CsaV3_3G038090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G038090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	chr3: 31367836 .. 31370136 (-)
RNA-Seq Expression	CsaV3_3G038090
Synteny	CsaV3_3G038090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCTAGAAATTAAACGTTGAGAAATGCTAATCAATGGAATTAATAGAGAATTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAATCCGATAAAAGTAACCTTATCCAATATCAGTTGATGGGATTTTTCCAAGTGACGTGGAATTCCCAAGTGATATGTTACATTTTTGATCTTCCAATTCCCCAAGGCTTCCCGGAGCAGAAAAATCCATCCCTATCACTTGGGAATTTCACCATTCCCATTCCCCTTCTCTTCCTCAAATGTCAGCTTATTCTCTCTCAATGGCTGCTGCTGCTGCTGCTGCTTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTTGTGGTTGAACTTGTATTTTTTAGGGCCAATTACAACTGCTTCACCATTGTTGAGTTCTCATGTGATTTATCTTCTGCATCTTATGTTAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTGTAAATTACTTATATTCTTTCTCTTTTTCCTTTCATTTTCTTTTAGCTTAACAATTGTGGAAATTTTTGCATTCTTTCTAACTTTGGAGTTTGAAAGCAGTGGTTAGAAACTAGGGTTGGATATCCAGAGTTTGTTTTAGCTGTTAGCTTAACTTACTAGCGGTTGTTACTTTCAAATGCGTTCATAGAAGGGCAGAGTTTTTTGGAGAGTAATTTATTTATAAAGGTAGGGAAGTTATTTGAAGGTTTTGTAGAATTAGGTGATATTAGTGTTAGTGTTACACATCAGAGAGGGTGCTGATGATTCTAACACAACGGAGCATACAAATAGATTCTAAATGCCAAGTGTAATAGTTTTGGTACCATGGTACGATGTCTCTATATATGACAGACAAATTTATTGACAGTGTGTAAGATGTTCAAGATTGCTATAATGTTACTAATGGTTGCACTACTTGTCAGCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGTAAGGAAGTGACAGAATTTACTGATGTGATTGATCCTTAACTACATTATTACTTTTCAACTACTTCAAAATGGGCCCATATTAACATAAACCTTGCAAACCAGAATTACATTATTTGAGAACTAGCCATGAAAAAATGTACCTGCATTTTGTATATTTAGCCCTGTGTTATAGATACAAGTCACACATTAACCTCTTCCTATGGCACATGCTTACAGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGAAATCTGATGTTGTGAGTTGGCTTGAAAATTAAACTGAAACTGAAGGTTAAGGCAAATTCTGCAAATTGCATACCTTCAGGTCTTCCCCGCAATTCTCCCATTCCTTGCTCAACGACCAAGGAAGACTAGATTTTTTTCATTGAGTGGTGTATGTGAGTAGAGGGAAAGTGTGGATGTGTTGCCATAGGTTAACGAGTTTTTTTACGTATGGCTGGGGAATTGGACTGGATGTACTATGGAGTCTCTTTGCTGAGTTAATACTACAATATATTCATCTCGCAGGCCTTTT

mRNA sequence

ATGTCAGCTTATTCTCTCTCAATGGCTGCTGCTGCTGCTGCTGCTTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGA

Coding sequence (CDS)

ATGTCAGCTTATTCTCTCTCAATGGCTGCTGCTGCTGCTGCTGCTTCAGTTTCTTCATCTCCACTCTACAACAAACACTTCTTCACTCAACATCCCAACCAAATTCCCTCTCATTTTTCTCCAAAACACAACCAATTGAAGCTTCTCAACCTCACATTCCATTCACCCAACTTTTACCCTCTTTCCTTCTCCTCTGTTTCTCATCTCCACTGTGCGCCTCCTGCTTTCGATGAGCTTGAAATCTCCGACCCAGAAACAGAATACGGACACATACAAGAATCGGATGGTGAAGAAGAAACCCAAGAAGAAGATGAACAAAAGGTATCGGTATCTCGTGAAGCAGGGAAGCTTTACATTGGAAATTTACCCTATGCTATGACTTCTTCCCAATTGTCTGAGGTATTTGCCGAAGCCGGTCATGTGGTTTCTGTGCAGGTTATATACGATAAAGTTACGGATAGGAGTAGGGGATTTGCGTTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGATGGCTCTCAAATCGGTGGTCGAACCGTTCGGGTGAATTTCCCTGAAGTGCCAAGGGGAGGAGAAAAGGAAGTAATGGGGCCAAGGATAAGAAGCAGCTACAACAAATTTGTAGATAGTCCACACAAAATATATGCAGGGAACCTTGGTTGGGGCCTCACTTCTCAGAGTCTAAGAGACGCTTTTGAAAACCAACCGGGGATATTGAGTGCTAAGATCATCTATGATAGGGCATCTGGAAAAAGTAGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGAGTCCATGAATGGAGTGGAAGTTGAAGGGCGACCTCTGCGTTTGAATATTGCTGCAGGACAGTCCCCAATTTCTCCAGCAGCATTCCCAAGGACTGAGAATACCATTGACGGCAAAGAATTGCTTACAAGTATCAGTGCGTGA

