CsaV3_3G039160 (gene) Cucumber (Chinese Long) v3

BLAST of CsaV3_3G039160 vs. NCBI nr
Match: KGN59479.2 (hypothetical protein Csa_002080 [Cucumis sativus])

HSP 1 Score: 3430.2 bits (8893), Expect = 0.0e+00
Identity = 1733/1733 (100.00%), Postives = 1733/1733 (100.00%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
            TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
            ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080
            REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
Sbjct: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080

Query: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140
            ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED
Sbjct: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140

Query: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260
            LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260

Query: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320
            SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP
Sbjct: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320

Query: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380
            DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED
Sbjct: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380

Query: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440
            DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK
Sbjct: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440

Query: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500
            EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI
Sbjct: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500

Query: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560
            IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY
Sbjct: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560

Query: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620
            SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG
Sbjct: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620

Query: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTEKDNIQTVNQ 1680
            GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTEKDNIQTVNQ
Sbjct: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTEKDNIQTVNQ 1680

Query: 1681 FSFFGLTTARRHQRLRMALSVDCRRSSSKSLCKFATREHHLFHGFLSSFSLSI 1734
            FSFFGLTTARRHQRLRMALSVDCRRSSSKSLCKFATREHHLFHGFLSSFSLSI
Sbjct: 1681 FSFFGLTTARRHQRLRMALSVDCRRSSSKSLCKFATREHHLFHGFLSSFSLSI 1733

BLAST of CsaV3_3G039160 vs. NCBI nr
Match: XP_011652120.1 (DNA-directed RNA polymerase I subunit 1 isoform X1 [Cucumis sativus] >XP_011652121.1 DNA-directed RNA polymerase I subunit 1 isoform X1 [Cucumis sativus] >XP_031738087.1 DNA-directed RNA polymerase I subunit 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 3306.5 bits (8572), Expect = 0.0e+00
Identity = 1670/1670 (100.00%), Postives = 1670/1670 (100.00%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
            TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
            ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080
            REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
Sbjct: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080

Query: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140
            ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED
Sbjct: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140

Query: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260
            LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260

Query: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320
            SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP
Sbjct: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320

Query: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380
            DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED
Sbjct: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380

Query: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440
            DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK
Sbjct: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440

Query: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500
            EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI
Sbjct: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500

Query: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560
            IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY
Sbjct: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560

Query: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620
            SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG
Sbjct: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620

Query: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1670

BLAST of CsaV3_3G039160 vs. NCBI nr
Match: KAA0043701.1 (DNA-directed RNA polymerase I subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3164.8 bits (8204), Expect = 0.0e+00
Identity = 1598/1665 (95.98%), Postives = 1626/1665 (97.66%), Query Frame = 0

Query: 7    GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 66
            GASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS
Sbjct: 95   GASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 154

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 126
            CGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE CKTLLEL
Sbjct: 155  CGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKCKTLLEL 214

Query: 127  ILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKP 186
            ILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV +FLKP
Sbjct: 215  ILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVVNRFLKP 274

Query: 187  KQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEET 246
            KQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVSSLEEET
Sbjct: 275  KQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVSSLEEET 334

Query: 247  TTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGN 306
            TTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG+GN
Sbjct: 335  TTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGNGN 394

Query: 307  KAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK 366
            KAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHANK EHS+
Sbjct: 395  KAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHANKLEHSR 454

Query: 367  IVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSV 426
            IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVNFACRSV
Sbjct: 455  IVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVNFACRSV 514

Query: 427  ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV 486
            ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV
Sbjct: 515  ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV 574

Query: 487  KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK 546
            KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK
Sbjct: 575  KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK 634

Query: 547  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY 606
            PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY
Sbjct: 635  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY 694

Query: 607  VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 666
            VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI
Sbjct: 695  VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 754

Query: 667  FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRD 726
            FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRGFFKCRD
Sbjct: 755  FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRGFFKCRD 814

Query: 727  MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARLDDDSLL 786
            MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARLDDDSLL
Sbjct: 815  MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARLDDDSLL 874

Query: 787  IFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDD 846
            IFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGFTCGVDD
Sbjct: 875  IFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGFTCGVDD 934

Query: 847  LLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 906
            LLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS NGEAALT
Sbjct: 935  LLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNNGEAALT 994

Query: 907  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 966
            SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG
Sbjct: 995  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 1054

Query: 967  QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 1026
            QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD
Sbjct: 1055 QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 1114

Query: 1027 TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1086
            TAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA
Sbjct: 1115 TAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1174

Query: 1087 LAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKEDFIRLLE 1146
            LAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPGLV+KEDFIRLLE
Sbjct: 1175 LAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPGLVVKEDFIRLLE 1234

Query: 1147 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1206
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1235 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1294

Query: 1207 DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLR 1266
            DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRK EICSIYKLR
Sbjct: 1295 DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKLEICSIYKLR 1354

Query: 1267 IDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKG 1326
            IDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKINGIKNFVPDSQSK 
Sbjct: 1355 IDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKINGIKNFVPDSQSKV 1414

Query: 1327 SSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAK 1386
            SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMDYEDDSEDDLNAK
Sbjct: 1415 SSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMDYEDDSEDDLNAK 1474

Query: 1387 ESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKV 1446
            E STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKEKTTETS++KKKV
Sbjct: 1475 EPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKEKTTETSEKKKKV 1534

Query: 1447 KSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQ 1506
            KSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVSIQRSGKIIQCQQ
Sbjct: 1535 KSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVSIQRSGKIIQCQQ 1594

Query: 1507 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1566
            ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH
Sbjct: 1595 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1654

Query: 1567 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1626
            AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS
Sbjct: 1655 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1714

Query: 1627 ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1715 ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1758

BLAST of CsaV3_3G039160 vs. NCBI nr
Match: XP_008443105.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit 1 [Cucumis melo])

HSP 1 Score: 3154.0 bits (8176), Expect = 0.0e+00
Identity = 1596/1671 (95.51%), Postives = 1626/1671 (97.31%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV
Sbjct: 121  KTLLELILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
             +FLKPKQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  NRFLKPKQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQG+GNKAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGNGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            K EHS+IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS N
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
            ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080
            REGLVDTAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
Sbjct: 1021 REGLVDTAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080

Query: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140
            ITKFEALAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPGLV+KED
Sbjct: 1081 ITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPGLVVKED 1140

Query: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260
            LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRK EIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKLEIC 1260

Query: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320
            SIYKLRIDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKINGIK   P
Sbjct: 1261 SIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKINGIKILFP 1320

Query: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMDYEDDSE 1380
               ++ SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMDYEDDSE
Sbjct: 1321 -IHNQRSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMDYEDDSE 1380

Query: 1381 DDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETS 1440
            DDLNAKE STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKEKTTETS
Sbjct: 1381 DDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKEKTTETS 1440

Query: 1441 KEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGK 1500
            ++KKKVKSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVSIQRSGK
Sbjct: 1441 EKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVSIQRSGK 1500

Query: 1501 IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI 1560
            IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI
Sbjct: 1501 IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI 1560

Query: 1561 YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL 1620
            YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL
Sbjct: 1561 YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL 1620

Query: 1621 GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1621 GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1669

BLAST of CsaV3_3G039160 vs. NCBI nr
Match: TYK25433.1 (DNA-directed RNA polymerase I subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3113.2 bits (8070), Expect = 0.0e+00
Identity = 1592/1737 (91.65%), Postives = 1620/1737 (93.26%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV
Sbjct: 121  KTLLELILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
             +FLKPKQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  NRFLKPKQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQG+GNKAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGNGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            K EHS+IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS N
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKG       
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKG------- 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
                 GQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  -----GQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REG--------------------------------------------------------- 1080
            REG                                                         
Sbjct: 1021 REGSGTVLWGAVRRMLCTWSVILFAKQRGIWGKIAAFLPPVLHVLGKGSSFPFKASKWPD 1080

Query: 1081 ---------LVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVD 1140
                     LVDTAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVD
Sbjct: 1081 GREIPLPGRLVDTAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVD 1140

Query: 1141 VHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPG 1200
            VHKTAFITKFEALAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPG
Sbjct: 1141 VHKTAFITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPG 1200

Query: 1201 LVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI 1260
            LV+KEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI
Sbjct: 1201 LVVKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI 1260

Query: 1261 PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ 1320
            PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ
Sbjct: 1261 PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ 1320

Query: 1321 RKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKING 1380
            RK EICSIYKLRIDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKING
Sbjct: 1321 RKLEICSIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKING 1380

Query: 1381 IKNFVPDSQSKGSSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMD 1440
            IKNFVPDSQSK SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMD
Sbjct: 1381 IKNFVPDSQSKVSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMD 1440

Query: 1441 YEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKE 1500
            YEDDSEDDLNAKE STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKE
Sbjct: 1441 YEDDSEDDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKE 1500

Query: 1501 KTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVS 1560
            KTTETS++KKKVKSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVS
Sbjct: 1501 KTTETSEKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVS 1560

Query: 1561 IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE 1620
            IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE
Sbjct: 1561 IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE 1620

Query: 1621 LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY 1671
            LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY
Sbjct: 1621 LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY 1680

BLAST of CsaV3_3G039160 vs. ExPASy Swiss-Prot
Match: Q9SVY0 (DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1 PE=3 SV=1)

HSP 1 Score: 1805.0 bits (4674), Expect = 0.0e+00
Identity = 965/1686 (57.24%), Postives = 1206/1686 (71.53%), Query Frame = 0

Query: 7    GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 66
            GAS+ V+ V FSFMT ++VRK S +KVT+PIL D +G P  GGLYD  +G  D+   C S
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 126
            CGQ    CPGHCGHI+LV P+Y+PLLF +L NFL+  CF CHHF A    VE   + L+L
Sbjct: 82   CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 127  ILDGEIAKAKELEEEW-MNSKSRTKSSHSMYT------YERKNGQPETWTSLQFSEAISV 186
            I+ G+I  AK+LE      SKS  +S  S+ T       E  + + + WTSLQF+E  +V
Sbjct: 142  IIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAV 201

Query: 187  VTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAE-- 246
            +  F++    +C  C   +PK+ KP FGW  M+ +      AN IR  K    +S  E  
Sbjct: 202  LKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENP 261

Query: 247  ------GVSSLEE-ETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEA 306
                  G+ +L E E   + T E   +V+ E   +++ S   LLPSEV++ILK LW+NE 
Sbjct: 262  DGFDDSGIDALSEVEDGDKETREKSTEVAAE--FEEHNSKRDLLPSEVRNILKHLWQNEH 321

Query: 307  LLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQS 366
              CSFI D+ Q G   K  +SMFFLESVLVPP KFRPP  GGDSVMEHPQTV LNKV++S
Sbjct: 322  EFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIES 381

Query: 367  NISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMF 426
            N  LGN   NK + SK++  W +LQ+S+N+LFDSK+A    + D+S GICQLLEKKEG+F
Sbjct: 382  NNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATVQSQRDSS-GICQLLEKKEGLF 441

Query: 427  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGP 486
            RQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVT WNV+KLR AIINGP
Sbjct: 442  RQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGP 501

Query: 487  ETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRH 546
            + HPGATHY DK +T+K  L  + K+R +I+RKL SSRG   + G   D  FEGK V+RH
Sbjct: 502  DIHPGATHYSDKSSTMK--LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRH 561

Query: 547  LQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQD 606
            ++DGDIVLVNRQPTLHKPS+MAH VRVLKGEKT+R+HYANCSTYNADFDGDEMNVHFPQD
Sbjct: 562  MRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQD 621

Query: 607  EISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSG 666
            EISRAEAYNIVNANNQY +P++GEP+RALIQDHI+S+VLLTK+DTFL+ D F+QLL+SSG
Sbjct: 622  EISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSG 681

Query: 667  ISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF 726
            ++       S + G+K+     DAE+L V PA+ KP PLWTGKQV+TA+L+ IT+G PPF
Sbjct: 682  VTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPF 741

Query: 727  FVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEH 786
             VEK  K+P  FFKCR     S +VK   GD +K+K                        
Sbjct: 742  TVEKATKLPVDFFKCR-----SREVKPNSGDLTKKK------------------------ 801

Query: 787  TKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSR 846
             ++D+     L++D L I KNE V GVIDKAQF DYGLVHTV ELYGSN AG LLSV SR
Sbjct: 802  -EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSR 861

Query: 847  LFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTL 906
            LFTVFLQTHGFTCGVDDL++++ MD+ER KQLQ CE +GE+V      +    ++DP  +
Sbjct: 862  LFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDM 921

Query: 907  QLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTS 966
            +  IE+ +  +GE+AL SLDR + + LN+   +  V+ DLLS+GLLK   +NCISLMT S
Sbjct: 922  RSRIERILYEDGESALASLDRSIVNYLNQ-CSSKGVMNDLLSDGLLKTPGRNCISLMTIS 981

Query: 967  GAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLR 1026
            GAKG   NFQQISSHLGQQ LEGKRVPRMVSGKTLPCF PWDW+ RAGGFI DRFL+GLR
Sbjct: 982  GAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLR 1041

Query: 1027 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYG 1086
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD TVRDADGS+IQFQYG
Sbjct: 1042 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYG 1101

Query: 1087 EDGVDVHKTAFITKFEALAANQDMLYEN-SHHQLGKYNVFINELPSALREKGEFIYNSLS 1146
            EDGVDVH+++FI KF+ L  NQDM+ +  S   L   + +I++LP +L++  E    ++ 
Sbjct: 1102 EDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMP 1161

Query: 1147 KDK--VPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1206
             ++      V +E+ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRG
Sbjct: 1162 MNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRG 1221

Query: 1207 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMN 1266
            EMNVTLGIPRLQEILMTA+ +IKTPIMTCPL +G + + A  + ++L+KITVADII+SM 
Sbjct: 1222 EMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSME 1281

Query: 1267 VTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREM 1326
            ++VVP++  + E+CSI+KL+I+ Y  E+  +H  I+ ED E T+  VFL +LE  IE  M
Sbjct: 1282 LSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHM 1341

Query: 1327 VLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQEEND-DDDDEGNDLDVAEDLGSDMKKQK 1386
             +L +I GI N V    +   ++ D+  S +Q E+D DDD EG ++D   DLGSD +KQK
Sbjct: 1342 KMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD---DLGSDAQKQK 1401

Query: 1387 LQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVD 1446
             Q  DEMDYE++SED+ N   S +G E      D    + N+  E+ K+   E Q E ++
Sbjct: 1402 KQETDEMDYEENSEDETNEPSSISGVE------DPEMDSENEDTEVSKEDTPEPQEESME 1461

Query: 1447 VSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKF-TNEPHTLLSQI 1506
              K +   K  +   +KK+ K   VR ++DR IFV+ +   FEVHFKF T++PH LL+QI
Sbjct: 1462 PQKEVKGVKNVKEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFATDDPHILLAQI 1521

Query: 1507 VQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDF 1566
             Q+ AQKV IQ SGKI +C    C + QVIYHG+N KER+ +  +EK+  PAL  SGVDF
Sbjct: 1522 AQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDF 1581

Query: 1567 KTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVA 1626
              LWE QD+LDVRY+YSN IH ML  +GVEAAR TIIREI ++F SYGISV+IRHL+L+A
Sbjct: 1582 PALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIA 1641

Query: 1627 DYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGL 1671
            DYMT SGGYRPMSR+GGI++S SPF RMTFETA KFIVQAA +GE D LETPS+RICLGL
Sbjct: 1642 DYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGL 1659

BLAST of CsaV3_3G039160 vs. ExPASy Swiss-Prot
Match: P15398 (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa1 PE=1 SV=2)

HSP 1 Score: 919.8 bits (2376), Expect = 4.4e-266
Identity = 633/1798 (35.21%), Postives = 930/1798 (51.72%), Query Frame = 0

Query: 9    SESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCG 68
            S  +K V F     ++V K SV ++  P+LLD +  P +GGLYD A+G   + ++C +C 
Sbjct: 8    SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCH 67

Query: 69   QRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGE-------------- 128
                YCPGH GHI L  P Y+PL F  ++N LR TC  CHHF+  +              
Sbjct: 68   LDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLD 127

Query: 129  -------SMVENCKTLLELILDGE----IAKAKELEEEWMNSKSRTKSSHSMYTY----- 188
                    MVEN  +L E I+       +    + E+  +      K + ++        
Sbjct: 128  YGLLNESEMVENV-SLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRDEFV 187

Query: 189  ------ERKNGQPET-WTSLQFSEAISVVTKFLK--PKQSNCKYCGAKSPKITKPTFGWF 248
                   R+N   +   T+L   E   VV  F      +  C  C + SP   K  F   
Sbjct: 188  AKSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEGFAKI 247

Query: 249  HMKGLAGV---------QKRANAIR-RSKPVSVSSGAEGVSSLEEETTTEATVEDFEDVS 308
                L+G          + R++ +R  SK      G +G S    E+  E      ED +
Sbjct: 248  FEIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDLFEEDPN 307

Query: 309  PEVFMQKN---FSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLE 368
            P     K+     + ++  +EV++ L+RL+  E ++   +S +     G  A   MFFL+
Sbjct: 308  PLKNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVV---LSRLYAHKRGKPASADMFFLQ 367

Query: 369  SVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGN---------------GHANK 428
            ++ VPP +FRP +K GD V E+ Q  LL ++LQS+I + +               G   +
Sbjct: 368  NIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDEKEGLERR 427

Query: 429  SE-HSKIVRLWMDLQQSINILFDSKSAAGPGKNDASL--GICQLLEKKEGMFRQKMMGKR 488
            S     ++  ++ LQ  +N L DS      G    ++  GI Q+LEKKEG+FR+ MMGKR
Sbjct: 428  SRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQILEKKEGLFRKHMMGKR 487

Query: 489  VNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATH 548
            VN+A RSVISPDP +  NEIG+PP FA +LTYPE VT +N  ++RNA+INGP   PGA+H
Sbjct: 488  VNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASH 547

Query: 549  YIDKLATVKLNLKPSRKSRISISRKL--PSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIV 608
              ++  T+   +  + + R +++ +L  P S  +             K V RH+++GD++
Sbjct: 548  IQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDML 607

Query: 609  LVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA 668
            ++NRQPTLHKPS+MAH  R+L GEKTIRMHYANC++YNADFDGDEMN+HFPQ   +R+EA
Sbjct: 608  ILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEA 667

Query: 669  YNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKAC 728
              I N ++QY+ PTSG+P+R LIQDH++  V LT KDTF   DE+ QLL+ +        
Sbjct: 668  QFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQA-------- 727

Query: 729  ASSEKPGQ--KIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKD 788
               ++ G   +I TL          PA+ +P   WTGKQ+++++L ++     P      
Sbjct: 728  LKPDETGMYGRIKTLP---------PAIQRPGIYWTGKQIISSVLLNLKPSDRPGL---- 787

Query: 789  VKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDK 848
                          N  SK K+                                     K
Sbjct: 788  --------------NLKSKAKV-----------------------------------PGK 847

Query: 849  LKAARLDDDSLLIFKNELVRGVIDKAQFG--DYGLVHTVQELYGSNTAGLLLSVMSRLFT 908
              +   ++ S+L    EL+ G++DK+ FG   +GLVH+V ELYG + AG LLSV+SRLFT
Sbjct: 848  YWSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFT 907

Query: 909  VFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLN 968
             + Q  GFTC +DDL L E  D  R + L+  +  G +    ++    G   D     LN
Sbjct: 908  AYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYV----GLSTDSPIALLN 967

Query: 969  IEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAK 1028
                  Y  +  L  LD  M  ++N  T  S ++   + +GLL     N +  MT SGAK
Sbjct: 968  ANLEEVYRDDEKLQGLDAAMKGKMNGLT--SSIINKCIPDGLLTKFPYNHMQTMTVSGAK 1027

Query: 1029 GGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQE 1088
            G   N  QIS  LGQQ+LEG+RVP MVSGK+LP F P++ ++++GGFI  RFLTG+ PQE
Sbjct: 1028 GSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQE 1087

Query: 1089 YYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDG 1148
            YYFHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L + YDHTVRD+DGS++QF YGED 
Sbjct: 1088 YYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDS 1147

Query: 1149 VDVHKTAFITKFEALAANQDMLYE----------------NSHHQLG-----KYNVFINE 1208
            +DV K   +T+FE  A N   L +                +S+ +       KY+  +++
Sbjct: 1148 LDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDK 1207

Query: 1209 LP-----SALREKGEFI---YNSLSKDKV----------PGLVLKEDFIRLLENKYLSSL 1268
             P      ++ EK +     Y   + DK+            L+ +  F  L++ +Y  SL
Sbjct: 1208 YPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSL 1267

Query: 1269 AQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIM 1328
              PGE VGVLA+QSIGEPSTQMTLNTFH AG G  NVTLGIPRL+EI+MTAS +I+TP M
Sbjct: 1268 VDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTM 1327

Query: 1329 TCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLE 1388
            T  L +G S   A     ++ K+ +++++  + VT     Q   E    Y +R+D Y  +
Sbjct: 1328 TLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSKTYAIRLDLYSRD 1387

Query: 1389 NNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDS-QSKGSSEGDE 1448
                   +  E++E+T    FL+           +L++I  IK+++  S Q K   + D 
Sbjct: 1388 EYQDEYGVLQEEIESTFSNRFLK-----------ILNRI--IKSYLAKSKQRKSGGKDDT 1447

Query: 1449 VSSSRQ-----EENDDDDDEGNDLDVAEDLGSDMKKQKL--QANDEMDYEDDSEDDLNA- 1508
            V    Q     E+ D+   EG   +  ED  +D   +K+  ++     YE   E D  A 
Sbjct: 1448 VPEVGQALKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVAL 1507

Query: 1509 ---KESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKE 1568
               K S+   +  +D+ ++    +++ +   K+     +   V +S+   +E   +T+KE
Sbjct: 1508 RQLKGSNKVEDVNMDEEEDEGFKSDESVSDFKERKLLEKQNTVSISE--RRELQLKTAKE 1567

Query: 1569 KKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKII 1628
               + S     + D   +V  +    E+ F    E   L+  +V++A  +  I     I 
Sbjct: 1568 ---ILSNCKHLDFD---YVNGEWATVELVFPINTE-KLLMVSLVEKACSETVIHEIPGIT 1627

