CsaV3_3G038910 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G038910
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 31997104 .. 31997438 (+)
RNA-Seq Expression	CsaV3_3G038910
Synteny	CsaV3_3G038910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGTCCATCTCCTCTCTCTCTCTCCTCTTTCTGACATCGATTAACCTTTCATCCTGATTTTCTGTTTAATTAGGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

mRNA sequence

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

Coding sequence (CDS)

ATGTCGACCAACCCTCAAGGATCGGTTCCAAATAAAAACATCGGCATTTTCTTCCCCAATCTTAGCGTCAGCTGGACTTCAATGATGATGGGAATTGAATCAAGTAACGCACAATTTCAGTTTCCAACCATGTTTTTTCGCCTTCGGTCTTCAAGCGTTTTCATGCCGTCGCTCCATCGGTTATTATCAATCGCTTCGCTACCGACCCATTTTCCAGCTGCCGCGATCCACACCAGAGGCGTGGCGGCAAGATCATCCGGCTAG

Protein sequence

MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHRLLSIASLPTHFPAAAIHTRGVAARSSG*

Homology

[Close]

BLAST of CsaV3_3G038910 vs. NCBI nr
Match: KGN59311.1 (hypothetical protein Csa_000870 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60
          MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 88
          LLSIASLPTHFPAAAIHTRGVAARSSG
Sbjct: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 87

[Close]

BLAST of CsaV3_3G038910 vs. NCBI nr
Match: KAA0043725.1 (hypothetical protein E6C27_scaffold236G00540 [Cucumis melo var. makuwa] >TYK25408.1 hypothetical protein E5676_scaffold352G005500 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 22 SVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHRLLSIASLPTHFPAAAIHTRGV 81
          +V+  S MMGIESSNAQFQFPT+FFRLRSSSVFM SLHRL SIA LPTHFPAAAIHTRGV
Sbjct: 33 NVTSRSKMMGIESSNAQFQFPTVFFRLRSSSVFMASLHRLPSIALLPTHFPAAAIHTRGV 92

Query: 82 AARSSG 88
          AARSSG
Sbjct: 93 AARSSG 98

[Close]

BLAST of CsaV3_3G038910 vs. NCBI nr
Match: KAG6596233.1 (hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 31  GIESSNAQFQFPTMFFRLRSSSVFMPSLHRLLSIASLPTHFPAAAIHTRGVAAR 85
           GIESS AQFQ   M   LRSS VF+  L+RL  IA L  HFPA AIH RGV  +
Sbjct: 57  GIESSKAQFQSTAMVSGLRSSGVFVLPLNRLALIAWLVKHFPAVAIHIRGVRVK 110

[Close]

BLAST of CsaV3_3G038910 vs. ExPASy TrEMBL
Match: A0A0A0LGY9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808890 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.8e-40
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60
          MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR
Sbjct: 1  MSTNPQGSVPNKNIGIFFPNLSVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHR 60

Query: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 88
          LLSIASLPTHFPAAAIHTRGVAARSSG
Sbjct: 61 LLSIASLPTHFPAAAIHTRGVAARSSG 87

[Close]

BLAST of CsaV3_3G038910 vs. ExPASy TrEMBL
Match: A0A5D3DP90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005500 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 22 SVSWTSMMMGIESSNAQFQFPTMFFRLRSSSVFMPSLHRLLSIASLPTHFPAAAIHTRGV 81
          +V+  S MMGIESSNAQFQFPT+FFRLRSSSVFM SLHRL SIA LPTHFPAAAIHTRGV
Sbjct: 33 NVTSRSKMMGIESSNAQFQFPTVFFRLRSSSVFMASLHRLPSIALLPTHFPAAAIHTRGV 92

Query: 82 AARSSG 88
          AARSSG
Sbjct: 93 AARSSG 98

The following BLAST results are available for this feature:

BLAST of CsaV3_3G038910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59311.1	1.2e-39	100.00	hypothetical protein Csa_000870 [Cucumis sativus]	[more]
KAA0043725.1	6.1e-20	86.36	hypothetical protein E6C27_scaffold236G00540 [Cucumis melo var. makuwa] >TYK2540...	[more]
KAG6596233.1	3.6e-04	59.26	hypothetical protein SDJN03_09413, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_3G038910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G038910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGY9	5.8e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808890 PE=4 SV=1	[more]
A0A5D3DP90	3.0e-20	86.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_3G038910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G038910.1	CsaV3_3G038910.1	mRNA