CsaV3_3G036410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G036410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribonuclease T(2)
Location	chr3: 30266571 .. 30267312 (+)
RNA-Seq Expression	CsaV3_3G036410
Synteny	CsaV3_3G036410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAATCTATTTTAATTATTTACTTTTTGAGTTTGGTGGTGTTCGTTAATGGCGGCGTTCCATTTGAGTTCTTCCAATTCGTGGAACAGTGGGGGCCGAATGTATGTAATACTGGCGCTCGTGTCTCTCCATGTCATACTCCGCCTCAAGCCAAGTTCACTATTCATGGCTTGTGGCCAAGTAATCACAGTAATGCTCATCTTCTTTGTCAATCAATAACGAAATATACCAAGGTTTCCATCTTCTTTAATATTTGTATGTGTTCTTTTTAATCTATCTTTAACATTTTAACTAATATAACGTTGTAACATGCTTTAATTTTAGGTTTTATTACTTGAAAGACAACTGAATATATCTTGGCCAGATTTAAAAGGTGGGATGAACAATGAATTTTGGACTCATGAATGGAATTTTCATGGAAAATGTTCAGATCCTCCTTTTAGCTTATTTCAATATTTTCAAATGTCTTTGAATCTTCTACAAAAATTTGATGTGTTGGCCATCTTAAAGGCTGCCGGGCTCAACCCTCAAACCTCCCAAAACATTGGAATCCAAAACATCATGACCCCTATTCAAAGGACAACCAAAAAGTATCCTGGCATCCGCTGCTACAAAAATGTTAAAACGGGCAAGTCGCAGTTGAATGAAATTGTACTGTGTTTGGAAAAAGATGGTGCTACCCTCATCGACTGCCCTACATTTGTTAGTAGCACTTGTGCAAAATCAATTGTATGGTAG

mRNA sequence

ATGACTCAATCTATTTTAATTATTTACTTTTTGAGTTTGGTGGTGTTCGTTAATGGCGGCGTTCCATTTGAGTTCTTCCAATTCGTGGAACAGTGGGGGCCGAATGTATGTAATACTGGCGCTCGTGTCTCTCCATGTCATACTCCGCCTCAAGCCAAGTTCACTATTCATGGCTTGTGGCCAAGTAATCACAGTAATGCTCATCTTCTTTGTCAATCAATAACGAAATATACCAAGGTTTTATTACTTGAAAGACAACTGAATATATCTTGGCCAGATTTAAAAGGTGGGATGAACAATGAATTTTGGACTCATGAATGGAATTTTCATGGAAAATGTTCAGATCCTCCTTTTAGCTTATTTCAATATTTTCAAATGTCTTTGAATCTTCTACAAAAATTTGATGTGTTGGCCATCTTAAAGGCTGCCGGGCTCAACCCTCAAACCTCCCAAAACATTGGAATCCAAAACATCATGACCCCTATTCAAAGGACAACCAAAAAGTATCCTGGCATCCGCTGCTACAAAAATGTTAAAACGGGCAAGTCGCAGTTGAATGAAATTGTACTGTGTTTGGAAAAAGATGGTGCTACCCTCATCGACTGCCCTACATTTGTTAGTAGCACTTGTGCAAAATCAATTGTATGGTAG

Coding sequence (CDS)

ATGACTCAATCTATTTTAATTATTTACTTTTTGAGTTTGGTGGTGTTCGTTAATGGCGGCGTTCCATTTGAGTTCTTCCAATTCGTGGAACAGTGGGGGCCGAATGTATGTAATACTGGCGCTCGTGTCTCTCCATGTCATACTCCGCCTCAAGCCAAGTTCACTATTCATGGCTTGTGGCCAAGTAATCACAGTAATGCTCATCTTCTTTGTCAATCAATAACGAAATATACCAAGGTTTTATTACTTGAAAGACAACTGAATATATCTTGGCCAGATTTAAAAGGTGGGATGAACAATGAATTTTGGACTCATGAATGGAATTTTCATGGAAAATGTTCAGATCCTCCTTTTAGCTTATTTCAATATTTTCAAATGTCTTTGAATCTTCTACAAAAATTTGATGTGTTGGCCATCTTAAAGGCTGCCGGGCTCAACCCTCAAACCTCCCAAAACATTGGAATCCAAAACATCATGACCCCTATTCAAAGGACAACCAAAAAGTATCCTGGCATCCGCTGCTACAAAAATGTTAAAACGGGCAAGTCGCAGTTGAATGAAATTGTACTGTGTTTGGAAAAAGATGGTGCTACCCTCATCGACTGCCCTACATTTGTTAGTAGCACTTGTGCAAAATCAATTGTATGGTAG

Protein sequence

MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW*

Homology

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BLAST of CsaV3_3G036410 vs. NCBI nr
Match: XP_031738547.1 (ribonuclease MC-like [Cucumis sativus] >XP_031739193.1 ribonuclease MC-like [Cucumis sativus] >KAE8651059.1 hypothetical protein Csa_001394 [Cucumis sativus] >KAE8651065.1 hypothetical protein Csa_001488 [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 4.6e-125
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW
Sbjct: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL 120
           PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL
Sbjct: 61  PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL 120

Query: 121 FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 180
           FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT
Sbjct: 121 FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 180

Query: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
           GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW
Sbjct: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 216

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BLAST of CsaV3_3G036410 vs. NCBI nr
Match: KAE8651058.1 (hypothetical protein Csa_002465 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 8.4e-111
Identity = 193/216 (89.35%), Postives = 203/216 (93.98%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW
Sbjct: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL 120
           PSNHSNAHLLCQS T Y+KV+ LE QLNISWPDLK G N++FW HEW+ HGKCSDPPFSL
Sbjct: 61  PSNHSNAHLLCQSKTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSL 120

Query: 121 FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 180
           FQYFQ+SLNLL+KFD+L ILKAAGLNPQTSQN+ IQNIM PIQRTTKKYPGIRC KNVKT
Sbjct: 121 FQYFQISLNLLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKT 180

Query: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
           GKSQLNEIVLCLEKDGATLIDCPTFVS+TCAKS VW
Sbjct: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVW 216

[Close]

BLAST of CsaV3_3G036410 vs. NCBI nr
Match: XP_031738690.1 (ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 8.4e-111
Identity = 193/216 (89.35%), Postives = 203/216 (93.98%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW
Sbjct: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL 120
           PSNHSNAHLLCQS T Y+KV+ LE QLNISWPDLK G N++FW HEW+ HGKCSDPPFSL
Sbjct: 61  PSNHSNAHLLCQSKTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSL 120

Query: 121 FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 180
           FQYFQ+SLNLL+KFD+L ILKAAGLNPQTSQN+ IQNIM PIQRTTKKYPGIRC KNVKT
Sbjct: 121 FQYFQISLNLLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKT 180

Query: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
           GKSQLNEIVLCLEKDGATLIDCPTFVS+TCAKS VW
Sbjct: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVW 216

[Close]

BLAST of CsaV3_3G036410 vs. NCBI nr
Match: XP_011651927.1 (ribonuclease MC [Cucumis sativus] >KGN58920.1 hypothetical protein Csa_001884 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.4e-52
Identity = 111/223 (49.78%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           M Q I I+  LS ++FVN G+PF+FFQ V+QWGPN+C+     S C+  PQ  FTIHGLW
Sbjct: 1   MAQHIFILCLLSSLLFVN-GIPFDFFQLVQQWGPNICSPAG--SKCYAQPQPMFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITK---YTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPP 120
           PSN S   +LC    K     KV  LE+ LN  WPD+  G N+ FW HEW  H  C DPP
Sbjct: 61  PSNFSTVPILCPRTKKLFPQGKVTSLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPP 120

Query: 121 FSLFQYFQMSL--NLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCY 180
           F++F YF +SL   + + +D+L IL  AGL+ QT +++  QN++ PI+  T   PGIRC 
Sbjct: 121 FTIFWYFDISLRHRMNKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCN 180

Query: 181 KNVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAK--SIVW 217
            N  T K QL EIVLC   DG TLIDCP+FVS+TC      VW
Sbjct: 181 INGITKKLQLKEIVLCFGNDGTTLIDCPSFVSNTCTSQPKFVW 220

[Close]

BLAST of CsaV3_3G036410 vs. NCBI nr
Match: TYK25090.1 (S-RNase [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-51
Identity = 109/221 (49.32%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           M Q   I+  LSL++FVN G PF+FFQ VEQWGPN CN G +   CH  PQ +FTIHGLW
Sbjct: 1   MAQHTFILCLLSLLLFVN-GYPFDFFQLVEQWGPNTCNDGTQ---CHAQPQPEFTIHGLW 60

Query: 61  PSNHSNAHLLC--QSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPF 120
           PSN SNA L C  + +    ++ LLE  L+  WPD+  G N  FW++EW  HG C DPPF
Sbjct: 61  PSNFSNARLFCATRKLFDNGQISLLEGDLDRYWPDVINGNNRGFWSNEWKKHGACIDPPF 120

Query: 121 SLFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGI--QNIMTPIQRTTKKYPGIRCYK 180
           ++ QYFQ+SL+  + +D+L IL       +   N G+  ++I+ PI   T K  GIRC K
Sbjct: 121 NITQYFQLSLDHHRTYDLLKILNGVWHRNRQMPNNGLAPKDILNPIFNATNKTAGIRCNK 180

Query: 181 NVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAK-SIVW 217
           N  T K QL+EIVLC + +G TLIDCP FVS++C +   VW
Sbjct: 181 NGITKKLQLHEIVLCFDNNGTTLIDCPKFVSNSCNQPKFVW 217

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BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-29
Identity = 67/198 (33.84%), Postives = 107/198 (54.04%), Query Frame = 0


Query: 23  FEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSITKY--TKV 82
           F+ F FV+QW P VC+   +   C       FTIHGLWP     +   C   + +  TK+
Sbjct: 1   FDSFWFVQQWPPAVCSF-QKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKI 60

Query: 83  LLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKFDVLAIL 142
             L+ QLN  WP++    N +FW+HEW  HG CS+  F+   YF++++++   +D++  L
Sbjct: 61  SHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGAL 120

Query: 143 K--AAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEKDGAT 202
           +  AAG N +T     I+     ++    K+PG+RC  + +T  S L ++V C  +DG+T
Sbjct: 121 RPHAAGPNGRTKSRQAIKGF---LKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGST 180

Query: 203 LIDCPTFVSSTCAKSIVW 217
           LIDC      TC  + ++
Sbjct: 181 LIDC---TRDTCGANFIF 191

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-26
Identity = 69/215 (32.09%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 6   LIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVS-PCHTPPQAKFTIHGLWPSNH 65
           L++   S+    +    F+FF FV+QW  + C+T  +   P    P A F IHGLWP+  
Sbjct: 13  LLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYK 72

Query: 66  SNAH-LLCQSITKYTKVLL--LERQLNISWPDL--KGGMNNEFWTHEWNFHGKCSDPPFS 125
              +   C +   +    +  L   +  SWP L    G    FW HEW  HG CS+    
Sbjct: 73  DGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVID 132

Query: 126 LFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVK 185
             +YFQ +LNL QK ++L  L  AG+NP   ++  +++I   I+ +    P + C ++  
Sbjct: 133 QHEYFQTALNLKQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPWVECNRD-G 192

Query: 186 TGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSI 215
           +G SQL ++ LC+++ G+ LI+CP F    C   I
Sbjct: 193 SGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEI 225

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-25
Identity = 66/217 (30.41%), Postives = 115/217 (53.00%), Query Frame = 0


Query: 5   ILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVS-PCHTPPQAKFTIHGLWPSN 64
           ++++     +  +N    F+FF FV+QW  + C+T      P    P A F IHGLWP+N
Sbjct: 11  LILLIITQCLSVLNAAKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNN 70

Query: 65  HSNAH-LLCQSITKY--TKVLLLERQLNISWPDL--KGGMNNEFWTHEWNFHGKCSDPPF 124
           +   +   C   + Y  +++  L   +  +WP L    G  + FW+HEW  HG C++   
Sbjct: 71  NDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVL 130

Query: 125 -SLFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKN 184
            +   YF+ +L+L  + D+L+IL+ A ++P   ++  + NI   I+      P I+C  +
Sbjct: 131 TNQHAYFKKALDLKNQIDLLSILQGADIHPD-GESYDLVNIRNAIKSAIGYTPWIQCNVD 190

Query: 185 VKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSI 215
            ++G SQL ++ +C++  G++LI+CP F    C  SI
Sbjct: 191 -QSGNSQLYQVYICVDGSGSSLIECPIFPGGKCGTSI 225

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot
Match: Q38717 (Ribonuclease S-4 OS=Antirrhinum hispanicum OX=49039 GN=S4 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.2e-24
Identity = 61/187 (32.62%), Postives = 95/187 (50.80%), Query Frame = 0


Query: 24  EFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHS-NAHLLC--QSITKYTKV 83
           ++ + V QW  + C   +R      P  + FTIHGLWP N++  A   C   +  ++T  
Sbjct: 34  DYLKLVLQWPKSFCLINSRKCQ-RNPLPSNFTIHGLWPDNYTRQAPQSCTTNNFQRFTDT 93

Query: 84  LLLERQLNISWPDLK----GGMNNEFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKFDV 143
             +E+++  SWPDLK     G++  FW  +W  HG C  PP     YF  +L L  + DV
Sbjct: 94  -DIEQRMEESWPDLKQQSIAGLSYNFWQDQWRKHGSCCFPPHESEIYFLKALELKDRLDV 153

Query: 144 LAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEKDG 203
           L IL+    NP T Q   +  +   I R   K P ++C       +S L E+V+C++ +G
Sbjct: 154 LTILENNNFNPGTPQPFSVLRVFNTISRAIGKTPILKC------AQSYLKEVVICVDNNG 212

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot
Match: Q40381 (Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-23
Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 23  FEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLCQSITKYTKVL- 82
           FE+ Q V QW    C+T    +PC   P   FTIHGLWP N S     C +   +  +  
Sbjct: 24  FEYMQLVLQWPTAFCHT----TPCKRIPN-NFTIHGLWPDNVSTTLNYCAAKENFKNIED 83

Query: 83  -LLERQLNISWPDLKGG-----MNNEFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKFD 142
              +  L   WPDL         +  FW HE+N HGKC    ++  QYF +++ L  KFD
Sbjct: 84  DTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCCSESYNREQYFDLAMALKDKFD 143

Query: 143 VLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEKD 202
           +L+ L+  G+ P       +Q I + I++ T+ YP + C K    G  +L EI +C +  
Sbjct: 144 LLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCTK----GIMELVEIGICFDSM 202

Query: 203 GATLIDCP 204
              +I+CP
Sbjct: 204 VKNVINCP 202

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL
Match: A0A0A0LAN6 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.1e-111
Identity = 193/216 (89.35%), Postives = 203/216 (93.98%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW
Sbjct: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSL 120
           PSNHSNAHLLCQS T Y+KV+ LE QLNISWPDLK G N++FW HEW+ HGKCSDPPFSL
Sbjct: 61  PSNHSNAHLLCQSKTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSL 120

Query: 121 FQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 180
           FQYFQ+SLNLL+KFD+L ILKAAGLNPQTSQN+ IQNIM PIQRTTKKYPGIRC KNVKT
Sbjct: 121 FQYFQISLNLLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKT 180

Query: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
           GKSQLNEIVLCLEKDGATLIDCPTFVS+TCAKS VW
Sbjct: 181 GKSQLNEIVLCLEKDGATLIDCPTFVSNTCAKSFVW 216

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL
Match: A0A0A0LAB0 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.6e-53
Identity = 111/223 (49.78%), Postives = 140/223 (62.78%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           M Q I I+  LS ++FVN G+PF+FFQ V+QWGPN+C+     S C+  PQ  FTIHGLW
Sbjct: 1   MAQHIFILCLLSSLLFVN-GIPFDFFQLVQQWGPNICSPAG--SKCYAQPQPMFTIHGLW 60

Query: 61  PSNHSNAHLLCQSITK---YTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPP 120
           PSN S   +LC    K     KV  LE+ LN  WPD+  G N+ FW HEW  H  C DPP
Sbjct: 61  PSNFSTVPILCPRTKKLFPQGKVTSLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPP 120

Query: 121 FSLFQYFQMSL--NLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCY 180
           F++F YF +SL   + + +D+L IL  AGL+ QT +++  QN++ PI+  T   PGIRC 
Sbjct: 121 FTIFWYFDISLRHRMNKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCN 180

Query: 181 KNVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAK--SIVW 217
            N  T K QL EIVLC   DG TLIDCP+FVS+TC      VW
Sbjct: 181 INGITKKLQLKEIVLCFGNDGTTLIDCPSFVSNTCTSQPKFVW 220

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL
Match: A0A5D3DP91 (Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002140 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 109/221 (49.32%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLW 60
           M Q   I+  LSL++FVN G PF+FFQ VEQWGPN CN G +   CH  PQ +FTIHGLW
Sbjct: 1   MAQHTFILCLLSLLLFVN-GYPFDFFQLVEQWGPNTCNDGTQ---CHAQPQPEFTIHGLW 60

Query: 61  PSNHSNAHLLC--QSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPF 120
           PSN SNA L C  + +    ++ LLE  L+  WPD+  G N  FW++EW  HG C DPPF
Sbjct: 61  PSNFSNARLFCATRKLFDNGQISLLEGDLDRYWPDVINGNNRGFWSNEWKKHGACIDPPF 120

Query: 121 SLFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGI--QNIMTPIQRTTKKYPGIRCYK 180
           ++ QYFQ+SL+  + +D+L IL       +   N G+  ++I+ PI   T K  GIRC K
Sbjct: 121 NITQYFQLSLDHHRTYDLLKILNGVWHRNRQMPNNGLAPKDILNPIFNATNKTAGIRCNK 180

Query: 181 NVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAK-SIVW 217
           N  T K QL+EIVLC + +G TLIDCP FVS++C +   VW
Sbjct: 181 NGITKKLQLHEIVLCFDNNGTTLIDCPKFVSNSCNQPKFVW 217

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL
Match: A0A6J1F837 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 100/217 (46.08%), Postives = 131/217 (60.37%), Query Frame = 0


Query: 4   SILIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSN 63
           SI    F+ L++ VN    F++FQ V+QW P  C++  +V  CH  P   FTIHGLWPSN
Sbjct: 9   SIFNFVFVVLILCVN--AQFDYFQMVQQWPPAKCSS-VKVR-CHVQPPTMFTIHGLWPSN 68

Query: 64  HSNAHLLC-QSITKYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSLFQ 123
           +SNA L+C       T++  L  QLN  WPD+  G N +FW HEW+ HG CS+PPF+  Q
Sbjct: 69  YSNARLVCAPQPFNPTQIAALRPQLNTYWPDVIQGKNQQFWQHEWDRHGICSNPPFNQLQ 128

Query: 124 YFQMSLNLL--QKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKT 183
           YFQ++LN+     +D+L IL AAGL P  +     ++I   IQ  T K PG+RC  N ++
Sbjct: 129 YFQITLNIRTNHSYDLLTILNAAGLGPSDTNIREYKDIEGAIQAATGKKPGLRCNINAQS 188

Query: 184 -GKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
             K QL EI+LC +KDG TLIDC  F   TC    VW
Sbjct: 189 KEKKQLLEIILCFDKDGITLIDCTEFAGITCPPQFVW 221

[Close]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL
Match: A0A6J1EXD5 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 98/220 (44.55%), Postives = 125/220 (56.82%), Query Frame = 0


Query: 1   MTQSILIIYFLSLVVFVN-GGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGL 60
           M Q+  I+     V+  +     F++FQ V+QW P  C +G R   C+  P A FTIHGL
Sbjct: 1   MAQAPFIVSIFKFVLLTSCVKAQFDYFQMVQQWPPATC-SGVR---CYANPPAMFTIHGL 60

Query: 61  WPSNHSNAHLLCQSIT-KYTKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPF 120
           WPSN+SN  L+C        ++  L  QLN  WPD+  G N  FW HEW+ HG CSDPPF
Sbjct: 61  WPSNYSNVPLVCAGQPFNPAQIATLVPQLNTYWPDVISGNNQRFWKHEWDSHGTCSDPPF 120

Query: 121 SLFQYFQMSLNLL--QKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYK 180
           +  QYFQ +LN+     +D+LAIL  AGL P  +       I   IQ  T K PG+RC K
Sbjct: 121 NQLQYFQTTLNIRTNHNYDLLAILNTAGLGPTATNTRQYGAIEGAIQAATGKKPGLRCNK 180

Query: 181 NVKTGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSIVW 217
           N ++ K QL EI+LC +K+G TLIDC  F   TC    VW
Sbjct: 181 NAQSKKKQLFEIILCFDKNGVTLIDCTQFAGITCPSQFVW 216

[Close]

BLAST of CsaV3_3G036410 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-27
Identity = 69/215 (32.09%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 6   LIIYFLSLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVS-PCHTPPQAKFTIHGLWPSNH 65
           L++   S+    +    F+FF FV+QW  + C+T  +   P    P A F IHGLWP+  
Sbjct: 13  LLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYK 72

Query: 66  SNAH-LLCQSITKYTKVLL--LERQLNISWPDL--KGGMNNEFWTHEWNFHGKCSDPPFS 125
              +   C +   +    +  L   +  SWP L    G    FW HEW  HG CS+    
Sbjct: 73  DGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVID 132

Query: 126 LFQYFQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVK 185
             +YFQ +LNL QK ++L  L  AG+NP   ++  +++I   I+ +    P + C ++  
Sbjct: 133 QHEYFQTALNLKQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPWVECNRD-G 192

Query: 186 TGKSQLNEIVLCLEKDGATLIDCPTFVSSTCAKSI 215
           +G SQL ++ LC+++ G+ LI+CP F    C   I
Sbjct: 193 SGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEI 225

[Close]

BLAST of CsaV3_3G036410 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 111.3 bits (277), Expect = 9.8e-25
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 23  FEFFQFVEQWGPNVCNTG-ARVSPCHTPPQAKFTIHGLWPS-NHSNAHLLCQSITKY--T 82
           F+FF FV QW    C+T  A   P    P A F IHGLWP+ N  +    C   +++  +
Sbjct: 28  FDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSNCDPDSQFDRS 87

Query: 83  KVLLLERQLNISWPDLKGGMNN--EFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKFDV 142
           ++  L   L  +WP L    N    FW HEW  HG CS+      +YF+ +L L QK ++
Sbjct: 88  QISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVMDQHEYFENALKLKQKANL 147

Query: 143 LAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEKDG 202
           L ILK +G+NP       +  I   I+      PGI C K+ +   +QL++I +C++  G
Sbjct: 148 LQILKNSGINPDDG-FYNLDKITNAIKDGIGFTPGIECNKDPER-NAQLHQIYICVDTSG 207

Query: 203 ATLIDCPTFVSSTCAKSI 215
              I+CP     +C   I
Sbjct: 208 TEFIECPVLPRGSCPSQI 223

[Close]

BLAST of CsaV3_3G036410 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-22
Identity = 65/196 (33.16%), Postives = 96/196 (48.98%), Query Frame = 0


Query: 23  FEFFQFVEQWGPNVCNTGARVSPCHT---PPQAKFTIHGLWPSNHSNA-HLLCQSITKY- 82
           F+FF FV QW    C+  +R S C+     P A F IHGLWP+  +      C   +++ 
Sbjct: 22  FDFFYFVLQWPGAYCD--SRHSCCYPQTGKPAADFGIHGLWPNYKTGGWPQNCNPDSRFD 81

Query: 83  -TKVLLLERQLNISWPDLKGGMNN--EFWTHEWNFHGKCSDPPFSLFQYFQMSLNLLQKF 142
             +V  L   L   WP L    N+  +FWTHEW  HG C++       YF+  L L QK 
Sbjct: 82  DLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQHDYFEAGLKLKQKA 141

Query: 143 DVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIVLCLEK 202
           ++L  L  AG+ P   +   +++I   I++     PGI C K+  +  SQL +I LC++ 
Sbjct: 142 NLLHALTNAGIKPD-DKFYEMKDIENTIKQVVGFAPGIECNKD-SSHNSQLYQIYLCVDT 201

Query: 203 DGATLIDCPTFVSSTC 211
             +  I+CP      C
Sbjct: 202 SASKFINCPVMPHGRC 213

[Close]

BLAST of CsaV3_3G036410 vs. TAIR 10
Match: AT2G39780.1 (ribonuclease 2 )

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-15
Identity = 59/192 (30.73%), Postives = 80/192 (41.67%), Query Frame = 0


Query: 23  FEFFQFVEQWGPNVC---------NTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLC-- 82
           F++F    QW    C         N   R S   T    +FTIHGLWP  +  +   C  
Sbjct: 32  FDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPT----QFTIHGLWPDYNDGSWPSCCY 91

Query: 83  QSITKYTKVLLLERQLNISWPDLK-------GGMNNEFWTHEWNFHGKCSDPPF-SLFQY 142
           +S  K  ++  L   L   WP L         G    FW HEW  HG CS P F   + Y
Sbjct: 92  RSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNY 151

Query: 143 FQMSLNLLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKS 196
           F  +LNL  K +V  +L  AG     S+   +  I+T IQ      P + C ++      
Sbjct: 152 FLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDA----- 211

The following BLAST results are available for this feature:

BLAST of CsaV3_3G036410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738547.1	4.6e-125	100.00	ribonuclease MC-like [Cucumis sativus] >XP_031739193.1 ribonuclease MC-like [Cuc...	[more]
KAE8651058.1	8.4e-111	89.35	hypothetical protein Csa_002465 [Cucumis sativus]	[more]
XP_031738690.1	8.4e-111	89.35	ribonuclease MC-like [Cucumis sativus]	[more]
XP_011651927.1	1.4e-52	49.78	ribonuclease MC [Cucumis sativus] >KGN58920.1 hypothetical protein Csa_001884 [C...	[more]
TYK25090.1	5.7e-51	49.32	S-RNase [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G036410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23540	2.9e-29	33.84	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
P42813	2.3e-26	32.09	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P80022	3.3e-25	30.41	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
Q38717	6.2e-24	32.62	Ribonuclease S-4 OS=Antirrhinum hispanicum OX=49039 GN=S4 PE=2 SV=1	[more]
Q40381	5.2e-23	33.51	Ribonuclease S-7 OS=Nicotiana alata OX=4087 PE=1 SV=1	[more]

BLAST of CsaV3_3G036410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN6	4.1e-111	89.35	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G745530 PE=3 SV=1	[more]
A0A0A0LAB0	6.6e-53	49.78	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G736680 PE=3 SV=1	[more]
A0A5D3DP91	2.8e-51	49.32	Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A6J1F837	1.9e-44	46.08	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1	[more]
A0A6J1EXD5	2.5e-44	44.55	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1	[more]

BLAST of CsaV3_3G036410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02990.1	1.6e-27	32.09	ribonuclease 1	[more]
AT1G14220.1	9.8e-25	33.84	Ribonuclease T2 family protein	[more]
AT1G26820.1	7.7e-22	33.16	ribonuclease 3	[more]
AT2G39780.1	1.4e-15	30.73	ribonuclease 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 21..216 e-value: 1.8E-47 score: 164.1
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 20..216
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 23..202 e-value: 1.6E-37 score: 129.5
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 13..213
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 13..213
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 54..61
IPR033697	Ribonuclease T2, eukaryotic	CDD	cd01061	RNase_T2_euk	coord: 23..216 e-value: 2.4806E-56 score: 175.598

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G036410.1	CsaV3_3G036410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding