]

BLAST of CsaV3_3G039180 vs. ExPASy TrEMBL
Match: A0A5D3DPL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005790 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.8e-91
Identity = 200/303 (66.01%), Postives = 221/303 (72.94%), Query Frame = 0


Query: 2   MSEDNCCKAKIRNKGSDEHSPIVLSLLDERFEGGNGVFIKMQKTERLEIEDPESPRLLRK 61
           MSEDNCCKAK RNKGSDEHSPIVLSLLDERF+GGN VFIKM+K +RLEIED ES RLLRK
Sbjct: 1   MSEDNCCKAKNRNKGSDEHSPIVLSLLDERFDGGNDVFIKMEKKKRLEIEDLESSRLLRK 60

Query: 62  EITMNSAADYISNGSD-------------------------------------------- 121
           EIT  SA  +ISNGSD                                            
Sbjct: 61  EITTKSADHHISNGSDVHSPALSSLLKEISKRENDVLLNTQKTNRLEIEKDEERPRLFIK 120

Query: 122 -----------------VHSPTVSSLLLAEIFEGENDVFLKMQKTKRLESEDQESARLLG 181
                            VHSPTVSSLLL EIFEGENDVFLK+QK +RLESED+E+ARLLG
Sbjct: 121 KFTKKSANKDYVSNDGEVHSPTVSSLLLDEIFEGENDVFLKIQKAQRLESEDEENARLLG 180

Query: 182 KEITKK-SANNGNIGNDG-DVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSEDQESPRI 241
           K+ITKK S N G++ ND  DV+SPTLSSLS E+++SEGENDVLQKMQKRL+SEDQESPR 
Sbjct: 181 KDITKKISTNKGHVSNDAKDVDSPTLSSLS-EVLISEGENDVLQKMQKRLESEDQESPR- 240

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59339.1	1.2e-126	100.00	hypothetical protein Csa_002297 [Cucumis sativus]	[more]
TYK25435.1	1.4e-90	66.01	hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G039180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEJ7	5.9e-127	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1	[more]
A0A5D3DPL9	6.8e-91	66.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_3G039180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039180.1	CsaV3_3G039180.1	mRNA