Protein sequence

MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPISPAAFPRTENTIDGKELLTSISA*

Homology

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BLAST of CsaV3_3G038090 vs. NCBI nr
Match: XP_004136521.3 (33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothetical protein Csa_001333 [Cucumis sativus])

HSP 1 Score: 627.9 bits (1618), Expect = 5.0e-176
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP
Sbjct: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTIDGKELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of CsaV3_3G038090 vs. NCBI nr
Match: XP_008442930.1 (PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 589.0 bits (1517), Expect = 2.6e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of CsaV3_3G038090 vs. NCBI nr
Match: TYK25330.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 588.6 bits (1516), Expect = 3.3e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of CsaV3_3G038090 vs. NCBI nr
Match: KAA0043803.1 (33 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 588.6 bits (1516), Expect = 3.3e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 48  MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 107

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 108 LSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 167

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 168 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 227

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 228 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 287

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 288 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 347

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 348 SPAAFPRTENTIDSKELLTSISA 368

[Close]

BLAST of CsaV3_3G038090 vs. NCBI nr
Match: XP_038904039.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 564.7 bits (1454), Expect = 5.2e-157
Identity = 294/323 (91.02%), Postives = 302/323 (93.50%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSA S+SMAAAAA +  SSSPL  K FFTQHPNQIPSHFSPK N LKLLNLT H PNFYP
Sbjct: 1   MSASSVSMAAAAAPSVSSSSPLSKKLFFTQHPNQIPSHFSPKQNPLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSS SHLH  PPAFD LE+SDPETEY  IQESD EEETQEEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSPSHLHSVPPAFDGLEVSDPETEYAEIQESDAEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLR+AFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAE ALESMNGVEVEGRPLRLNIAAG++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAEFALESMNGVEVEGRPLRLNIAAGRAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 323

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.6e-84
Identity = 173/323 (53.56%), Postives = 225/323 (69.66%), Query Frame = 0


Query: 12  AAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFH-------SPNFYPLS-- 71
           AA AS SS+ L   + FTQ P      FS  H  L   N  F+           +P+S  
Sbjct: 9   AATASTSSTSLL--YLFTQKPK-----FSVDHLSLSTYNTHFNFKINSTKLKAHFPISSL 68

Query: 72  FSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIGNL 131
           + S   L       D +E+   + E      ++ EEE +E++E+  S S E G+LY+GNL
Sbjct: 69  YRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNL 128

Query: 132 PYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIG 191
           P++MTSSQLSE+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+FDGSQ+G
Sbjct: 129 PFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVG 188

Query: 192 GRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQP 251
           GRTV+VNFPEVPRGGE+EVM  +IRS+Y  FVDSPHK+Y  NL W LTSQ LRDAF +QP
Sbjct: 189 GRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQP 248

Query: 252 GILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPIS- 311
           G +SAK+IYDR+SG+SRGFGF++F +AE   SAL++MN VE+EGRPLRLN+A  ++P+S 
Sbjct: 249 GFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSS 308

Query: 312 -PAAFPRTENTIDGKELLTSISA 324
            P      EN  D  ELL+S+S+
Sbjct: 309 PPVVETSPENDSDNSELLSSLSS 324

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.8e-81
Identity = 174/335 (51.94%), Postives = 229/335 (68.36%), Query Frame = 0


Query: 2   SAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPL 61
           SAY  S  A +AAA+ SS+  +N    +   +Q+   F+PK        L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPN--PL 62

Query: 62  SFSSVSHLH---C-----APPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSRE 121
              S    H   C     A  A DE++ S  E E    +  +GEEE  EE++Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  +IR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AK+IY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAGQ-----SPISPAAFPRTENTIDGKELLTSISA 324
           A+ +     SP S       E +++  E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.9e-39
Identity = 98/279 (35.13%), Postives = 160/279 (57.35%), Query Frame = 0


