CsaV3_3G039020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32066769 .. 32068100 (+)
RNA-Seq Expression	CsaV3_3G039020
Synteny	CsaV3_3G039020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTGTGAGCTCCAATGGTGGTCCTTCACACGCTTCATTTGGGTCCCTCCACCTTCCATACTAAATACTCTACTCCACACCACAACCCCTTCTAACCATTTCTGTATATTTCTCGCAGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCTTCTTTCCTTTCCTTTTTCTCCTCGTTTTCCCTCTTTATCCTCCTCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCAGCATTTTTCTTTTCCTCAACTGGGTTTCTCTTGCCGATCATTCTTTTCTCATCATACTTGCTGTCCTCTCATCATTCGCCTTCACCCCATTTTAGGTACTCTCTCAATCTCAAATGGGTTTGCATTATCGTTTTGGTTTTCGTCTGAAATGCTTGCTTTGATTAGTTTTTTTTTCCCCATTTTGTGTATGTAATGTTTTTCTTTTGGGTTTTGTGTTGGGGATATGATTTTTGTTGTTGGTGGTGGTTTTGAACTTTAATGCCCTGTTTTTCTCTGACTCTGTTTCTTGGGAAATTTTTTGAAGATGAAATTGTATTTTGGGTTTTGTGGGTTTTGAAACTAAACCCTGACTGATGTATAGAGAGTTCTCGAAACCCAAATGGTTGTTTGGGGTATGGCGTAATTAGCATTACATACGAAGGTCTATTTTGTTTCCAGAAAATGACGAACTCACCGCTACTTTCATGGCTGTGTTTTTGTTTTTGTCCTTTATTGTGGACGATAACGTAATAACTTCAGCTTTAACCAGCATTTCTCTTTTGCATTTTTTTTTAAAAAAATTGGTGGAGTTTTTAGAAGAAAGCCCTTCTTCTTCCTTGTTTCTGATTGTTTTTCTTTTTTCTTCTTATGGAAGTACGAACTCTTCTCTGCGCATTAGTTAAACTTGTGATGTCTCTGTCTTGGAATGTTCAGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGTAATATTATTTTATGAGGTTCTAAGATCTATGTCTTTTCTTATTCCATTTGAGTTGGTGGTATTCAAAATAGCTTAGGATATGTTAGCTACTTTTGTTTTGTTTAATTTGGTGAGTTCGAAGCAGCATGTCTGTATGTGGAACTGCTAATATTTTGAGGCTTTTAAGAAACTTTGATTTAAAATTTCCATAGTTTGAGGCAATCTTTAGTCTATTCACTTATTGTAACGGCTAGCTGATTCTGTTTTAATTTATTATCTTCTTCCCTATTTTATAGGCTTCTGAGAACTATTTGACATAA

mRNA sequence

ATGGCACCTGTGAGCTCCAATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCTTCTTTCCTTTCCTTTTTCTCCTCGTTTTCCCTCTTTATCCTCCTCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCAGCATTTTTCTTTTCCTCAACTGGGTTTCTCTTGCCGATCATTCTTTTCTCATCATACTTGCTGTCCTCTCATCATTCGCCTTCACCCCATTTTAGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGAGAACTATTTGACATAA

Coding sequence (CDS)

ATGGCACCTGTGAGCTCCAATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCTTCTTTCCTTTCCTTTTTCTCCTCGTTTTCCCTCTTTATCCTCCTCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCAGCATTTTTCTTTTCCTCAACTGGGTTTCTCTTGCCGATCATTCTTTTCTCATCATACTTGCTGTCCTCTCATCATTCGCCTTCACCCCATTTTAGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGAGAACTATTTGACATAA

Protein sequence

MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPYLFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEASENYLT*

Homology

[Close]

BLAST of CsaV3_3G039020 vs. NCBI nr
Match: KGN59321.1 (hypothetical protein Csa_001994 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60
           MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY
Sbjct: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60

Query: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120
           LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA
Sbjct: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120

Query: 121 SENYLT 127
           SENYLT
Sbjct: 121 SENYLT 126

[Close]

BLAST of CsaV3_3G039020 vs. NCBI nr
Match: XP_038903928.1 (FT-interacting protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-18
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 40  FLSFFSSFSLFILLIPP-------SLPYLFGTSAFFFSSTGFLLPIILFSSYLLSSHHSP 99
           F  F S    F L+ PP       SLPYLF TS FFFSSTGFLLPIILF S    SH SP
Sbjct: 66  FPCFPSPLVPFFLVFPPYPHPPYHSLPYLFATSPFFFSSTGFLLPIILFPS-CNRSHQSP 125

Query: 100 SPHFRVLALRSETVRQELFGFLCTTFE 120
           SPHFRVLA RSETVRQELFGFLCTTFE
Sbjct: 126 SPHFRVLAFRSETVRQELFGFLCTTFE 151

[Close]

BLAST of CsaV3_3G039020 vs. ExPASy TrEMBL
Match: A0A0A0LGZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60
           MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY
Sbjct: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60

Query: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120
           LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA
Sbjct: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120

Query: 121 SENYLT 127
           SENYLT
Sbjct: 121 SENYLT 126

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59321.1	5.0e-63	100.00	hypothetical protein Csa_001994 [Cucumis sativus]	[more]
XP_038903928.1	4.9e-18	70.11	FT-interacting protein 3 isoform X1 [Benincasa hispida]	[more]

BLAST of CsaV3_3G039020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGZ7	2.4e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1	[more]

BLAST of CsaV3_3G039020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039020.1	CsaV3_3G039020.1	mRNA