CsaV3_3G037390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G037390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Auxin-responsive protein SAUR15-like
Location	chr3: 30894556 .. 30894918 (+)
RNA-Seq Expression	CsaV3_3G037390
Synteny	CsaV3_3G037390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAATAGGGTGCCATCTTTGAAGAAAGTAGCCAAAGGGAACAACGGGGAGCGACGACATGAGGATTCTCTACTAGCGTCGGAGATGGAGGCGGGCGGGGGACGATGCCCTACACCGAGGGGGTGTGTGGCTTTGTATGTGGGAGAAGAATGCAGGAGATTTGTGGTACCAACTAGGTTTCTTTGTCACCCACTTTTCAAGATGGTGTTGGATAAAACCTATAAGGAGTTTGGATTTAATCAGAAAAGTGGTCTTGTGGTTTCTTGTAGTGTTTTTGCTTTCCAAGAGATTTTGAACACTATTGAAGCCAATCATGGTAGCTTCCATTTTGGTGAACTTGTTCATGAGTTCCTTTGA

mRNA sequence

ATGTTGAAGAATAGGGTGCCATCTTTGAAGAAAGTAGCCAAAGGGAACAACGGGGAGCGACGACATGAGGATTCTCTACTAGCGTCGGAGATGGAGGCGGGCGGGGGACGATGCCCTACACCGAGGGGTGTTTTTGCTTTCCAAGAGATTTTGAACACTATTGAAGCCAATCATGGTAGCTTCCATTTTGGTGAACTTGTTCATGAGTTCCTTTGA

Coding sequence (CDS)

ATGTTGAAGAATAGGGTGCCATCTTTGAAGAAAGTAGCCAAAGGGAACAACGGGGAGCGACGACATGAGGATTCTCTACTAGCGTCGGAGATGGAGGCGGGCGGGGGACGATGCCCTACACCGAGGGGTGTTTTTGCTTTCCAAGAGATTTTGAACACTATTGAAGCCAATCATGGTAGCTTCCATTTTGGTGAACTTGTTCATGAGTTCCTTTGA

Protein sequence

MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGVFAFQEILNTIEANHGSFHFGELVHEFL*

Homology

[Close]

BLAST of CsaV3_3G037390 vs. NCBI nr
Match: KAE8651093.1 (hypothetical protein Csa_002638 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGVFAFQEILNTIEANHGS 60
          MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGVFAFQEILNTIEANHGS
Sbjct: 1  MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGVFAFQEILNTIEANHGS 60

Query: 61 FHFGELVHEFL 72
          FHFGELVHEFL
Sbjct: 61 FHFGELVHEFL 71

[Close]

BLAST of CsaV3_3G037390 vs. NCBI nr
Match: KAA0043872.1 (auxin-responsive protein SAUR15-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 65/120 (54.17%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRG----------------- 60
           MLKNRVPSLKK+AK  +GERR +DSLLASEMEAGGGRCPTPRG                 
Sbjct: 1   MLKNRVPSLKKLAKA-SGERRPDDSLLASEMEAGGGRCPTPRGCVALYVGEECRRFVVPT 60

Query: 61  --------------------------------VFAFQEILNTIEANHGSFHFGELVHEFL 72
                                           VFAFQEILNTIEANHGSFHFGELVHEFL
Sbjct: 61  RFLCHPLFRMVLDKTYKEFGFNQKSGLVVSCSVFAFQEILNTIEANHGSFHFGELVHEFL 119

[Close]

BLAST of CsaV3_3G037390 vs. NCBI nr
Match: KAG6596577.1 (Auxin-responsive protein SAUR72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 48/120 (40.00%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRG----------------- 60
           MLK R+PSLKK+ K N  + R    +LAS+M A  GR  TPRG                 
Sbjct: 1   MLKKRIPSLKKLVKTN--KHRPGKCILASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPT 60

Query: 61  --------------------------------VFAFQEILNTIEANHGSFHFGELVHEFL 72
                                           VFAFQEILNTIEAN GSFHFGE VHEF+
Sbjct: 61  KFLCHPLFKMVLDKAYNEFGFDQRSGLVIPCNVFAFQEILNTIEANRGSFHFGEHVHEFV 118

[Close]

BLAST of CsaV3_3G037390 vs. ExPASy TrEMBL
Match: A0A0A0LAX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777530 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.6e-26
Identity = 71/120 (59.17%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRG----------------- 60
           MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRG                 
Sbjct: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGCVALYVGEECRRFVVPT 60

Query: 61  --------------------------------VFAFQEILNTIEANHGSFHFGELVHEFL 72
                                           VFAFQEILNTIEANHGSFHFGELVHEFL
Sbjct: 61  RFLCHPLFKMVLDKTYKEFGFNQKSGLVVSCSVFAFQEILNTIEANHGSFHFGELVHEFL 120

[Close]

BLAST of CsaV3_3G037390 vs. ExPASy TrEMBL
Match: A0A5A7TKN6 (Auxin-responsive protein SAUR15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G002080 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-20
Identity = 65/120 (54.17%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRG----------------- 60
           MLKNRVPSLKK+AK  +GERR +DSLLASEMEAGGGRCPTPRG                 
Sbjct: 1   MLKNRVPSLKKLAKA-SGERRPDDSLLASEMEAGGGRCPTPRGCVALYVGEECRRFVVPT 60

Query: 61  --------------------------------VFAFQEILNTIEANHGSFHFGELVHEFL 72
                                           VFAFQEILNTIEANHGSFHFGELVHEFL
Sbjct: 61  RFLCHPLFRMVLDKTYKEFGFNQKSGLVVSCSVFAFQEILNTIEANHGSFHFGELVHEFL 119

The following BLAST results are available for this feature:

BLAST of CsaV3_3G037390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651093.1	2.0e-32	100.00	hypothetical protein Csa_002638 [Cucumis sativus]	[more]
KAA0043872.1	2.9e-20	54.17	auxin-responsive protein SAUR15-like [Cucumis melo var. makuwa]	[more]
KAG6596577.1	1.5e-08	40.00	Auxin-responsive protein SAUR72, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsaV3_3G037390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G037390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAX7	8.6e-26	59.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777530 PE=3 SV=1	[more]
A0A5A7TKN6	1.4e-20	54.17	Auxin-responsive protein SAUR15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of CsaV3_3G037390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G037390.1	CsaV3_3G037390.1	mRNA