Query: 33  NQIPSHFSPKHNQLKLLNLTFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQ 92
           +Q PS   P ++ L   +L   S N   LS SS+ H     P           +++  + 
Sbjct: 16  SQTPSSLKP-NSTLSFFSLPSSSLNL-SLSSSSIGHSASIKPFESSFSTRVALSDFDQL- 75

Query: 93  ESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVT 152
               E++ +  ++ + S   E  KL++GNLP+++ S+ L+ +F  AG+V  V+VIYDK++
Sbjct: 76  ----EDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLS 135

Query: 153 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVP-----------RGGEKEV 212
            RSRGF FVTM+T EE + A + F+G +I GR +RVN    P           RGG    
Sbjct: 136 GRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY 195

Query: 213 MGPRIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRAS 272
            G R  +S        + VDS +++Y GNL WG+   +L++ F  Q  ++ AK++YDR S
Sbjct: 196 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 255

Query: 273 GKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 295
           G+SRGFGFV++ +A++   A++S+NG++++GR +R++ A
Sbjct: 256 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-38
Identity = 104/280 (37.14%), Postives = 164/280 (58.57%), Query Frame = 0


Query: 26  HFFTQHPNQIPSHFSPKHNQLKLLNLTFHS--PNFYPLSFSSVSHLHCAPPAF-DELEIS 85
           HF +  P  +P    PK    +  +L+F S  P+   LS SS S   C    F  ++ +S
Sbjct: 9   HFLSLTPQTLP---LPKPTS-QTTSLSFFSLPPSSLNLSLSSSS--SCFSSRFVRKVTLS 68

Query: 86  DPETEYGHIQE-SDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHV 145
           D    +  I++  DG++  +EE      +     K+++GNLP++  S+ L+E+F  AG+V
Sbjct: 69  D----FDQIEDVEDGDDGVEEERNFSPDL-----KIFVGNLPFSADSAALAELFERAGNV 128

Query: 146 VSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEV 205
             V+VIYDK+T RSRGF FVTM++ EE + A + F+G ++ GR +RVN    P   E   
Sbjct: 129 EMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSS 188

Query: 206 M--GPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSR 265
              G R   S+    DS +++Y GNL WG+   +L   F  Q  ++ AK++YDR SG+SR
Sbjct: 189 FRGGSRGGGSF----DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 248

Query: 266 GFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300
           GFGFV++ +AE+  +A+ES++GV++ GR +R++ A  + P
Sbjct: 249 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.0e-38
Identity = 96/255 (37.65%), Postives = 147/255 (57.65%), Query Frame = 0


Query: 49  LNLTFHSPNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKV 108
           LNL+  SP+     FSS        P FD++E              DG+E  +EE     
Sbjct: 40  LNLSLSSPS---SCFSSRFVRKVTLPDFDQIE-----------DVEDGDEGVEEERNFSP 99

Query: 109 SVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEE 168
            +     K+++GNL ++  S+ L+E+F  AG+V  V+VIYDK+T RSRGF FVTM++ EE
Sbjct: 100 DL-----KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 159

Query: 169 AKEAIRMFDGSQIGGRTVRVNFPEVPRGGE----KEVMGPRIRSSYNKFVDSPHKIYAGN 228
            + A + F+G ++ GR +RVN    P   E    +E    R  S      DS +++Y GN
Sbjct: 160 VEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGN 219

Query: 229 LGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEV 288
           L WG+   +L   F  Q  ++ AK++YDR SG+SRGFGFV++ +AE+  +A+ES++GV++
Sbjct: 220 LAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 275

Query: 289 EGRPLRLNIAAGQSP 300
            GR +R++ A  + P
Sbjct: 280 NGRAIRVSPAEARPP 275

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL
Match: A0A0A0LBL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 5.4e-176
Identity = 322/323 (99.69%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSLSMAAAAAAA+VSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP
Sbjct: 1   MSAYSLSMAAAAAAAAVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG
Sbjct: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI
Sbjct: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTIDGKELLTSISA
Sbjct: 301 SPAAFPRTENTIDGKELLTSISA 323

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 589.0 bits (1517), Expect = 1.2e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.6e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 1   MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 60

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 61  LSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 120

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 121 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 181 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 241 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 300

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 301 SPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.6e-164
Identity = 303/323 (93.81%), Postives = 312/323 (96.59%), Query Frame = 0


Query: 1   MSAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYP 60
           MSAYSL  AAAAAAAS SSSPLY KHFFTQHPNQIPSHFSPKHN+LKLLNLT H PNFYP
Sbjct: 48  MSAYSL--AAAAAAASASSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIHLPNFYP 107

Query: 61  LSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAGKLYIG 120
           LSFSSVSH+HCAPPAFDELEISDPETEYG +QESDGEE+TQEEDEQK+SVSREAGKLYIG
Sbjct: 108 LSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREAGKLYIG 167

Query: 121 NLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 180
           NLPYAMTSSQLSEVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ
Sbjct: 168 NLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSQ 227

Query: 181 IGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 240
           IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN
Sbjct: 228 IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLRDAFEN 287

Query: 241 QPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSPI 300
           QPGILSAK+IYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA ++P 
Sbjct: 288 QPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAAERAPT 347

Query: 301 SPAAFPRTENTIDGKELLTSISA 324
           SPAAFPRTENTID KELLTSISA
Sbjct: 348 SPAAFPRTENTIDSKELLTSISA 368

[Close]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 3.0e-142
Identity = 270/328 (82.32%), Postives = 293/328 (89.33%), Query Frame = 0


Query: 1   MSAYSLSMAAAAA-----AASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHS 60
           MSA SL+MAAAAA     ++S SSSP     FFTQ PN+IPSHFSPK   LKLL L  H 
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIHL 60

Query: 61  PNFYPLSFSSVSHLHCAPPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSREAG 120
           PNFYPL+FSS SHL+CAPPAF+ LE+SDP +E    +ESDG+EE++EEDEQKVS SR+AG
Sbjct: 61  PNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQL+EVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGS IGGRTVRVNFPEVPRGGEKEVMGP+IRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 DAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIAA 300
           +AFENQPGILSAK+IYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+AA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 GQSPISPAAFPRTENTIDGKELLTSISA 324
            ++P SPAAF RTENTID  ELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of CsaV3_3G038090 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 303.5 bits (776), Expect = 2.0e-82
Identity = 174/335 (51.94%), Postives = 229/335 (68.36%), Query Frame = 0


Query: 2   SAYSLSMAAAAAAASVSSSPLYNKHFFTQHPNQIPSHFSPKHNQLKLLNLTFHSPNFYPL 61
           SAY  S  A +AAA+ SS+  +N    +   +Q+   F+PK        L  + PN  PL
Sbjct: 3   SAYCSSAVAVSAAATASSAATFNPLLSSHSNSQLFYRFTPKS-----FKLVANCPN--PL 62

Query: 62  SFSSVSHLH---C-----APPAFDELEISDPETEYGHIQESDGEEETQEEDEQKVSVSRE 121
              S    H   C     A  A DE++ S  E E    +  +GEEE  EE++Q    S E
Sbjct: 63  ILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEV-EEEKQTTQASGE 122

Query: 122 AGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAI 181
            G+LY+GNLPY +TSS+LS++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA+
Sbjct: 123 EGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM 182

Query: 182 RMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTSQS 241
           +MF+ SQIGGRTV+VNFPEVPRGGE EVM  +IR +   +VDSPHK+YAGNLGW LTSQ 
Sbjct: 183 QMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQG 242

Query: 242 LRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNI 301
           L+DAF +QPG+L AK+IY+R +G+SRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN+
Sbjct: 243 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 302

Query: 302 AAGQ-----SPISPAAFPRTENTIDGKELLTSISA 324
           A+ +     SP S       E +++  E+L+++SA
Sbjct: 303 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of CsaV3_3G038090 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 5.2e-38
Identity = 82/217 (37.79%), Postives = 136/217 (62.67%), Query Frame = 0


Query: 93  ESDGEEETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVT 152
           E DG  +     EQ  S      KL++GNLP+ + S+QL+++F  AG+V  V+VIYDK+T
Sbjct: 72  EEDGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKIT 131

Query: 153 DRSRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNF-PEVPRGGEKEVMGPRIR---- 212
            RSRGF FVTM+++ E + A + F+G ++ GR +RVN  P  P+  +    GPR      
Sbjct: 132 GRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSS 191

Query: 213 -SSY----NKFVDSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFG 272
            S Y         S +++Y GNL WG+   +L   F  Q  ++ A++IYDR SG+S+GFG
Sbjct: 192 GSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFG 251

Query: 273 FVSFETAEDAESALESMNGVEVEGRPLRLNIAAGQSP 300
           FV+++++++ ++A++S++G +++GR +R++ A  + P
Sbjct: 252 FVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

[Close]

BLAST of CsaV3_3G038090 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-34
Identity = 72/203 (35.47%), Postives = 127/203 (62.56%), Query Frame = 0


Query: 98  EETQEEDEQKVSVSREAG---KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDR 157
           EE +++D     +   A    KLY GNLPY + S+ L+++  +  +   V+V+Y++ T +
Sbjct: 65  EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124

Query: 158 SRGFAFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFV 217
           SRGFAFVTM+ +E+    I   DG++  GR ++VNF + P+  ++ +           + 
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPL-----------YP 184

Query: 218 DSPHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAES 277
           ++ HK++ GNL W +TS+SL  AF     ++ A++++D  +G+SRG+GFV + +  + E+
Sbjct: 185 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 244

Query: 278 ALESMNGVEVEGRPLRLNIAAGQ 298
           ALES++G E+EGR +R+N+A G+
Sbjct: 245 ALESLDGFELEGRAIRVNLAQGK 256

[Close]

BLAST of CsaV3_3G038090 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-33
Identity = 73/196 (37.24%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 99  ETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGF 158
           ET+E+       S  A ++YIGN+P  +T+ QL+++  E G V  VQV+YDK + RSR F
Sbjct: 60  ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119

Query: 159 AFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPH 218
            F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FVDSP+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFVDSPY 179

Query: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL   +T + L + F  +  ++SAK+     + KS GFGFV+F + ED E+A+ +
Sbjct: 180 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 239

Query: 279 MNGVEVEGRPLRLNIA 295
           +N   +EG+ +R+N A
Sbjct: 240 LNNSLLEGQKIRVNKA 253

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BLAST of CsaV3_3G038090 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-33
Identity = 73/196 (37.24%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 99  ETQEEDEQKVSVSREAGKLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGF 158
           ET+E+       S  A ++YIGN+P  +T+ QL+++  E G V  VQV+YDK + RSR F
Sbjct: 60  ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119

Query: 159 AFVTMATLEEAKEAIRMFDGSQIGGRTVRVNFPEVPRGGEKEVMGPRIRSSYNKFVDSPH 218
            F TM ++E+A   +   +G+ + GR ++VN  E P     ++    ++S  + FVDSP+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDL--SVLQSEDSAFVDSPY 179

Query: 219 KIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALES 278
           K+Y GNL   +T + L + F  +  ++SAK+     + KS GFGFV+F + ED E+A+ +
Sbjct: 180 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 239

Query: 279 MNGVEVEGRPLRLNIA 295
           +N   +EG+ +R+N A
Sbjct: 240 LNNSLLEGQKIRVNKA 253

The following BLAST results are available for this feature:

BLAST of CsaV3_3G038090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136521.3	5.0e-176	100.00	33 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8651116.1 hypothet...	[more]
XP_008442930.1	2.6e-164	93.81	PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
TYK25330.1	3.3e-164	93.81	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
KAA0043803.1	3.3e-164	93.81	33 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
XP_038904039.1	5.2e-157	91.02	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]

BLAST of CsaV3_3G038090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	3.6e-84	53.56	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.8e-81	51.94	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P49314	5.9e-39	35.13	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08935	1.7e-38	37.14	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	5.0e-38	37.65	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of CsaV3_3G038090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBL6	5.4e-176	99.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782700 PE=4 SV=1	[more]
A0A1S3B7N1	1.2e-164	93.81	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	1.6e-164	93.81	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TK11	1.6e-164	93.81	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1J651	3.0e-142	82.32	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]

BLAST of CsaV3_3G038090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	2.0e-82	51.94	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	5.2e-38	37.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	3.5e-34	35.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.1	6.5e-33	37.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	6.5e-33	37.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 116..189 e-value: 7.7E-28 score: 108.5 coord: 219..292 e-value: 5.5E-26 score: 102.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 220..290 e-value: 3.1E-19 score: 68.6 coord: 117..187 e-value: 1.2E-20 score: 73.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 115..193 score: 19.399549
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 218..296 score: 18.95611
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 201..302 e-value: 7.4E-25 score: 89.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 77..200 e-value: 2.6E-29 score: 104.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..110
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..304
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 1..304
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 116..192 e-value: 2.10843E-34 score: 118.87
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 112..192
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 213..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G038090.1	CsaV3_3G038090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding