
CsaV3_3G038930 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAAAGAAACGTCTTTATAAACAACTAAAAGGTAACCTTATTGCAAAAATATGAAAATCGAAATGAAAATGAGTTCCTATACTTCTTCTTCTTCTTCTTCCCTCCAAGTTTTGCCTTCACCTTCATCTTCAACCTTAAGATTAGCCATCAAATTCAAAGCCCTTTTGCAGACTCTCATTCTCTCTTTAGCTAGAGCGATCTCTCGAGCCAAAACAACGGCATTTCAATCAGCCAATACAGCTTTAAAAAGGAACAAGAAAAAGCTTTTGTATGGCTCCTTTAGACTTCACTACAATTGGTGTTCTGTTTCTTCTAATAAATATTCTCACGTGACTCCTGCGGTTCTCACTTGCGACCACGGTATCGGCGGTGGCGGAGGCGGAGGCGATCAACTTGGTGGGTATTTGCAATGGCTTGAGGAGAGAGATGTTAATAAAAAGAGTAATCATAATAGTAATGTTGAAGATGATCATGAAGATCAGAGTGTTAATGAGATTGATAAATTGGCTGAGATTTTTATTGCAAGATGTCATGAGAAATTCAAGCTTGAAAAACAAGAATCTTATAGGAGATTTCAAGACATGATGGCAAGAAGCTTTTGA ATGTCAAAGAAACGTCTTTATAAACAACTAAAAGCTAGAGCGATCTCTCGAGCCAAAACAACGGCATTTCAATCAGCCAATACAGCTTTAAAAAGGAACAAGAAAAAGCTTTTGTATGGCTCCTTTAGACTTCACTACAATTGGTGTTCTGTTTCTTCTAATAAATATTCTCACGTGACTCCTGCGGTTCTCACTTGCGACCACGGTATCGGCGGTGGCGGAGGCGGAGGCGATCAACTTGGTGGGTATTTGCAATGGCTTGAGGAGAGAGATGTTAATAAAAAGAGTAATCATAATAGTAATGTTGAAGATGATCATGAAGATCAGAGTGTTAATGAGATTGATAAATTGGCTGAGATTTTTATTGCAAGATGTCATGAGAAATTCAAGCTTGAAAAACAAGAATCTTATAGGAGATTTCAAGACATGATGGCAAGAAGCTTTTGA ATGTCAAAGAAACGTCTTTATAAACAACTAAAAGCTAGAGCGATCTCTCGAGCCAAAACAACGGCATTTCAATCAGCCAATACAGCTTTAAAAAGGAACAAGAAAAAGCTTTTGTATGGCTCCTTTAGACTTCACTACAATTGGTGTTCTGTTTCTTCTAATAAATATTCTCACGTGACTCCTGCGGTTCTCACTTGCGACCACGGTATCGGCGGTGGCGGAGGCGGAGGCGATCAACTTGGTGGGTATTTGCAATGGCTTGAGGAGAGAGATGTTAATAAAAAGAGTAATCATAATAGTAATGTTGAAGATGATCATGAAGATCAGAGTGTTAATGAGATTGATAAATTGGCTGAGATTTTTATTGCAAGATGTCATGAGAAATTCAAGCTTGAAAAACAAGAATCTTATAGGAGATTTCAAGACATGATGGCAAGAAGCTTTTGA MSKKRLYKQLKARAISRAKTTAFQSANTALKRNKKKLLYGSFRLHYNWCSVSSNKYSHVTPAVLTCDHGIGGGGGGGDQLGGYLQWLEERDVNKKSNHNSNVEDDHEDQSVNEIDKLAEIFIARCHEKFKLEKQESYRRFQDMMARSF* Homology
BLAST of CsaV3_3G038930 vs. NCBI nr
Match: KGN59451.2 (hypothetical protein Csa_001296 [Cucumis sativus]) HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. NCBI nr
Match: XP_031739057.1 (uncharacterized protein LOC116402823 [Cucumis sativus]) HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. NCBI nr
Match: XP_008443602.1 (PREDICTED: uncharacterized protein LOC103487158 [Cucumis melo] >KAA0043723.1 uncharacterized protein E6C27_scaffold236G00520 [Cucumis melo var. makuwa]) HSP 1 Score: 232.3 bits (591), Expect = 2.8e-57 Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. NCBI nr
Match: TYK25410.1 (uncharacterized protein E5676_scaffold352G005520 [Cucumis melo var. makuwa]) HSP 1 Score: 211.1 bits (536), Expect = 6.7e-51 Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. NCBI nr
Match: XP_038906153.1 (uncharacterized protein LOC120092033 [Benincasa hispida]) HSP 1 Score: 179.5 bits (454), Expect = 2.2e-41 Identity = 103/142 (72.54%), Postives = 111/142 (78.17%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. ExPASy TrEMBL
Match: A0A0A0LBV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809400 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 6.3e-71 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. ExPASy TrEMBL
Match: A0A5A7TJT8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00520 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57 Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. ExPASy TrEMBL
Match: A0A1S3B8H1 (uncharacterized protein LOC103487158 OS=Cucumis melo OX=3656 GN=LOC103487158 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 1.4e-57 Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. ExPASy TrEMBL
Match: A0A5D3DQ67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005520 PE=4 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51 Identity = 113/129 (87.60%), Postives = 117/129 (90.70%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. ExPASy TrEMBL
Match: A0A6J1J6X1 (uncharacterized protein LOC111481779 OS=Cucurbita maxima OX=3661 GN=LOC111481779 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 8.6e-28 Identity = 85/144 (59.03%), Postives = 95/144 (65.97%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 89.4 bits (220), Expect = 2.7e-18 Identity = 58/146 (39.73%), Postives = 78/146 (53.42%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 3.1e-14 Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 0
BLAST of CsaV3_3G038930 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11 Identity = 59/167 (35.33%), Postives = 77/167 (46.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|