CsaV3_3G038720 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G038720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Growth-regulating factor
Location	chr3: 31880190 .. 31882560 (+)
RNA-Seq Expression	CsaV3_3G038720
Synteny	CsaV3_3G038720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCATCACCCTCTCCTCTCCCTCCGTACTCTCCACTCTGCTCCTCCGATTCCCCATTCCCCCTTTACCTGCTACCTTCTCTTCCGGTTTCCCCCCCCGGTGCAACTCACAATTAAAACCATACACACACACACACACACTCCCTCACAAAAATCCCATTCCCCAAATTCTCCCCCAAGATAAGACCATCCCCCTCTAGTTACTTCTTCCTTTCCGATCACTTCCCCCGATATGCGAATCAGAAAACGCCAGCTCCCATTACCCACCTTCTCTTCTCTCTCAGATCCCCCGGTGCAACTCCCTCTCCCCTCCTCCGATCCTCCCATTAATCCCTTGGTTAGTATATTCATTTCCATCTACCTCCGATTTCTCTCTTCTCTTTTTCTTTTTCTTCAATTGCACCCCACGATTTCTTTACACTACTAACACACCGCCCACCCTCTTCTCAATTTTTTTTACATCTATCACTCATCATTCATTCATGGGGGTTATTCTCCCATTTTTCTCTACTGTAGGACAATAATCAGAAGCAGAAGCTGCTCCAACAATATGATTCCAGGTACCCATTAACTCAAATCTCCCCCCCCTCCCTATTTCTTTCTTCCTCCAACAATTAGTAAAAAAGTTTTCTTTTTTCTTTTTTCTTTTTTATTGGTATCCAATCAGAATAGAGGGGAAAAGAAAGGGGGGCAAGTGGAAATACTGTTGGGATATTTTTTTTTATATACATATATTTCATTAGTCTATTGTGCGCTCATGGGCTCTGCATGTTCTTCTTCACTATAAATGGTCCACACCCTCCCCTTTCCTCTGATCACTTACCAGTAATTAATTGTACACTTTACATATTCTTTTTGTTTTCCTTACGATTAATTGTTTTTTTTTTTTTTTTTTTTTGCATTACATGAGTACCTCAGCTATGGGTTGTGATCACTTTTTCTTTTCTCTTTGGTTTTTAGGGAAACTATTTTGATTGGTGCAGAAACAATTAATAATGCCCTTCTTCCACATTCTTCCTCTTCTTCCTCTCAAGGTTAATACCTTTCTTGTCCCTTTTAATTTAACTTACTCTTTCGCTATTTGGCTACCTACTGCACTGCACCCATTTTTCATTTTTCATTTATATTATATTCTCATTTATTCAATTATACTTTTTCTGTTGTGAGATTTTGTATGTTTAATTCATATGGAAGGTCTTGTTTTGGGCTCTTTTTCTTTTTGAACTTTGTGATTGATGGTGGGAATTATATTCTTGTTTAATTTGTTTATATATATATGTGTGTGTGTTCTTGTATTAGTTGTGCTTATGTTTGATGTAGTAGGTGGTGGGAGATGGTGCGAGAAGGAGAAGGCGTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGTCAAGTGACGAGGATAATGACGATCACAGCAAAGATAGTGATCATCAAGTTGCCACCAAGCTGCAGGATGAGAAGAAGATGATGAAGACGAAGATGAACAAGAAATGTACATTGTCACAGAAGCAATCTAAAGTGGGTCTAGACGCTGTTGTCGGGAAAAAGAGGTCAAGAGGTGGTGCGTTAATGGAGGGATCTCGGTGTAGTCGTGTCAATGGACGAGGATGGCGATGCTGCCAACAAACTCTTGTTGGTTATTCTCTCTGTGAACATCACTTGGGTAAAGGTCGTCTTCGTAGCATGAACAACGTTCGCAACCGCTCGTTGGTTGCTGCTACACCCAAGAACATCGTCGTTGTTGAGAAAGACGAGAAGAAGCCATCTCCATCTCCACCTCCATCTCCATTCCCATCATCACCACCACCTCCTTCATCATTCTCGTTGACTAGTAAGAAGAGAATGAAACTGGGTGTGGTGAAAGCAAGGTCAATGAGTAGCTTGCTCGGCCAACCCGAAGCCATGGCCGTGGCAACACCGCTGTCTCCGCCATCCACGTTGCATGATGACAACATTGACAAGTAAACTACTACATCTGTTACATAGATAACAGCTTCCTGATCTTTCCCTAAATTTTCAGTTTCTGTTCTTTCGATGGTATTTGGAAAAGTTTCTATTTAGATTGTTTTTTTTGTAAAGAGTGTTAATAGGAAAAGTTGATATTATATATCATAATTGTATTGTTTTATGTATTTGGACAATTGAACATATATATTATATATATTAATGTGTATACTACGTTTGTTTATATAGCAAATACTATGTGTGTGGATGAAGAAAATCAATTAAATTAAGCAATATTAGAAAGAGCAAAACATCCCATTTTTCTTTTTCGTTTAGAAGAATTTTCATATATATGATTAGATACGATATTATACACATGAATTAATAATGTTGATATGATATGATATGATATGTTTGTTAAT

mRNA sequence

ATGCGAATCAGAAAACGCCAGCTCCCATTACCCACCTTCTCTTCTCTCTCAGATCCCCCGGTGCAACTCCCTCTCCCCTCCTCCGATCCTCCCATTAATCCCTTGGACAATAATCAGAAGCAGAAGCTGCTCCAACAATATGATTCCAGGGAAACTATTTTGATTGGTGCAGAAACAATTAATAATGCCCTTCTTCCACATTCTTCCTCTTCTTCCTCTCAAGTAGGTGGTGGGAGATGGTGCGAGAAGGAGAAGGCGTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGTCAAGTGACGAGGATAATGACGATCACAGCAAAGATAGTGATCATCAAGTTGCCACCAAGCTGCAGGATGAGAAGAAGATGATGAAGACGAAGATGAACAAGAAATGTACATTGTCACAGAAGCAATCTAAAGTGGGTCTAGACGCTGTTGTCGGGAAAAAGAGGTCAAGAGGTGGTGCGTTAATGGAGGGATCTCGGTGTAGTCGTGTCAATGGACGAGGATGGCGATGCTGCCAACAAACTCTTGTTGGTTATTCTCTCTGTGAACATCACTTGGGTAAAGGTCGTCTTCGTAGCATGAACAACGTTCGCAACCGCTCGTTGGTTGCTGCTACACCCAAGAACATCGTCGTTGTTGAGAAAGACGAGAAGAAGCCATCTCCATCTCCACCTCCATCTCCATTCCCATCATCACCACCACCTCCTTCATCATTCTCGTTGACTAGTAAGAAGAGAATGAAACTGGGTGTGGTGAAAGCAAGGTCAATGAGTAGCTTGCTCGGCCAACCCGAAGCCATGGCCGTGGCAACACCGCTGTCTCCGCCATCCACGTTGCATGATGACAACATTGACAAGTAA

Coding sequence (CDS)

ATGCGAATCAGAAAACGCCAGCTCCCATTACCCACCTTCTCTTCTCTCTCAGATCCCCCGGTGCAACTCCCTCTCCCCTCCTCCGATCCTCCCATTAATCCCTTGGACAATAATCAGAAGCAGAAGCTGCTCCAACAATATGATTCCAGGGAAACTATTTTGATTGGTGCAGAAACAATTAATAATGCCCTTCTTCCACATTCTTCCTCTTCTTCCTCTCAAGTAGGTGGTGGGAGATGGTGCGAGAAGGAGAAGGCGTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGTCAAGTGACGAGGATAATGACGATCACAGCAAAGATAGTGATCATCAAGTTGCCACCAAGCTGCAGGATGAGAAGAAGATGATGAAGACGAAGATGAACAAGAAATGTACATTGTCACAGAAGCAATCTAAAGTGGGTCTAGACGCTGTTGTCGGGAAAAAGAGGTCAAGAGGTGGTGCGTTAATGGAGGGATCTCGGTGTAGTCGTGTCAATGGACGAGGATGGCGATGCTGCCAACAAACTCTTGTTGGTTATTCTCTCTGTGAACATCACTTGGGTAAAGGTCGTCTTCGTAGCATGAACAACGTTCGCAACCGCTCGTTGGTTGCTGCTACACCCAAGAACATCGTCGTTGTTGAGAAAGACGAGAAGAAGCCATCTCCATCTCCACCTCCATCTCCATTCCCATCATCACCACCACCTCCTTCATCATTCTCGTTGACTAGTAAGAAGAGAATGAAACTGGGTGTGGTGAAAGCAAGGTCAATGAGTAGCTTGCTCGGCCAACCCGAAGCCATGGCCGTGGCAACACCGCTGTCTCCGCCATCCACGTTGCATGATGACAACATTGACAAGTAA

Protein sequence

MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK*

Homology

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BLAST of CsaV3_3G038720 vs. NCBI nr
Match: XP_004136730.1 (uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus] >KGN59436.2 hypothetical protein Csa_001252 [Cucumis sativus])

HSP 1 Score: 557.4 bits (1435), Expect = 7.4e-155
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60
           MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI
Sbjct: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60

Query: 61  NNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120
           NNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ
Sbjct: 61  NNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120

Query: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180
           DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL
Sbjct: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180

Query: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240
           VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP
Sbjct: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240

Query: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK
Sbjct: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 290

[Close]

BLAST of CsaV3_3G038720 vs. NCBI nr
Match: XP_011652086.1 (uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 551.2 bits (1419), Expect = 5.3e-153
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60
           MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI
Sbjct: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60

Query: 61  NNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120
           NNALLPHSSSSSSQ GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ
Sbjct: 61  NNALLPHSSSSSSQ-GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120

Query: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180
           DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL
Sbjct: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180

Query: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240
           VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP
Sbjct: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240

Query: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK
Sbjct: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 289

[Close]

BLAST of CsaV3_3G038720 vs. NCBI nr
Match: XP_008443038.1 (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 484.6 bits (1246), Expect = 6.1e-133
Identity = 267/295 (90.51%), Postives = 274/295 (92.88%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120
           GAETINNALLPH SSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+KD   QV
Sbjct: 61  GAETINNALLPH-SSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDI--QV 120

Query: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180
           ATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240
           CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    PS FPS
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS----PSQFPS 240

Query: 241 SPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNIDK
Sbjct: 241 SPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNIDK 287

[Close]

BLAST of CsaV3_3G038720 vs. NCBI nr
Match: XP_008443039.1 (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131
Identity = 265/295 (89.83%), Postives = 272/295 (92.20%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120
           GAETINNALLPHSSSSS   GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+KD   QV
Sbjct: 61  GAETINNALLPHSSSSSQ--GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDI--QV 120

Query: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180
           ATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240
           CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    PS FPS
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS----PSQFPS 240

Query: 241 SPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNIDK
Sbjct: 241 SPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNIDK 286

[Close]

BLAST of CsaV3_3G038720 vs. NCBI nr
Match: XP_008443037.1 (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo] >KAA0043742.1 WRC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 479.6 bits (1233), Expect = 2.0e-131
Identity = 266/301 (88.37%), Postives = 273/301 (90.70%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSS------SQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSK 120
           GAETINNALLPHSSSSS        VGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+K
Sbjct: 61  GAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNK 120

Query: 121 DSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVN 180
           D   QVATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVN
Sbjct: 121 DI--QVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVN 180

Query: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPP 240
           GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    
Sbjct: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS---- 240

Query: 241 PSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNID 291
           PS FPSSPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNID
Sbjct: 241 PSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNID 294

[Close]

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL
Match: A0A0A0LGX5 (Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.6e-153
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60
           MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI
Sbjct: 1   MRIRKRQLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETI 60

Query: 61  NNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120
           NNALLPHSSSSSSQ GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ
Sbjct: 61  NNALLPHSSSSSSQ-GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQVATKLQ 120

Query: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180
           DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL
Sbjct: 121 DEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRCCQQTL 180

Query: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240
           VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP
Sbjct: 181 VGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPP 240

Query: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK
Sbjct: 241 SSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 289

[Close]

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL
Match: A0A1S3B760 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 3.0e-133
Identity = 267/295 (90.51%), Postives = 274/295 (92.88%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120
           GAETINNALLPH SSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+KD   QV
Sbjct: 61  GAETINNALLPH-SSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDI--QV 120

Query: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180
           ATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240
           CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    PS FPS
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS----PSQFPS 240

Query: 241 SPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNIDK
Sbjct: 241 SPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNIDK 287

[Close]

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL
Match: A0A1S3B7U9 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 5.6e-132
Identity = 265/295 (89.83%), Postives = 272/295 (92.20%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSKDSDHQV 120
           GAETINNALLPHSSSSS   GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+KD   QV
Sbjct: 61  GAETINNALLPHSSSSSQ--GGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNKDI--QV 120

Query: 121 ATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVNGRGWRC 180
           ATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVNGRGWRC
Sbjct: 121 ATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVNGRGWRC 180

Query: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPS 240
           CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    PS FPS
Sbjct: 181 CQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS----PSQFPS 240

Query: 241 SPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNIDK 291
           SPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNIDK
Sbjct: 241 SPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNIDK 286

[Close]

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL
Match: A0A5A7TKD1 (Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00710 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.5e-132
Identity = 266/301 (88.37%), Postives = 273/301 (90.70%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSS------SQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSK 120
           GAETINNALLPHSSSSS        VGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+K
Sbjct: 61  GAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNK 120

Query: 121 DSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVN 180
           D   QVATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVN
Sbjct: 121 DI--QVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVN 180

Query: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPP 240
           GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    
Sbjct: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS---- 240

Query: 241 PSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNID 291
           PS FPSSPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNID
Sbjct: 241 PSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNID 294

[Close]

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL
Match: A0A1S3B737 (Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.5e-132
Identity = 266/301 (88.37%), Postives = 273/301 (90.70%), Query Frame = 0


Query: 1   MRIRKRQLPLPTFSSLSDPPVQLPLP----SSDPPINPLD-NNQKQKLLQQYDSRETILI 60
           MRIRKRQLPLP FSSLSDPPVQL LP    SSDPPINPLD NNQKQKLLQQYDSRETILI
Sbjct: 1   MRIRKRQLPLPAFSSLSDPPVQLHLPSSSSSSDPPINPLDNNNQKQKLLQQYDSRETILI 60

Query: 61  GAETINNALLPHSSSSS------SQVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHSK 120
           GAETINNALLPHSSSSS        VGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDH+K
Sbjct: 61  GAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFPLKKRRGSFERSSDEDNDDHNK 120

Query: 121 DSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGGALMEGSRCSRVN 180
           D   QVATKLQDEKKM+KTKMNKKCTLSQKQSKVGLD VVGKKRSRGGALMEGSRCSRVN
Sbjct: 121 DI--QVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGGALMEGSRCSRVN 180

Query: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPP 240
           GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL AATPKNIVV+EKDEKKPS    
Sbjct: 181 GRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSLAAATPKNIVVIEKDEKKPS---- 240

Query: 241 PSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVATPLSPPSTLHDDNID 291
           PS FPSSPPPPSSFSLT+KKRMKLGVVKARS+SSLLGQP+ + VATPLS PSTLHDDNID
Sbjct: 241 PSQFPSSPPPPSSFSLTNKKRMKLGVVKARSISSLLGQPDGI-VATPLSLPSTLHDDNID 294

[Close]

BLAST of CsaV3_3G038720 vs. TAIR 10
Match: AT2G42040.1 (CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-23
Identity = 100/266 (37.59%), Postives = 126/266 (47.37%), Query Frame = 0


Query: 7   QLPLPTFSSLSDPPVQLPLPSSDPPINPLDNNQKQKLLQQYDSRETILIGAETINNALLP 66
           QL LP  S +SD  +Q  L      +  LD++     ++      T   G++ +N    P
Sbjct: 51  QLSLPPPSQISDRLIQRDLIKKKEEVKALDDDNGDVDVKS----RTDASGSKNVN----P 110

Query: 67  HSSS-SSSQVGGGRWCEKEKAFPLKKRRG--SFERSSDEDNDDHSKDSDHQVATKLQDEK 126
              S SS QV      + EK   L+KRRG  +FE   DE++++ S               
Sbjct: 111 RGESVSSIQVVE----KNEKVVSLRKRRGFINFEDYEDEEDEEASGGGG----------- 170

Query: 127 KMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSR--GGALMEGSRCSRVNGRGWRCCQQTLV 186
                ++NK                 GKK+++  GG L EGSRCSRVNGRGWRCCQQTLV
Sbjct: 171 -----RINK-----------------GKKKAKKSGGGLEEGSRCSRVNGRGWRCCQQTLV 230

Query: 187 GYSLCEHHLGKGRLRSMNNVRNRSLVAATPKNIVVVEKDEKKPSPSPPPSPFPSSPPPPS 246
           GYSLCEHHLGKGR+RSMN            K  VVVE                       
Sbjct: 231 GYSLCEHHLGKGRVRSMNKSGGG---RGGEKKAVVVE----------------------- 241

Query: 247 SFSLTSKKRMKLGVVKARSMSSLLGQ 268
                 KKR+KLG+VKARS+SSLLGQ
Sbjct: 291 ----VKKKRVKLGMVKARSISSLLGQ 241

[Close]

BLAST of CsaV3_3G038720 vs. TAIR 10
Match: AT5G53660.1 (growth-regulating factor 7 )

HSP 1 Score: 44.7 bits (104), Expect = 1.5e-04
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = 0


Query: 160 MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNV 202
           +E  RC R +G+ WRC ++ +  +  CE HL +GR RS  +V
Sbjct: 108 LEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHV 149

The following BLAST results are available for this feature:

BLAST of CsaV3_3G038720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136730.1	7.4e-155	100.00	uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus] >KGN59436.2 hy...	[more]
XP_011652086.1	5.3e-153	99.66	uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]
XP_008443038.1	6.1e-133	90.51	PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo]	[more]
XP_008443039.1	1.2e-131	89.83	PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo]	[more]
XP_008443037.1	2.0e-131	88.37	PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo] >KAA00...	[more]

BLAST of CsaV3_3G038720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G038720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX5	2.6e-153	99.66	Growth-regulating factor OS=Cucumis sativus OX=3659 GN=Csa_3G806230 PE=3 SV=1	[more]
A0A1S3B760	3.0e-133	90.51	Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1	[more]
A0A1S3B7U9	5.6e-132	89.83	Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1	[more]
A0A5A7TKD1	9.5e-132	88.37	Growth-regulating factor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3B737	9.5e-132	88.37	Growth-regulating factor OS=Cucumis melo OX=3656 GN=LOC103486754 PE=3 SV=1	[more]

BLAST of CsaV3_3G038720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42040.1	3.2e-23	37.59	CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 ...	[more]
AT5G53660.1	1.5e-04	40.48	growth-regulating factor 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 161..201 e-value: 4.8E-15 score: 55.0
IPR014977	WRC domain	PROSITE	PS51667	WRC	coord: 159..203 score: 21.18947
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..250
None	No IPR available	PANTHER	PTHR31602:SF19	OS02G0773600 PROTEIN	coord: 7..276
IPR031137	Growth-regulating factor	PANTHER	PTHR31602	FAMILY NOT NAMED	coord: 7..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G038720.1	CsaV3_3G038720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus