CsaV3_3G034640 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G034640
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein of unknown function (DUF604)
Location	chr3: 29309790 .. 29310330 (+)
RNA-Seq Expression	CsaV3_3G034640
Synteny	CsaV3_3G034640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGATGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACGAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAGTCTGTAGGGTGGAGATCAGAAAGTACATGCTTGCGTTACGGTAATTGGTGTCCCCATTGACTAAACACTGCCTTCC

mRNA sequence

CTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGATGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACGAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAG

Coding sequence (CDS)

CTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGATGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACGAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAG

Protein sequence

LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATLTSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM*

Homology

[Close]

BLAST of CsaV3_3G034640 vs. NCBI nr
Match: KAE8651001.1 (hypothetical protein Csa_002597, partial [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 60
           LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL
Sbjct: 1   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 60

Query: 61  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 120
           TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG
Sbjct: 61  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 120

Query: 121 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 155
           LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM
Sbjct: 121 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 154

[Close]

BLAST of CsaV3_3G034640 vs. NCBI nr
Match: KAA0044111.1 (hypothetical protein E6C27_scaffold236G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 52/99 (52.53%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 2   FFPSSFPSPSNHSITAPT-----STVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDV 61
           FFPSSFPSP       P        +     DEHI HPLRDS V     K  K    +  
Sbjct: 6   FFPSSFPSPHKPLDNFPNFHSRCRVLRIATIDEHISHPLRDSGVPPRYGKTVKSYCELWT 65

Query: 62  --EATLTSHVGICMGGREAQRHVAHHLPTLKSLSRHVGF 94
              A+  SHV I MGGREAQRHVAHHLPTL+SLSRHVG+
Sbjct: 66  WKLASPASHVDIRMGGREAQRHVAHHLPTLQSLSRHVGY 104

[Close]

BLAST of CsaV3_3G034640 vs. NCBI nr
Match: XP_022983299.1 (uncharacterized protein LOC111481920 [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +FELG+ENVRWFVMGDDDTVFFVENLV VLGKYDHN
Sbjct: 141 KESFELGVENVRWFVMGDDDTVFFVENLVTVLGKYDHN 178

[Close]

BLAST of CsaV3_3G034640 vs. NCBI nr
Match: XP_028062819.1 (uncharacterized protein LOC114266130 [Camellia sinensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +FELGLENVRWFVMGDDDTVFF+ENLV VLGKYDHN
Sbjct: 163 KESFELGLENVRWFVMGDDDTVFFLENLVTVLGKYDHN 200

[Close]

BLAST of CsaV3_3G034640 vs. NCBI nr
Match: KAG6580525.1 (hypothetical protein SDJN03_20527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +FELG+ENVRWFVMGDDDTVFFVENLV VLGKYDHN
Sbjct: 141 KESFELGVENVRWFVMGDDDTVFFVENLVTVLGKYDHN 178

[Close]

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL
Match: A0A0A0LA38 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733990 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.1e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 60
           LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL
Sbjct: 25  LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 84

Query: 61  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 120
           TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG
Sbjct: 85  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 144

Query: 121 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 155
           LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM
Sbjct: 145 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 178

[Close]

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL
Match: A0A5A7TRA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004630 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 52/99 (52.53%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 2   FFPSSFPSPSNHSITAPT-----STVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDV 61
           FFPSSFPSP       P        +     DEHI HPLRDS V     K  K    +  
Sbjct: 6   FFPSSFPSPHKPLDNFPNFHSRCRVLRIATIDEHISHPLRDSGVPPRYGKTVKSYCELWT 65

Query: 62  --EATLTSHVGICMGGREAQRHVAHHLPTLKSLSRHVGF 94
              A+  SHV I MGGREAQRHVAHHLPTL+SLSRHVG+
Sbjct: 66  WKLASPASHVDIRMGGREAQRHVAHHLPTLQSLSRHVGY 104

[Close]

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL
Match: A0A6J1J6Y4 (uncharacterized protein LOC111481920 OS=Cucurbita maxima OX=3661 GN=LOC111481920 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.9e-11
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +FELG+ENVRWFVMGDDDTVFFVENLV VLGKYDHN
Sbjct: 141 KESFELGVENVRWFVMGDDDTVFFVENLVTVLGKYDHN 178