Query: 1629 QCQQITCKEGQVIYHGNNLKERKNLKPEEK--EKIPALQTSGVDFKTLWEMQDELDVRYI 1678
            +C                       KP +   + +P + T GV+ K +WE  +E+ +  I
Sbjct: 1628 RCFS---------------------KPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDI 1681

BLAST of CsaV3_3G039160 vs. ExPASy Swiss-Prot
Match: Q86H36 (DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum OX=44689 GN=polr1a PE=3 SV=1)

HSP 1 Score: 902.5 bits (2331), Expect = 7.3e-261
Identity = 619/1747 (35.43%), Postives = 893/1747 (51.12%), Query Frame = 0

Query: 10   ESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQ 69
            E +  V+F F T+++VRK SV ++      D +G PV GGL+DPA+G       C +C  
Sbjct: 11   EEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSL 70

Query: 70   RPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILD 129
                CPGH GHI+L  P YNP+ F  +   L+  CF CHHF+ G+ ++      L L+  
Sbjct: 71   DFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEELTLLFK 130

Query: 130  GEIAKAKELE---------EEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAI-SV 189
            G++ KA+ L          EE    KS  +    M + E  + + +T  +    + I   
Sbjct: 131  GDVVKARNLRERNVLLRGYEEKKKGKSNEEGEEVMESDESDSDKMDTDENKTNGKIICDG 190

Query: 190  VTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIR-RSKPVSVSSGAEG 249
            V    +       +      ++ K  FG F   G A       A   R +    S     
Sbjct: 191  VFNAKEIYSGKATHIEDFKREVFKEFFGSF--SGYAIPCGNCGAYSPRLRNGDASKSKLF 250

Query: 250  VSSLEEETTTEATVEDFEDVSPEVFMQKNFSS--------GHLLPSEVKDILKRLWKNE- 309
            +  L ++  T+         +  + +  NFSS            P EV D +K+L++NE 
Sbjct: 251  IMPLHDKYATK---------NSAIKLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLFENEK 310

Query: 310  ----ALLCSFISDISQQGHGNKAGHSMFFLESVL---------VPPIKFRPPAKGGDSVM 369
                 LL   +  ++ +G   K     F  ES +         V P ++RPP        
Sbjct: 311  EILDMLLGHLVPIVTNKGGAKKNVGRQFTKESNVDSLFMRVFPVTPARYRPPNFVNGRRS 370

Query: 370  EHPQT------VLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGP 429
            EHPQ       V  NK+++ +I  G G A       +V    DLQ  +N ++D+ S +  
Sbjct: 371  EHPQNSHYKGMVKSNKMIRQSIDAGEGKA-----KFLVNSVCDLQMHVNNMYDN-SKSNS 430

Query: 430  GKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTY 489
              N+ + GI Q+LEKKEG+FR+ MMGKRVN+A R+VISPD  L  NE+G+P YFA  LT+
Sbjct: 431  NTNEVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTF 490

Query: 490  PERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSS--- 549
            P+ VT++N  +L  A+INGPE +PGA    D+   +    K S++ RI++S+ L +S   
Sbjct: 491  PQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQEKRIALSKTLLTSHPH 550

Query: 550  --RGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL-KGEKTIR 609
              RGV             K V RHL  GD VL NRQPTLHKP IM H V+VL K EKT+R
Sbjct: 551  APRGV------------NKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLR 610

Query: 610  MHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHII 669
            MHY+NCSTYNADFDGDEMN+HFPQ  ++ AE   I   N QY+ P +G P+R LIQDHI+
Sbjct: 611  MHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHIL 670

Query: 670  SAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWK 729
            + VLLTK+DT     +F  +LY+S  S +        P                 P + K
Sbjct: 671  TGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPP-----------------PCILK 730

Query: 730  PEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKR 789
            P PLW+GKQ+++A L+ +T G  P  +E   KIP                          
Sbjct: 731  PVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIP-------------------------- 790

Query: 790  KRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARLDDDS-LLIFKNELVRGVIDKAQFG 849
                                     TK+   K   +  DS ++I +NE+V G++DK  FG
Sbjct: 791  -------------------------TKMWGTKGLEITRDSHVIIRQNEMVAGILDKGHFG 850

Query: 850  --DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQL 909
               YGLVHT  ELY  + AG LL+++ R+FT +LQ+ GFTCGVDDLL+    +KE + ++
Sbjct: 851  ASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLM---KNKEEKFRV 910

Query: 910  QICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTG 969
            +  +K  E+ +    K  D  K D    +    K +    E A   LD  +   LN+ T 
Sbjct: 911  ETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREVA--RLDGLLKKGLNQYT- 970

Query: 970  NSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSG 1029
             SKV+  L+  G  KP  KN  SLMT SGAKG   NF Q+S  LGQQ+LEGKRVPRMVSG
Sbjct: 971  -SKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSG 1030

Query: 1030 KTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL 1089
            KTLP F  +D ++RAGGF++DRFLTG+RPQ+Y+FHCMAGREGL+DTAVKTSRSGYLQRCL
Sbjct: 1031 KTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCL 1090

Query: 1090 IKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAAN----------Q 1149
            IK+LE L + YD+TVR++DGSVIQF YGED +++ KT ++TKF  +A N          +
Sbjct: 1091 IKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELFKSQFPME 1150

Query: 1150 DMLYENSHHQLGKYNVFINELP--------------------SALREKGEFIYNSLSK-- 1209
             ++ +  + ++ +YN  I   P                    S + +   +I ++  K  
Sbjct: 1151 QLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQLNHYIESNPQKLI 1210

Query: 1210 ---DKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1269
                   G + ++DF  L+   Y  S+  PGE VG+L AQSIGEPSTQMTLNTFH AGRG
Sbjct: 1211 KTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRG 1270

Query: 1270 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMN 1329
            E NVTLGIPRL+E++MTA+    TP+M   + +  +    + +A  L+ + ++DII+ + 
Sbjct: 1271 EANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEILKLSDIIKDIT 1330

Query: 1330 VTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREM 1389
            V    F    R     Y + I+F P        H   E   N L      E   +I+R++
Sbjct: 1331 VQEY-FQDTNRN----YDIEIEFIPTLQQVLSLHRIKEKQLNKL----FGEFNKVIKRQV 1390

Query: 1390 VLLSKI---NGIKNFVPDSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKK 1449
                K+   NG        +     E D ++ +  +   +DD   ND + ++   S   K
Sbjct: 1391 KSQGKLKVNNGDIGLGSKVRGSDLVEDDSLTINDDDAPANDDTTNNDENTSQQQPSSQNK 1450

Query: 1450 QKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEI 1509
            +        D +  +    N K+ +  +E   ++ +E +    +      D  S+   + 
Sbjct: 1451 KSKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEKDSDEGESEAEESDDKSDVDSDS 1510

Query: 1510 VDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQ 1569
             ++S S S                      +D SI  + K+  F +    ++    L+  
Sbjct: 1511 DEISNSRSSNSF------------------SDESIEFDQKKLTFTISVA-SDSKKVLMLG 1570

Query: 1570 IVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVD 1629
            IV+  A K  ++    I +C     + G   ++                   ++Q+ GV+
Sbjct: 1571 IVETEASKFVLKSCKGITRCFVNEKQVGGKTHY-------------------SIQSEGVN 1605

Query: 1630 FKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLV 1671
               ++E++D+L +  IY+NDI+A+LQ YGVEA R  +  EI N+F +YGISV+ RHL L+
Sbjct: 1631 LSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILL 1605

BLAST of CsaV3_3G039160 vs. ExPASy Swiss-Prot
Match: P10964 (DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPA190 PE=1 SV=2)

HSP 1 Score: 871.7 bits (2251), Expect = 1.4e-251
Identity = 594/1773 (33.50%), Postives = 906/1773 (51.10%), Query Frame = 0

Query: 15   VTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYC 74
            V F  +T +E+R  S  ++T P +LD +G PVSGGLYD A+G+     LC +CG    +C
Sbjct: 14   VDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAF-LRNLCSTCGLDEKFC 73

Query: 75   PGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAK 134
            PGH GHI+L  P YNPL F  L+ +LR +C  CHHFR     V      L L+  G I +
Sbjct: 74   PGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDE 133

Query: 135  AKELEEEWMNS-----------------------KSRTKSSHSMYTYERKNGQPE----- 194
            + +L+E  + S                         ++K   S    E K+ + E     
Sbjct: 134  SYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNELKSKRSEYVDMA 193

Query: 195  --------------TWTSLQFSEAISVVTKFLKP--KQSNCKYCGAKSPKITKPTFGWFH 254
                          ++T+    E   +V +F K    +  C  CG  SPK  K  F    
Sbjct: 194  IAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIF 253

Query: 255  MKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDFEDVSPEVFMQKNFSS 314
               L   Q   N ++      +    +    L+      A  E+  DV      +    S
Sbjct: 254  ETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDVGRNPTTRPKTGS 313

Query: 315  GHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAK 374
             ++L +EVK+IL  +++ E  +  ++                FF++ ++VPP +FR P+K
Sbjct: 314  TYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSK 373

Query: 375  GGDSVMEHPQTVLLNKVLQSNISLGNGHANKSE--------------HSKIVRLWMDLQQ 434
             G+ V E+ Q  LL+KVL +++ + + + + S+               S+++  ++ +Q 
Sbjct: 374  LGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQN 433

Query: 435  SINILFDSKSAAGPGKNDASL-GICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAV 494
             +N   DS  A G       + G+ Q LEKKEG+FR+ MMGKRVN+A RSVISPDP +  
Sbjct: 434  DVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIET 493

Query: 495  NEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRK 554
            NEIG+PP FA++LTYPE VTA+N+ +LR A+INGP+  PGAT   ++  ++   +  S +
Sbjct: 494  NEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVE 553

Query: 555  SRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVR 614
             R +++ +L +    V     +      K V RH+++ D+VL+NRQPTLHK S+M H VR
Sbjct: 554  QRKALANQLLTPSSNVSTHTLN------KKVYRHIKNRDVVLMNRQPTLHKASMMGHKVR 613

Query: 615  VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPI 674
            VL  EKT+R+HYAN   YNADFDGDEMN+HFPQ+E +RAEA N+ N ++QY+ PTSG P+
Sbjct: 614  VLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPV 673

Query: 675  RALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE---KPGQKIFTLDFD 734
            R LIQDHI + V LT KD+F   +++ Q +Y         C   E       KI TL   
Sbjct: 674  RGLIQDHISAGVWLTSKDSFFTREQYQQYIY--------GCIRPEDGHTTRSKIVTLP-- 733

Query: 735  AEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSS 794
                   P ++KP PLWTGKQ++T +L ++T    P                   G N  
Sbjct: 734  -------PTIFKPYPLWTGKQIITTVLLNVTPPDMP-------------------GIN-- 793

Query: 795  KVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARLDDDSLLIFKNEL 854
                           +++NK+ K E   +G+                  ++ +L     L
Sbjct: 794  --------------LISKNKI-KNEYWGKGSL-----------------ENEVLFKDGAL 853

Query: 855  VRGVIDKAQFG--DYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDDLLLI 914
            + G++DK+Q+G   YG+VH++ E+YG   A  +LSV+ RLFT ++    FTCG+DDL L 
Sbjct: 854  LCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCGMDDLRLT 913

Query: 915  ECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDR 974
               +K R   L+     G +       +      D   L   +++ +  N ++ +  LD 
Sbjct: 914  AEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKSGI--LDA 973

Query: 975  KMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQL 1034
              +S++N  T  S+V+   + +G +K    N +  M  SGAKG   N  QI   LGQQ L
Sbjct: 974  VTSSKVNAIT--SQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQAL 1033

Query: 1035 EGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVK 1094
            EG+RVP MVSGKTLP F P++  + AGG++  RF +G++PQEYYFHCMAGREGL+DTAVK
Sbjct: 1034 EGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVK 1093

Query: 1095 TSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEALAAN 1154
            TSRSGYLQRCL K LE + + YD+++RDADG+++QF YG D +D+ K + +T+FE    N
Sbjct: 1094 TSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQFEFCLDN 1153

Query: 1155 ---------------------------QDMLYENSHHQ-------------LGKYN--VF 1214
                                       + + Y   H +             L KYN   +
Sbjct: 1154 YYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKY 1213

Query: 1215 INELPSALREKGEFIYNSLSK-DKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQS 1274
            +  +    ++K E   +  SK  K    V ++ F  L++ KY+ SL  PGE VG++A+QS
Sbjct: 1214 LGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQS 1273

Query: 1275 IGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAK 1334
            +GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+MTAS  IKTP MT P+    S + A 
Sbjct: 1274 VGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQAD 1333

Query: 1335 GLANKLKKITVADIIESMNVTVVPFSQRKR--EICSIYKLRIDFYPLENNAQHGHISPED 1394
                 + K+ ++++I+ + VT    +           Y + + F+     ++   +S E+
Sbjct: 1334 TFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEE 1393

Query: 1395 LENTLETVFLEELEGLIEREMVLLSKING--IKNFVPDSQSKGSSEGDEVSSSRQEENDD 1454
            L+N +   F+  LE  I +E+    +  G  I   VP  Q+  ++     S+S++ E D+
Sbjct: 1394 LQNVISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAVPRLQTDVANSS---SNSKRLEEDN 1453

Query: 1455 DDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEI 1514
            D+++ +            KK K      + Y++  ED++           E ++  + E 
Sbjct: 1454 DEEQSH------------KKTK----QAVSYDEPDEDEIETMR-------EAEKSSDEEG 1513

Query: 1515 TNNDMIEIVKDSASENQPEIVDVSKSMSK---EKTTETSKEKKKVKSELVRKETDRSIFV 1574
             ++D     K+S S+++ E VD+++ ++K   E     +K ++  +S ++      + + 
Sbjct: 1514 IDSD-----KESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYN 1573

Query: 1575 EAKENHFEVHFKFTNEPHT---LLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHG 1634
               E+     FK      T   L+  IV+   +K  I++   I +C              
Sbjct: 1574 FDDESGKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPHIDRC-------------- 1633

Query: 1635 NNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAAR 1671
                    + PE +     L T GV+F+ +W+ +  +DV  I SND+ A+L+TYGVEAAR
Sbjct: 1634 --------VHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAAR 1651

BLAST of CsaV3_3G039160 vs. ExPASy Swiss-Prot
Match: O95602 (DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2)

HSP 1 Score: 840.9 bits (2171), Expect = 2.6e-242
Identity = 598/1827 (32.73%), Postives = 910/1827 (49.81%), Query Frame = 0

Query: 15   VTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRPFYC 74
            ++F   + EE++K SV  +T P  LD +G P + GLYD A+G  D   +C +C Q    C
Sbjct: 15   ISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNC 74

Query: 75   PGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGEIAK 134
             GH GHI+L   VYNPLLF  L+  LR +C +CH      +++      L ++  G +  
Sbjct: 75   SGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQA 134

Query: 135  AKE--------LEEEWMNSKSRTKSSHSMYTYE--RKN--GQPETWTSLQFSEAISVVTK 194
              E        LEE    S S  +     YT E  + N  G               ++  
Sbjct: 135  VYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIAL 194

Query: 195  FLKPKQS--NCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 254
            F K   +   C +C      + K       +   A V + A   + S+P+ +     G  
Sbjct: 195  FWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQ-KDSEPLGIEEAQIG-- 254

Query: 255  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFI-SDI 314
                                          G+L P+  ++ L  LWKNE    +++ S +
Sbjct: 255  ----------------------------KRGYLTPTSAREHLSALWKNEGFFLNYLFSGM 314

Query: 315  SQQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNI------- 374
               G  ++   S+FFL+ ++VPP ++RP ++ GD +  + QTV L  V++  +       
Sbjct: 315  DDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLA 374

Query: 375  -----------------------------SLGNGHANKSEHSKIVRLWMDLQQSINILFD 434
                                         S  +    +S   K+  +W+ LQ  +NI+FD
Sbjct: 375  LMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFD 434

Query: 435  SKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPY 494
            S+        D   GI Q+LEKKEG+FR+ MMGKRV++A RSVI PD Y+  NEIGIP  
Sbjct: 435  SE--MDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMV 494

Query: 495  FALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRK 554
            FA +LTYP+ VT WNVQ+LR A+INGP  HPGA+  I++  +           R +++++
Sbjct: 495  FATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQ 554

Query: 555  -LPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT 614
             L  + G    QG        KIV RH+++GDI+L+NRQPTLH+PSI AH  R+L  EK 
Sbjct: 555  LLTPATGAPKPQGT-------KIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKV 614

Query: 615  IRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDH 674
            +R+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P  G+P+  LIQDH
Sbjct: 615  LRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDH 674

Query: 675  IISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAV 734
            ++S   +T +  F   + + +L+Y            ++K G+          +  + P++
Sbjct: 675  MVSGASMTTRGCFFTREHYMELVYR---------GLTDKVGR----------VKLLSPSI 734

Query: 735  WKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKS 794
             KP PLWTGKQVV+ LL +I              IP          N S K K+      
Sbjct: 735  LKPFPLWTGKQVVSTLLINI--------------IPEDHIPL----NLSGKAKIT----- 794

Query: 795  KRKRTMNENKLEKGEVLDEGNSKKKEHTK-VDKLKAARLDDDSLLIFKNELVRGVIDKAQ 854
                               G +  KE  + V       + +  ++I + EL+ GV+DKA 
Sbjct: 795  -------------------GKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAH 854

Query: 855  FGD--YGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTH-GFTCGVDDLLLIECMDKERE 914
            +G   YGLVH   E+YG  T+G +L+ ++RLFT +LQ + GFT GV+D+L+    D +R+
Sbjct: 855  YGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQ 914

Query: 915  KQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNE 974
            + ++     G Q     L + +    D   ++   +       +     +D K   ++N 
Sbjct: 915  RIIEESTHCGPQAVRAALNLPEAASYD--EVRGKWQDAHLGKDQRDFNMIDLKFKEEVNH 974

Query: 975  RTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRM 1034
               ++++ K  +  GL +   +N + +M  SGAKG T N  QIS  LGQ +LEG+R P M
Sbjct: 975  Y--SNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLM 1034

Query: 1035 VSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQ 1094
             SGK+LPCF P+++  RAGGF+  RFLTG++P E++FHCMAGREGLVDTAVKTSRSGYLQ
Sbjct: 1035 ASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQ 1094

Query: 1095 RCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFI--TKFEALAANQDMLYE 1154
            RC+IK+LE L + YD TVRD+DGSV+QF YGEDG+D+ KT F+   +F  LA+N +++ +
Sbjct: 1095 RCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMK 1154

Query: 1155 NSH--------------HQLGKYNVFINELPSALREKGEFI-YNSLSKDKVPGLVLK--- 1214
            + H              H       + ++ P+ L  +G F+ Y+   ++ V  L L+   
Sbjct: 1155 SQHLHEVLSRADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQEAVKALKLESEN 1214

Query: 1215 --------EDFIR----------------------------------------------- 1274
                    ++ +R                                               
Sbjct: 1215 RNGRSPGTQEMLRMWYELDEESRRKYQKKAAACPDPSLSVWRPDIYFASVSETFETKVDD 1274

Query: 1275 -------------------------LLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLN 1334
                                     LL+ K+  SL +PGE VG+LAAQSIGEPSTQMTLN
Sbjct: 1275 YSQEWAAQTEKSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLN 1334

Query: 1335 TFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCP-LKEGYSMDVAKGLANKLKKIT 1394
            TFH AGRGEMNVTLGIPRL+EILM AS +IKTP+M+ P L    ++   K L  +L ++ 
Sbjct: 1335 TFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVC 1394

Query: 1395 VADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEE 1454
            + ++++ ++V      + K+    +Y+LR  F P     Q   + PED+   +ET F + 
Sbjct: 1395 LGEVLQKIDVQESFCMEEKQNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKL 1454

Query: 1455 LEGLIEREMVLLSKINGIKNF-VPDSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAED 1514
            L   I+++    +K +  +N     +  +      E+  SR E+  D+++EG+ +D   +
Sbjct: 1455 LMESIKKKN---NKASAFRNVNTRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEAE 1514

Query: 1515 LG----SDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIV 1574
             G    SD K+++ Q  +E+DYE + E++   +E+        D  D  E  N       
Sbjct: 1515 EGDADASDAKRKEKQ-EEEVDYESEEEEEREGEEN--------DDEDMQEERNPH----- 1574

Query: 1575 KDSASENQPEIVDVSKSMSKEKTTET--SKEKKKVKSELVR--KETDRSIFVEAKENHFE 1634
            ++ A + Q +  +V     ++ +     ++ +K   S+  +  +  +R +    + + F 
Sbjct: 1575 REGARKTQEQDEEVGLGTEEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFI 1634

Query: 1635 VHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNN-----LKER 1671
              +++  E        V+    K++   S  +     ++   G VIY         L E 
Sbjct: 1635 DDYQYDTEESLWCQVTVKLPLMKINFDMSSLV-----VSLAHGAVIYATKGITRCLLNET 1694

BLAST of CsaV3_3G039160 vs. ExPASy TrEMBL
Match: A0A0A0LF53 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 3306.5 bits (8572), Expect = 0.0e+00
Identity = 1670/1670 (100.00%), Postives = 1670/1670 (100.00%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
            TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
            ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080
            REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
Sbjct: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080

Query: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140
            ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED
Sbjct: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140

Query: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260
            LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260

Query: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320
            SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP
Sbjct: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320

Query: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380
            DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED
Sbjct: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSED 1380

Query: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440
            DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK
Sbjct: 1381 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1440

Query: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500
            EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI
Sbjct: 1441 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1500

Query: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560
            IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY
Sbjct: 1501 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1560

Query: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620
            SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG
Sbjct: 1561 SNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLG 1620

Query: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1621 GISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1670

BLAST of CsaV3_3G039160 vs. ExPASy TrEMBL
Match: A0A5A7TQ71 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00270 PE=3 SV=1)

HSP 1 Score: 3164.8 bits (8204), Expect = 0.0e+00
Identity = 1598/1665 (95.98%), Postives = 1626/1665 (97.66%), Query Frame = 0

Query: 7    GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 66
            GASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS
Sbjct: 95   GASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 154

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 126
            CGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE CKTLLEL
Sbjct: 155  CGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKCKTLLEL 214

Query: 127  ILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKP 186
            ILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV +FLKP
Sbjct: 215  ILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVVNRFLKP 274

Query: 187  KQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEET 246
            KQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVSSLEEET
Sbjct: 275  KQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVSSLEEET 334

Query: 247  TTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHGN 306
            TTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG+GN
Sbjct: 335  TTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGNGN 394

Query: 307  KAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSK 366
            KAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHANK EHS+
Sbjct: 395  KAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHANKLEHSR 454

Query: 367  IVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSV 426
            IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVNFACRSV
Sbjct: 455  IVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVNFACRSV 514

Query: 427  ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV 486
            ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV
Sbjct: 515  ISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATV 574

Query: 487  KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK 546
            KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK
Sbjct: 575  KLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHK 634

Query: 547  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY 606
            PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY
Sbjct: 635  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQY 694

Query: 607  VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 666
            VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI
Sbjct: 695  VKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKI 754

Query: 667  FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRD 726
            FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRGFFKCRD
Sbjct: 755  FTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRGFFKCRD 814

Query: 727  MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARLDDDSLL 786
            MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARLDDDSLL
Sbjct: 815  MGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARLDDDSLL 874

Query: 787  IFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGFTCGVDD 846
            IFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGFTCGVDD
Sbjct: 875  IFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGFTCGVDD 934

Query: 847  LLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYNGEAALT 906
            LLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS NGEAALT
Sbjct: 935  LLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNNGEAALT 994

Query: 907  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 966
            SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG
Sbjct: 995  SLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQISSHLG 1054

Query: 967  QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 1026
            QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD
Sbjct: 1055 QQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLVD 1114

Query: 1027 TAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1086
            TAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA
Sbjct: 1115 TAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVDVHKTAFITKFEA 1174

Query: 1087 LAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKEDFIRLLE 1146
            LAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPGLV+KEDFIRLLE
Sbjct: 1175 LAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPGLVVKEDFIRLLE 1234

Query: 1147 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1206
            NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ
Sbjct: 1235 NKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQ 1294

Query: 1207 DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLR 1266
            DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRK EICSIYKLR
Sbjct: 1295 DIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKLEICSIYKLR 1354

Query: 1267 IDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKG 1326
            IDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKINGIKNFVPDSQSK 
Sbjct: 1355 IDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKINGIKNFVPDSQSKV 1414

Query: 1327 SSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAK 1386
            SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMDYEDDSEDDLNAK
Sbjct: 1415 SSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMDYEDDSEDDLNAK 1474

Query: 1387 ESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKV 1446
            E STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKEKTTETS++KKKV
Sbjct: 1475 EPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKEKTTETSEKKKKV 1534

Query: 1447 KSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQ 1506
            KSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVSIQRSGKIIQCQQ
Sbjct: 1535 KSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVSIQRSGKIIQCQQ 1594

Query: 1507 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1566
            ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH
Sbjct: 1595 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1654

Query: 1567 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1626
            AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS
Sbjct: 1655 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1714

Query: 1627 ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1715 ISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1758

BLAST of CsaV3_3G039160 vs. ExPASy TrEMBL
Match: A0A1S3B6U1 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103486799 PE=3 SV=1)

HSP 1 Score: 3154.0 bits (8176), Expect = 0.0e+00
Identity = 1596/1671 (95.51%), Postives = 1626/1671 (97.31%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV
Sbjct: 121  KTLLELILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
             +FLKPKQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  NRFLKPKQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQG+GNKAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGNGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            K EHS+IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS N
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
            ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080
            REGLVDTAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF
Sbjct: 1021 REGLVDTAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVDVHKTAF 1080

Query: 1081 ITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVLKED 1140
            ITKFEALAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPGLV+KED
Sbjct: 1081 ITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPGLVVKED 1140

Query: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200
            FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI
Sbjct: 1141 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1200

Query: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREIC 1260
            LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRK EIC
Sbjct: 1201 LMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKLEIC 1260

Query: 1261 SIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVP 1320
            SIYKLRIDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKINGIK   P
Sbjct: 1261 SIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKINGIKILFP 1320

Query: 1321 DSQSKGSSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMDYEDDSE 1380
               ++ SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMDYEDDSE
Sbjct: 1321 -IHNQRSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMDYEDDSE 1380

Query: 1381 DDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETS 1440
            DDLNAKE STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKEKTTETS
Sbjct: 1381 DDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKEKTTETS 1440

Query: 1441 KEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGK 1500
            ++KKKVKSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVSIQRSGK
Sbjct: 1441 EKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVSIQRSGK 1500

Query: 1501 IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI 1560
            IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI
Sbjct: 1501 IIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYI 1560

Query: 1561 YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL 1620
            YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL
Sbjct: 1561 YSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRL 1620

Query: 1621 GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1671
            GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT
Sbjct: 1621 GGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGT 1669

BLAST of CsaV3_3G039160 vs. ExPASy TrEMBL
Match: A0A5D3DP64 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005770 PE=3 SV=1)

HSP 1 Score: 3113.2 bits (8070), Expect = 0.0e+00
Identity = 1592/1737 (91.65%), Postives = 1620/1737 (93.26%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESVKVVTFSFMTN EVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFV LHNFLRCTCFSCHHFRAGE MVE C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
            KTLLELILDGE+AKAKELE+EW++S SRTKSSH+MYTYERKN QP+TWTSLQFSEA+SVV
Sbjct: 121  KTLLELILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
             +FLKPKQSNCKYCGAK+PKITKPTFGW H KGL G  KRANAIRRSKPVSVSSGAEGVS
Sbjct: 181  NRFLKPKQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SLEEETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300
            SLEEETTTEATVED EDVSPE+FMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS
Sbjct: 241  SLEEETTTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDIS 300

Query: 301  QQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHAN 360
            QQG+GNKAGHSMFFLESVLVPPIKFRPPAKGGDS+MEHPQTVLLNKVLQSNISLGNGHAN
Sbjct: 301  QQGNGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNGHAN 360

Query: 361  KSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVN 420
            K EHS+IVRLWMDLQQSINILFDSK+AAGPGK DASLGICQLLEKKEGMFRQKMMGKRVN
Sbjct: 361  KLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKEGMFRQKMMGKRVN 420

Query: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480
            FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI
Sbjct: 421  FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI 480

Query: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540
            DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR
Sbjct: 481  DKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNR 540

Query: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600
            QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV
Sbjct: 541  QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 600

Query: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660
            NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE
Sbjct: 601  NANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSE 660

Query: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRG 720
            KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF VEKDVKIPRG
Sbjct: 661  KPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFCVEKDVKIPRG 720

Query: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAARL 780
            FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKE+ KVDKLKAARL
Sbjct: 721  FFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEYAKVDKLKAARL 780

Query: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQTHGF 840
            DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAGLLLSVMSRLFTVFLQTHGF
Sbjct: 781  DDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVMSRLFTVFLQTHGF 840

Query: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTLQLNIEKTISYN 900
            TCGVDDLLLIECMDKEREKQLQICEKIGEQVHL FLKVKDGEKLDPMTLQLNIEKTIS N
Sbjct: 841  TCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPMTLQLNIEKTISNN 900

Query: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKGGTANFQQ 960
            GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKG       
Sbjct: 901  GEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSGAKG------- 960

Query: 961  ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020
                 GQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG
Sbjct: 961  -----GQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1020

Query: 1021 REG--------------------------------------------------------- 1080
            REG                                                         
Sbjct: 1021 REGSGTVLWGAVRRMLCTWSVILFAKQRGIWGKIAAFLPPVLHVLGKGSSFPFKASKWPD 1080

Query: 1081 ---------LVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGEDGVD 1140
                     LVDTAVKTSRSGYLQRCLIKNLE+LKICYDHTVRDADGSVIQFQYGEDGVD
Sbjct: 1081 GREIPLPGRLVDTAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQYGEDGVD 1140

Query: 1141 VHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNSLSKDKVPG 1200
            VHKTAFITKFEALAANQDMLY+ SHHQLGKYNVFINELPSALREK EFIYNSLSKDKVPG
Sbjct: 1141 VHKTAFITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSLSKDKVPG 1200

Query: 1201 LVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI 1260
            LV+KEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI
Sbjct: 1201 LVVKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGI 1260

Query: 1261 PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ 1320
            PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ
Sbjct: 1261 PRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQ 1320

Query: 1321 RKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKING 1380
            RK EICSIYKLRIDFYPL+NNAQHGHISPEDLENTLE VFLEELE LIEREMVLLSKING
Sbjct: 1321 RKLEICSIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMVLLSKING 1380

Query: 1381 IKNFVPDSQSKGSSEGDEVSSSRQEENDDDDDE-GNDLDVAEDLGSDMKKQKLQANDEMD 1440
            IKNFVPDSQSK SSEGDEVS S+QEE DDDDD+ GNDLDVAEDLGSDMKKQKLQA DEMD
Sbjct: 1381 IKNFVPDSQSKVSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKLQATDEMD 1440

Query: 1441 YEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKE 1500
            YEDDSEDDLNAKE STGFESEVDQGDEAEITNN+ IEIVKDSASEN+PEIVD+SKS SKE
Sbjct: 1441 YEDDSEDDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDISKSESKE 1500

Query: 1501 KTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVS 1560
            KTTETS++KKKVKSE  RK+TDRSIF EAKENHFEVHFKFTNEPH LLSQI QRAAQKVS
Sbjct: 1501 KTTETSEKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQRAAQKVS 1560

Query: 1561 IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE 1620
            IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE
Sbjct: 1561 IQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDE 1620

Query: 1621 LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY 1671
            LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY
Sbjct: 1621 LDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGY 1680

BLAST of CsaV3_3G039160 vs. ExPASy TrEMBL
Match: A0A6J1DJ24 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111021540 PE=3 SV=1)

HSP 1 Score: 2861.6 bits (7417), Expect = 0.0e+00
Identity = 1438/1690 (85.09%), Postives = 1539/1690 (91.07%), Query Frame = 0

Query: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60
            MAQTTEGASESV+ V FSFMT+EEVRK S VKVTAPILLDGMGRPVSGGLYDPAMGSLD+
Sbjct: 1    MAQTTEGASESVEAVAFSFMTDEEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDD 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120
            TTLCKSCGQRP YCPGHCGHIDLVSPVYNPLLFVILHN L+ TCFSCHHFRAGES VE C
Sbjct: 61   TTLCKSCGQRPLYCPGHCGHIDLVSPVYNPLLFVILHNILQRTCFSCHHFRAGESQVEKC 120

Query: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180
             + L+LI +G++ +AKEL+ EW+     ++ SHS Y+  R+N QP  WTSLQFSEAISVV
Sbjct: 121  VSQLDLISNGDVVEAKELDSEWL-----SEPSHSKYSNGRQNMQPGKWTSLQFSEAISVV 180

Query: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240
             KFLKPKQ  CK CGAK+PKI++PTFGW +M GL G  KRANAIR  KPVSV SGAEG+S
Sbjct: 181  NKFLKPKQRECKNCGAKNPKISRPTFGWLNMSGLPGAHKRANAIRGCKPVSVISGAEGIS 240

Query: 241  SLEEETT-------------------TEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDI 300
            SLEEETT                   T+A  ED E+V PEVFMQKNFSSGHL+PSEVK I
Sbjct: 241  SLEEETTFSHTTVINTSEGDAFDDTATKAPTEDSEEVPPEVFMQKNFSSGHLMPSEVKVI 300

Query: 301  LKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQT 360
            +++LWKNEA LCSFISDI  QGHG KAGHSMFFLE+VL+PPIKFRPPAKGGDSVMEHPQT
Sbjct: 301  MRQLWKNEATLCSFISDIQHQGHGKKAGHSMFFLENVLIPPIKFRPPAKGGDSVMEHPQT 360

Query: 361  VLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQ 420
            VLLNKVLQSNISLGN HANKSEHSKIVRLWMDLQQS+N+LFDSK+AA  G+ D S+GICQ
Sbjct: 361  VLLNKVLQSNISLGNAHANKSEHSKIVRLWMDLQQSVNVLFDSKTAA--GQKDISVGICQ 420

Query: 421  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 480
            LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YPERVTAWNVQK
Sbjct: 421  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTAWNVQK 480

Query: 481  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEF 540
            LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG  DYEF
Sbjct: 481  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSGDYEF 540

Query: 541  EGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 600
            EGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE
Sbjct: 541  EGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 600

Query: 601  MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEF 660
            MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEF
Sbjct: 601  MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEF 660

Query: 661  SQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDH 720
            SQLLYSSGISTS+ CASSEKPGQK+FTLDF+AEMLPVLPA+WKPEPLWTGKQVVTALL+H
Sbjct: 661  SQLLYSSGISTSRPCASSEKPGQKVFTLDFEAEMLPVLPAIWKPEPLWTGKQVVTALLEH 720

Query: 721  ITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDE 780
            IT+GSPPF VEKDVKIPRGFFKCR  GNNSSKVK+VDGDKSKRKRT NEN+L K EV DE
Sbjct: 721  ITRGSPPFCVEKDVKIPRGFFKCRHTGNNSSKVKVVDGDKSKRKRTWNENRLGKSEVPDE 780

Query: 781  GNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAG 840
            GNSKKKE++K+DKLKA  LDDDSLLIFKNELVRGVIDKAQFGDYGLVHTV ELYGSNTAG
Sbjct: 781  GNSKKKEYSKLDKLKAEHLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVHELYGSNTAG 840

Query: 841  LLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDG 900
            LLLSVMSRLFTVFLQ HGFTCGVDDLLL+ECMDKERE+QLQICEKIGEQVHLGFLKVKDG
Sbjct: 841  LLLSVMSRLFTVFLQMHGFTCGVDDLLLLECMDKEREEQLQICEKIGEQVHLGFLKVKDG 900

Query: 901  EKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN 960
            EKLDPMTLQLNIEKTI  NGE ALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN
Sbjct: 901  EKLDPMTLQLNIEKTICDNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN 960

Query: 961  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV 1020
            CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFP WDWASRAGGFIV
Sbjct: 961  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPSWDWASRAGGFIV 1020

Query: 1021 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADG 1080
            DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN+ESLKICYDHTVRDADG
Sbjct: 1021 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNMESLKICYDHTVRDADG 1080

Query: 1081 SVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGE 1140
            S+IQFQYGEDG+DVHKTAFITKFEAL AN+DMLY+ SHHQLGKYN++INELPSAL+EK E
Sbjct: 1081 SIIQFQYGEDGIDVHKTAFITKFEALVANRDMLYQKSHHQLGKYNIYINELPSALQEKAE 1140

Query: 1141 FIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH 1200
             IYNS SKDK PGLV K+DF RLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH
Sbjct: 1141 VIYNSFSKDKAPGLVQKDDFFRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH 1200

Query: 1201 HAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADI 1260
            HAGRGEMNVTLGIPRLQEILMTAS DIKTPIMTCPL++GYSMD AK LANKLKKITVADI
Sbjct: 1201 HAGRGEMNVTLGIPRLQEILMTASHDIKTPIMTCPLRDGYSMDYAKCLANKLKKITVADI 1260

Query: 1261 IESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGL 1320
            IESM VTVVPFS RKREICSIYKL I FYPLENN QHGH+S EDLE  LE VF+ ELE  
Sbjct: 1261 IESMEVTVVPFSVRKREICSIYKLEIKFYPLENNPQHGHVSSEDLEEILEFVFVRELEDS 1320

Query: 1321 IEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDM 1380
            I+ EM+LLS+INGIKNFVPDSQS+GSSE DEVSSS+ EENDDDD+ GND+D AEDLG DM
Sbjct: 1321 IQNEMILLSRINGIKNFVPDSQSQGSSERDEVSSSQHEENDDDDNVGNDVDAAEDLGFDM 1380

Query: 1381 KKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQP 1440
            KKQKL+A DEMDYEDDS+++LNAK  S GFESEVDQGDE EITN+D+++I KDS SENQ 
Sbjct: 1381 KKQKLRATDEMDYEDDSDEELNAKAPSAGFESEVDQGDEVEITNDDIMDIAKDSTSENQT 1440

Query: 1441 EIVDVSKSMSKEKTTET-SKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTL 1500
            EI DVSKS  K KT +T +K+KK+ K E  RK+ DR+IFV AK NHFEVHFKF NEPH L
Sbjct: 1441 EITDVSKSNLKGKTPKTANKKKKRAKLEFSRKDYDRAIFVAAKGNHFEVHFKFANEPHIL 1500

Query: 1501 LSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTS 1560
            L+Q+ Q+ AQKVSIQ SGKII+CQQITCKEGQVIYHGNN+KERK +K EEKEKIPA+QT+
Sbjct: 1501 LTQVAQKTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNNVKERKKMKLEEKEKIPAVQTT 1560

Query: 1561 GVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHL 1620
            GVDF+ LWE+QDELDVRYIYSNDIHAML+TYGVEAAR T++REIQNIF+SYGISVNIRHL
Sbjct: 1561 GVDFRMLWELQDELDVRYIYSNDIHAMLETYGVEAARETVMREIQNIFSSYGISVNIRHL 1620

Query: 1621 SLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRI 1671
            +LVADYMTHSGGYRPMSRLGGI++SISPFSRMTFETA KFIVQAA HGE+DNLETPS+RI
Sbjct: 1621 TLVADYMTHSGGYRPMSRLGGIAESISPFSRMTFETASKFIVQAAFHGEIDNLETPSARI 1680

BLAST of CsaV3_3G039160 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 1805.0 bits (4674), Expect = 0.0e+00
Identity = 965/1686 (57.24%), Postives = 1206/1686 (71.53%), Query Frame = 0

Query: 7    GASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 66
            GAS+ V+ V FSFMT ++VRK S +KVT+PIL D +G P  GGLYD  +G  D+   C S
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLEL 126
            CGQ    CPGHCGHI+LV P+Y+PLLF +L NFL+  CF CHHF A    VE   + L+L
Sbjct: 82   CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 127  ILDGEIAKAKELEEEW-MNSKSRTKSSHSMYT------YERKNGQPETWTSLQFSEAISV 186
            I+ G+I  AK+LE      SKS  +S  S+ T       E  + + + WTSLQF+E  +V
Sbjct: 142  IIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAV 201

Query: 187  VTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAE-- 246
            +  F++    +C  C   +PK+ KP FGW  M+ +      AN IR  K    +S  E  
Sbjct: 202  LKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENP 261

Query: 247  ------GVSSLEE-ETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEA 306
                  G+ +L E E   + T E   +V+ E   +++ S   LLPSEV++ILK LW+NE 
Sbjct: 262  DGFDDSGIDALSEVEDGDKETREKSTEVAAE--FEEHNSKRDLLPSEVRNILKHLWQNEH 321

Query: 307  LLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQS 366
              CSFI D+ Q G   K  +SMFFLESVLVPP KFRPP  GGDSVMEHPQTV LNKV++S
Sbjct: 322  EFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIES 381

Query: 367  NISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQLLEKKEGMF 426
            N  LGN   NK + SK++  W +LQ+S+N+LFDSK+A    + D+S GICQLLEKKEG+F
Sbjct: 382  NNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATVQSQRDSS-GICQLLEKKEGLF 441

Query: 427  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGP 486
            RQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVT WNV+KLR AIINGP
Sbjct: 442  RQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGP 501

Query: 487  ETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG-CDDYEFEGKIVNRH 546
            + HPGATHY DK +T+K  L  + K+R +I+RKL SSRG   + G   D  FEGK V+RH
Sbjct: 502  DIHPGATHYSDKSSTMK--LPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRH 561

Query: 547  LQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQD 606
            ++DGDIVLVNRQPTLHKPS+MAH VRVLKGEKT+R+HYANCSTYNADFDGDEMNVHFPQD
Sbjct: 562  MRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQD 621

Query: 607  EISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSG 666
            EISRAEAYNIVNANNQY +P++GEP+RALIQDHI+S+VLLTK+DTFL+ D F+QLL+SSG
Sbjct: 622  EISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSG 681

Query: 667  ISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPF 726
            ++       S + G+K+     DAE+L V PA+ KP PLWTGKQV+TA+L+ IT+G PPF
Sbjct: 682  VTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPF 741

Query: 727  FVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEH 786
             VEK  K+P  FFKCR     S +VK   GD +K+K                        
Sbjct: 742  TVEKATKLPVDFFKCR-----SREVKPNSGDLTKKK------------------------ 801

Query: 787  TKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSR 846
             ++D+     L++D L I KNE V GVIDKAQF DYGLVHTV ELYGSN AG LLSV SR
Sbjct: 802  -EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSR 861

Query: 847  LFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMTL 906
            LFTVFLQTHGFTCGVDDL++++ MD+ER KQLQ CE +GE+V      +    ++DP  +
Sbjct: 862  LFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDM 921

Query: 907  QLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTS 966
            +  IE+ +  +GE+AL SLDR + + LN+   +  V+ DLLS+GLLK   +NCISLMT S
Sbjct: 922  RSRIERILYEDGESALASLDRSIVNYLNQ-CSSKGVMNDLLSDGLLKTPGRNCISLMTIS 981

Query: 967  GAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLR 1026
            GAKG   NFQQISSHLGQQ LEGKRVPRMVSGKTLPCF PWDW+ RAGGFI DRFL+GLR
Sbjct: 982  GAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLR 1041

Query: 1027 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYG 1086
            PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLK+ YD TVRDADGS+IQFQYG
Sbjct: 1042 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYG 1101

Query: 1087 EDGVDVHKTAFITKFEALAANQDMLYEN-SHHQLGKYNVFINELPSALREKGEFIYNSLS 1146
            EDGVDVH+++FI KF+ L  NQDM+ +  S   L   + +I++LP +L++  E    ++ 
Sbjct: 1102 EDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMP 1161

Query: 1147 KDK--VPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1206
             ++      V +E+ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMTLNTFH AGRG
Sbjct: 1162 MNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRG 1221

Query: 1207 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMN 1266
            EMNVTLGIPRLQEILMTA+ +IKTPIMTCPL +G + + A  + ++L+KITVADII+SM 
Sbjct: 1222 EMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSME 1281

Query: 1267 VTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREM 1326
            ++VVP++  + E+CSI+KL+I+ Y  E+  +H  I+ ED E T+  VFL +LE  IE  M
Sbjct: 1282 LSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHM 1341

Query: 1327 VLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQEEND-DDDDEGNDLDVAEDLGSDMKKQK 1386
             +L +I GI N V    +   ++ D+  S +Q E+D DDD EG ++D   DLGSD +KQK
Sbjct: 1342 KMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD---DLGSDAQKQK 1401

Query: 1387 LQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVD 1446
             Q  DEMDYE++SED+ N   S +G E      D    + N+  E+ K+   E Q E ++
Sbjct: 1402 KQETDEMDYEENSEDETNEPSSISGVE------DPEMDSENEDTEVSKEDTPEPQEESME 1461

Query: 1447 VSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKF-TNEPHTLLSQI 1506
              K +   K  +   +KK+ K   VR ++DR IFV+ +   FEVHFKF T++PH LL+QI
Sbjct: 1462 PQKEVKGVKNVKEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFATDDPHILLAQI 1521

Query: 1507 VQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDF 1566
             Q+ AQKV IQ SGKI +C    C + QVIYHG+N KER+ +  +EK+  PAL  SGVDF
Sbjct: 1522 AQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDF 1581

Query: 1567 KTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVA 1626
              LWE QD+LDVRY+YSN IH ML  +GVEAAR TIIREI ++F SYGISV+IRHL+L+A
Sbjct: 1582 PALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIA 1641

Query: 1627 DYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGL 1671
            DYMT SGGYRPMSR+GGI++S SPF RMTFETA KFIVQAA +GE D LETPS+RICLGL
Sbjct: 1642 DYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGL 1659

BLAST of CsaV3_3G039160 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 467.2 bits (1201), Expect = 5.6e-131
Identity = 455/1718 (26.48%), Postives = 718/1718 (41.79%), Query Frame = 0

Query: 12   VKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRP 71
            +K + FS +++ EV K + V+V    L D   +P   GL DP MG  ++ ++C +C    
Sbjct: 23   IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82

Query: 72   FYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVEN-----CKTLLEL 131
              CPGH G++ L  PVYN   F  + + L+C C  C +    E + E+         +E 
Sbjct: 83   QNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLYEDHLRKMRNPRMEP 142

Query: 132  ILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKP 191
            +   E+AKA       +  K  T +S  + T                             
Sbjct: 143  LKKTELAKA-------VVKKCSTMASQRIIT----------------------------- 202

Query: 192  KQSNCKYCGAKSPKITK--PTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEE 251
                CK CG  +  + K    FG        G+    + I   +   +      +S  ++
Sbjct: 203  ----CKKCGYLNGMVKKIAAQFG-------IGISHDRSKIHGGE---IDECKSAISHTKQ 262

Query: 252  ETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGH 311
             T           ++P  ++        L P+ V  + KR+   +  L  +I+   +   
Sbjct: 263  STAA---------INPLTYV--------LDPNLVLGLFKRMSDKDCELL-YIAYRPEN-- 322

Query: 312  GNKAGHSMFFLESVLVPPIKFRPPAK-GGDSVMEHPQTVLLNKVLQSNISLGNGHANKSE 371
                      +  +LVPP+  RP    GG    E+  T  L +++  N SL    +  + 
Sbjct: 323  --------LIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTS 382

Query: 372  HSKIVRLWMDLQQSINILFDS--KSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNF 431
              K +++W  +Q  +    +S  +      +     GI Q L+ K G FR  + GKRV F
Sbjct: 383  SPKNMQVWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEF 442

Query: 432  ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYID 491
              R+VISPDP L + E+GIP   A  LT+PE V+  N++KLR  + NGP  +PGA +   
Sbjct: 443  TGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNV-- 502

Query: 492  KLATVKLNLKPSRKSRISISRKLPSSRGVVVDQ---GCDDYEFEGKIVNRHLQDGDIVLV 551
                      P   SR  +       R  + D+   GC        IV+RHLQ+GD+VL 
Sbjct: 503  --------RYPDGSSRTLVG----DYRKRIADELAIGC--------IVDRHLQEGDVVLF 562

Query: 552  NRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYN 611
            NRQP+LH+ SIM H  R++   +T+R + + C+ YNADFDGDEMN+H PQ E +R EA  
Sbjct: 563  NRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAIT 622

Query: 612  IVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACAS 671
            ++   N    P +GE + A  QD + S+ L+T+KDTF +   FS +    G         
Sbjct: 623  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDG------- 682

Query: 672  SEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIP 731
                         D+  LP  P + KP  LWTGKQ+ + LL                   
Sbjct: 683  ------------MDSIDLPT-PTILKPIELWTGKQIFSVLL------------------- 742

Query: 732  RGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAA 791
                      N S +V +          T+N         + E N KK EH         
Sbjct: 743  --------RPNASIRVYV----------TLN---------VKEKNFKKGEH----GFDET 802

Query: 792  RLDDDSLLIFKN-ELVRGVIDKAQFGD---YGLVHTVQELYGSNTAGLLLSVMSRLFTVF 851
               +D  + F+N EL+ G + KA  G+    GL   +   Y S+ A + ++ +++L   +
Sbjct: 803  MCINDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARW 862

Query: 852  LQTHGFTCGVDDLLLIECMDKEREKQLQI----CEKIGEQVHLGFLKVKDGEKLDPMTLQ 911
            +  HGF+ G+DD+   E + KER+  +Q     C +  E+ + G L++K G         
Sbjct: 863  IGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG--------- 922

Query: 912  LNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSG 971
            L+  K++    EA +T +     + + E TG +         GL     +N   +M+  G
Sbjct: 923  LDGAKSL----EAEITGI----LNTIREATGKA------CMSGL---HWRNSPLIMSQCG 982

Query: 972  AKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRP 1031
            +KG   N  Q+ + +GQQ + G R P     ++LP FP    +  A GF+ + F +GL  
Sbjct: 983  SKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTA 1042

Query: 1032 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGE 1091
             E++FH M GREGLVDTAVKT+ +GY+ R L+K LE L + YD+TVR+A G ++QF YG+
Sbjct: 1043 TEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGD 1102

Query: 1092 DGVDVHKTAFITKFEALAANQDMLY--------ENSHH-----------------QLGKY 1151
            DG+D    A +   +    N + L+          SHH                 +  K 
Sbjct: 1103 DGMD---PALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELVRHDKS 1162

Query: 1152 NVFINELPSALREKGEFIYNSLSKDKVPGLVL----------KEDFIRLLENKYLSSLAQ 1211
             V  +    +LR   EF+     K   P  VL           E F+++   +Y     +
Sbjct: 1163 RVCTDAFVKSLR---EFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFRYREKKIE 1222

Query: 1212 PGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTC 1271
             G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI+  AS++I TP+++ 
Sbjct: 1223 AGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKNISTPVISA 1282

Query: 1272 PLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENN 1331
             L+    +  A+ +  +++K T+  + ES+ V +   S   R I                
Sbjct: 1283 ELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRII---------------- 1342

Query: 1332 AQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSS 1391
                                  L+  I  E  L      +KN                  
Sbjct: 1343 ----------------------LDNKIIEEACLSITPWSVKN------------------ 1352

Query: 1392 SRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESEV 1451
                                   S +K  +++ ND                         
Sbjct: 1403 -----------------------SILKTPRIKLND------------------------- 1352

Query: 1452 DQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETD 1511
                      ND+   V D+  +  P +VD S++                          
Sbjct: 1463 ----------NDI--RVLDTGLDITP-VVDKSRA-------------------------- 1352

Query: 1512 RSIFVEAKENHFEVHFKFTNEPHTLLSQI--VQRAAQKVSIQRSGKIIQCQQITCK-EGQ 1571
                      HF +H      P+ +++ I  V+R      + +S      +QI  K + +
Sbjct: 1523 ----------HFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKS------KQIDGKTKWK 1352

Query: 1572 VIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYG 1631
            +   G NL             +  + T G++ +T              SN++  + +T G
Sbjct: 1583 LFVEGTNL-------------LAVMGTPGINGRT------------TTSNNVVEVSKTLG 1352

Query: 1632 VEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRM 1671
            +EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G    + R G      S   + 
Sbjct: 1643 IEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQA 1352

BLAST of CsaV3_3G039160 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 453.4 bits (1165), Expect = 8.4e-127
Identity = 452/1725 (26.20%), Postives = 709/1725 (41.10%), Query Frame = 0

Query: 12   VKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRP 71
            +K + FS +++ EV K + V+V    L D   +P   GL DP MG  ++ ++C +C    
Sbjct: 23   IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82

Query: 72   FYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENCKTLLELILDGE 131
              CPGH G++ L  PVYN   F  + + L+C C                           
Sbjct: 83   QNCPGHYGYLKLDLPVYNVGYFNFILDILKCIC--------------------------- 142

Query: 132  IAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQS-- 191
              K  EL +      S       +Y    +  +      L+ +E    V K      S  
Sbjct: 143  --KVTELADYVSLRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQR 202

Query: 192  --NCKYCGAKSPKITK--PTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEE 251
               CK CG  +  + K    FG        G+    + I   +   +      +S  ++ 
Sbjct: 203  IITCKKCGYLNGMVKKIAAQFG-------IGISHDRSKIHGGE---IDECKSAISHTKQS 262

Query: 252  TTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQGHG 311
            T           ++P  ++        L P+ V  + KR+   +  L  +I+   +    
Sbjct: 263  TAA---------INPLTYV--------LDPNLVLGLFKRMSDKDCELL-YIAYRPEN--- 322

Query: 312  NKAGHSMFFLESVLVPPIKFRPPAK-GGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEH 371
                     +  +LVPP+  RP    GG    E+  T  L +++  N SL    +  +  
Sbjct: 323  -------LIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSS 382

Query: 372  SKIVRLWMDLQQSINILFDS--KSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFA 431
             K +++W  +Q  +    +S  +      +     GI Q L+ K G FR  + GKRV F 
Sbjct: 383  PKNMQVWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFT 442

Query: 432  CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDK 491
             R+VISPDP L + E+GIP   A  LT+PE V+  N++KLR  + NGP  +PGA +    
Sbjct: 443  GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNV--- 502

Query: 492  LATVKLNLKPSRKSRISISRKLPSSRGVVVDQ---GCDDYEFEGKIVNRHLQDGDIVLVN 551
                     P   SR  +       R  + D+   GC        IV+RHLQ+GD+VL N
Sbjct: 503  -------RYPDGSSRTLVG----DYRKRIADELAIGC--------IVDRHLQEGDVVLFN 562

Query: 552  RQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNI 611
            RQP+LH+ SIM H  R++   +T+R + + C+ YNADFDGDEMN+H PQ E +R EA  +
Sbjct: 563  RQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITL 622

Query: 612  VNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASS 671
            +   N    P +GE + A  QD + S+ L+T+KDTF +   FS +    G          
Sbjct: 623  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDG-------- 682

Query: 672  EKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPR 731
                        D+  LP  P + KP  LWTGKQ+ + LL                    
Sbjct: 683  -----------MDSIDLPT-PTILKPIELWTGKQIFSVLL-------------------- 742

Query: 732  GFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLKAAR 791
                     N S +V +          T+N         + E N KK EH          
Sbjct: 743  -------RPNASIRVYV----------TLN---------VKEKNFKKGEH----GFDETM 802

Query: 792  LDDDSLLIFKN-ELVRGVIDKAQF----------GDYGLVHTVQELYGSNTAGLLLSVMS 851
              +D  + F+N EL+ G + KA               GL   +   Y S+ A + ++ ++
Sbjct: 803  CINDGWVYFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLA 862

Query: 852  RLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQI----CEKIGEQVHLGFLKVKDGEKL 911
            +L   ++  HGF+ G+DD+   E + KER+  +Q     C +  E+ + G L++K G   
Sbjct: 863  KLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG--- 922

Query: 912  DPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCIS 971
                  L+  K++    EA +T +     + + E TG +         GL     +N   
Sbjct: 923  ------LDGAKSL----EAEITGI----LNTIREATGKA------CMSGL---HWRNSPL 982

Query: 972  LMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRF 1031
            +M+  G+KG   N  Q+ + +GQQ + G R P     ++LP FP    +  A GF+ + F
Sbjct: 983  IMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSF 1042

Query: 1032 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVI 1091
             +GL   E++FH M GREGLVDTAVKT+ +GY+ R L+K LE L + YD+TVR+A G ++
Sbjct: 1043 YSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCIL 1102

Query: 1092 QFQYGEDGVDVHKTAFITKFEALAANQDMLY--------ENSHH---------------- 1151
            QF YG+DG+D    A +   +    N + L+          SHH                
Sbjct: 1103 QFTYGDDGMD---PALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEEL 1162

Query: 1152 -QLGKYNVFINELPSALREKGEFIYNSLSKDKVPGLVL----------KEDFIRLLENKY 1211
             +  K  V  +    +LR   EF+     K   P  VL           E F+++   +Y
Sbjct: 1163 VRHDKSRVCTDAFVKSLR---EFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFRY 1222

Query: 1212 LSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIK 1271
                 + G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI+  AS++I 
Sbjct: 1223 REKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKNIS 1282

Query: 1272 TPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDF 1331
            TP+++  L+    +  A+ +  +++K T+  + ES+ V +   S   R I          
Sbjct: 1283 TPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRII---------- 1342

Query: 1332 YPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSE 1391
                                        L+  I  E  L      +KN            
Sbjct: 1343 ----------------------------LDNKIIEEACLSITPWSVKN------------ 1367

Query: 1392 GDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESST 1451
                                         S +K  +++ ND                   
Sbjct: 1403 -----------------------------SILKTPRIKLND------------------- 1367

Query: 1452 GFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSEL 1511
                            ND+   V D+  +  P +VD S++                    
Sbjct: 1463 ----------------NDI--RVLDTGLDITP-VVDKSRA-------------------- 1367

Query: 1512 VRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQI--VQR--AAQKVSIQRSGKIIQCQQ 1571
                            HF +H      P+ +++ I  V+R   A+ +    +  II C +
Sbjct: 1523 ----------------HFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKMLAKLIIPCPR 1367

Query: 1572 ITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIH 1631
              C          NL             +  + T G++ +T              SN++ 
Sbjct: 1583 WAC---------TNL-------------LAVMGTPGINGRT------------TTSNNVV 1367

Query: 1632 AMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDS 1671
             + +T G+EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G    + R G     
Sbjct: 1643 EVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMD 1367

BLAST of CsaV3_3G039160 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 439.1 bits (1128), Expect = 1.6e-122
Identity = 454/1790 (25.36%), Postives = 708/1790 (39.55%), Query Frame = 0

Query: 12   VKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKSCGQRP 71
            V+VV F  ++ +E+R+ SV+ V      +  G+P  GGL D  +G++D    C++C    
Sbjct: 15   VRVVQFGILSPDEIRQMSVIHVEHSETTE-KGKPKVGGLSDTRLGTIDRKVKCETCMANM 74

Query: 72   FYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGES--------MVENCKTL 131
              CPGH G+++L  P+Y+      + + +RC CF+C    A E          ++N K  
Sbjct: 75   AECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQAMKIKNPKNR 134

Query: 132  LELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVVTKF 191
            L+ ILD                K++TK        + ++   +                 
Sbjct: 135  LKKILDA--------------CKNKTKCDGGDDIDDVQSHSTD----------------- 194

Query: 192  LKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVSSLE 251
             +P + +   CGA+ PK+T                                  EG+  + 
Sbjct: 195  -EPVKKSRGGCGAQQPKLT---------------------------------IEGMKMI- 254

Query: 252  EETTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG 311
             E   +    D  D  PE   +K      L    V  +LKR+   +  L  F        
Sbjct: 255  AEYKIQRKKNDEPDQLPEPAERKQ----TLGADRVLSVLKRISDADCQLLGF-------- 314

Query: 312  HGNKAGHSMFFLESVLVPPIKFRPPA-KGGDSVMEHPQTVLLNKVLQSNISLGNGHANKS 371
            +   A      LE + +PP   RP       S  E   T  L  +++ N +L     N +
Sbjct: 315  NPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGA 374

Query: 372  EHSKIVRLWMDLQQSINILFDSKSAAGPGKNDAS----LGICQLLEKKEGMFRQKMMGKR 431
                I      LQ  I   FD++    P     S      IC  L+ KEG  R  +MGKR
Sbjct: 375  PAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKR 434

Query: 432  VNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGAT- 491
            V+F+ R+VI+PDP + ++E+G+P   AL LTYPE VT +N+++L+  +  GP   PG T 
Sbjct: 435  VDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTG 494

Query: 492  -HYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIV 551
              YI +    +L+L+  +KS                    D +   G  V RHLQDGD V
Sbjct: 495  AKYIIRDDGQRLDLRYLKKS-------------------SDQHLELGYKVERHLQDGDFV 554

Query: 552  LVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA 611
            L NRQP+LHK SIM H +R++    T R++ +  S YNADFDGDEMN+H PQ   +RAE 
Sbjct: 555  LFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 614

Query: 612  YNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKAC 671
              ++      V P +  P+  ++QD ++    +TK+DTF+  D F   L           
Sbjct: 615  LELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL----------- 674

Query: 672  ASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVK 731
                     ++  DFD ++    PA+ KP PLWTGKQV   +            + K + 
Sbjct: 675  ---------MWWEDFDGKV--PAPAILKPRPLWTGKQVFNLI------------IPKQIN 734

Query: 732  IPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKKEHTKVDKLK 791
            + R      D         +  GD   R        +E+GE+L     KK   T      
Sbjct: 735  LLRYSAWHADTETGF----ITPGDTQVR--------IERGELLAGTLCKKTLGT------ 794

Query: 792  AARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMSRLFTVFLQ 851
                                       +  LVH + E  G + A   L     L   +L 
Sbjct: 795  --------------------------SNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLL 854

Query: 852  THGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKD------GEKLDPMTLQ 911
             +GFT G+ D +                EKI E +      VKD      G++LDP    
Sbjct: 855  QNGFTIGIGDTI----------ADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEP-- 914

Query: 912  LNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMTTSG 971
                      G     + + ++   LN      K   D  S      +  N +  M T+G
Sbjct: 915  ----------GRTMRDTFENRVNQVLN------KARDDAGSSAQKSLAETNNLKAMVTAG 974

Query: 972  AKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRP 1031
            +KG   N  Q+++ +GQQ +EGKR+P    G+TLP F   D+   + GF+ + +L GL P
Sbjct: 975  SKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTP 1034

Query: 1032 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQFQYGE 1091
            QE++FH M GREGL+DTAVKTS +GY+QR L+K +E + + YD TVR++ G VIQF YGE
Sbjct: 1035 QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 1094

Query: 1092 DGVD-------------VHKTAF--ITKFEALAANQDMLYENSHH--------------- 1151
            DG+D             + K+ F    K+E    N +  Y +  H               
Sbjct: 1095 DGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFD 1154

Query: 1152 -----------QLG-------------------------------------KYNVFINEL 1211
                       QLG                                      + V I + 
Sbjct: 1155 AEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDA 1214

Query: 1212 PSALREK-----------------GEFIYNSLSKDKVPGLVLKEDF----------IRLL 1271
               L+E+                     +N L +  +    + E++          I  +
Sbjct: 1215 VDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEI 1274

Query: 1272 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1331
            E+++L SL  PGE +G +AAQSIGEP+TQMTLNTFH+AG    NVTLG+PRL+EI+  A 
Sbjct: 1275 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1334

Query: 1332 QDIKTPIMTCPL--KEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIY 1391
            + IKTP ++  L  +   S + AK +   L+  T+  + ++  V   P       + +I 
Sbjct: 1335 R-IKTPSLSVYLTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDP-----DPMSTII 1394

Query: 1392 KLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQ 1451
            +   +F           +SP+ +   L  + L        REM++  K+           
Sbjct: 1395 EEDFEFVRSYYEMPDEDVSPDKISPWLLRIEL-------NREMMVDKKL----------- 1454

Query: 1452 SKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSE---D 1511
                                     +  D+AE +              ++++DD     +
Sbjct: 1455 -------------------------SMADIAEKI-------------NLEFDDDLTCIFN 1459

Query: 1512 DLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSK 1571
            D NA++         D+G + E+         +D ++E+   +  +  +M  E       
Sbjct: 1515 DDNAQKLILRIRIMNDEGPKGEL---------QDESAEDDVFLKKIESNMLTEMALRGIP 1459

Query: 1572 EKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKI 1631
            +  KV  + VRK                                                
Sbjct: 1575 DINKVFIKQVRK------------------------------------------------ 1459

Query: 1632 IQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIY 1671
                             +   E    K  E+     L T GV+   +    +++D +   
Sbjct: 1635 -----------------SRFDEEGGFKTSEEW---MLDTEGVNLLAVM-CHEDVDPKRTT 1459

BLAST of CsaV3_3G039160 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-26
Identity = 113/404 (27.97%), Postives = 181/404 (44.80%), Query Frame = 0

Query: 273 LLPSEVKDILKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFR-PPAKG 332
           LL  EVK+IL+R+ +      +    I Q+G         + LE + VPP     P A  
Sbjct: 175 LLAREVKEILRRIPEESRKKLTAKGHIPQEG---------YILEYLPVPPNCLSVPEASD 234

Query: 333 GDSVME-HPQTVLLNKVLQSNISLGNGH----------ANKSEHSKIVRLWMDLQQSINI 392
           G S M   P  + L  VL+  I++ +            A  SE  ++V  ++ ++ +   
Sbjct: 235 GFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKA 294

Query: 393 LFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGI 452
             +     G  K   S       EK   +F +K  G    F+ RSVI+ D Y  VNE+GI
Sbjct: 295 ARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSG----FSSRSVITGDAYRHVNEVGI 354

Query: 453 PPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISI 512
           P   A R+T+ ERV+  N                    Y+ KL   KL L  ++ S    
Sbjct: 355 PIEIAQRITFEERVSVHN------------------RGYLQKLVDDKLCLSYTQGSTTYS 414

Query: 513 SRKLPSSRGVVVDQGCDDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE 572
            R    S+G    +        G++V+R + DGD+V +NR PT HK S+ A  V V + +
Sbjct: 415 LR--DGSKGHTELK-------PGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-D 474

Query: 573 KTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQ 632
            T++++   CS  +ADFDGD +++ +PQ   ++AE   + +   Q +   +G+ I  +  
Sbjct: 475 NTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGS 534

Query: 633 DHIISAVLLTKKDTFLNFDEFSQL-LYSSGISTSKACASSEKPG 664
           D ++S  ++ ++  FL+     QL +Y S      A   S K G
Sbjct: 535 DSLLSLRVMLER-VFLDKATAQQLAMYGSLSLPPPALRKSSKSG 536