[Close]

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL
Match: A0A7J7HP17 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006592 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.9e-11
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +FELGLENVRWFVMGDDDTVFF+ENLV VLGKYDHN
Sbjct: 163 KESFELGLENVRWFVMGDDDTVFFLENLVTVLGKYDHN 200

[Close]

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL
Match: A0A6A4KQD6 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20330 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.9e-11
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           + +F+LGLENVRWFVMGDDDTVFFVENLV VLGKYDHN
Sbjct: 163 KESFQLGLENVRWFVMGDDDTVFFVENLVTVLGKYDHN 200

[Close]

BLAST of CsaV3_3G034640 vs. TAIR 10
Match: AT2G37730.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 114 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           +  FELGL +VRWF+MGDDDTVFFV+NL+ VL KYDHN
Sbjct: 179 KETFELGLTDVRWFIMGDDDTVFFVDNLITVLNKYDHN 216

[Close]

BLAST of CsaV3_3G034640 vs. TAIR 10
Match: AT3G11420.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 116 AFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 151
           ++ L L NVRWFVMGDDDTVFF ENLV VL KYDH
Sbjct: 175 SYRLNLPNVRWFVMGDDDTVFFTENLVKVLSKYDH 209

[Close]

BLAST of CsaV3_3G034640 vs. TAIR 10
Match: AT5G41460.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 118 ELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 152
           +LGL++VRWFVMGDDDTVF  ENL+ VL KYDHN
Sbjct: 198 KLGLKDVRWFVMGDDDTVFVAENLIRVLRKYDHN 231

[Close]

BLAST of CsaV3_3G034640 vs. TAIR 10
Match: AT1G07850.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-09
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 119 LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 151
           LG + VRWFVMGDDDTVF V+N+VNVL KYDH
Sbjct: 209 LGKKGVRWFVMGDDDTVFVVDNVVNVLSKYDH 240

[Close]

BLAST of CsaV3_3G034640 vs. TAIR 10
Match: AT4G23490.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 119 LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 151
           LG +NVRWFVMGDDDTVF ++NL+ VL KYDH
Sbjct: 200 LGPKNVRWFVMGDDDTVFVIDNLIRVLRKYDH 231

The following BLAST results are available for this feature:

BLAST of CsaV3_3G034640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651001.1	2.4e-83	100.00	hypothetical protein Csa_002597, partial [Cucumis sativus]	[more]
KAA0044111.1	3.7e-12	52.53	hypothetical protein E6C27_scaffold236G004630 [Cucumis melo var. makuwa]	[more]
XP_022983299.1	2.0e-10	86.84	uncharacterized protein LOC111481920 [Cucurbita maxima]	[more]
XP_028062819.1	2.0e-10	86.84	uncharacterized protein LOC114266130 [Camellia sinensis]	[more]
KAG6580525.1	2.0e-10	86.84	hypothetical protein SDJN03_20527, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_3G034640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G034640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA38	1.1e-83	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733990 PE=4 SV=1	[more]
A0A5A7TRA4	1.8e-12	52.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1J6Y4	9.9e-11	86.84	uncharacterized protein LOC111481920 OS=Cucurbita maxima OX=3661 GN=LOC111481920...	[more]
A0A7J7HP17	9.9e-11	86.84	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006592 PE=4 SV=1	[more]
A0A6A4KQD6	9.9e-11	86.84	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]

BLAST of CsaV3_3G034640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37730.1	4.0e-12	73.68	Protein of unknown function (DUF604)	[more]
AT3G11420.1	2.2e-10	77.14	Protein of unknown function (DUF604)	[more]
AT5G41460.1	6.3e-10	76.47	Protein of unknown function (DUF604)	[more]
AT1G07850.1	4.1e-09	78.13	Protein of unknown function (DUF604)	[more]
AT4G23490.1	7.0e-09	75.00	Protein of unknown function (DUF604)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.550.50		coord: 104..154 e-value: 6.1E-10 score: 40.7
None	No IPR available	PANTHER	PTHR10811:SF13	GLYCOSYLTRANSFERASE	coord: 115..151
None	No IPR available	PANTHER	PTHR10811	FRINGE-RELATED	coord: 115..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G034640.1	CsaV3_3G034640.1	mRNA