CsaV3_3G031830 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G031830
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	structure-specific endonuclease subunit slx1
Location	chr3: 27514352 .. 27518538 (+)
RNA-Seq Expression	CsaV3_3G031830
Synteny	CsaV3_3G031830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGAGTTTCGAACCCGCGCCGAAGAAGAGGAACCAAAGAAAGAATATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGATGTTGAGAAGTTATCTGGGTCATCTTCGATTAGCCTTAAAAAGCTGATATCCTCTACTGAATTTCATTGGCAAAGAAATTGGCACTTTGCAACTTTTAGATGTCCTTTATGCATAAAAGCTATACAAATGTTTCTTAATATCTTAAAGTTGTGTTCTTGTACAGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGGTATTCAATTAAATTACATACTTCTACAATCATTCTGCAATTTGGCCTTCAATTTCAAGGGGCATTGCTTGGTTTTTTGTGATTAGTTATTCTAGACATTAAGTTGCCTTGGACTTTTGAAAACATGAGTTGTCTCCTAGTTTCTTTGTTGTGGCTGTGATCTTGCTAAGTAAGTTAGATGACAATGGTCTAATCTATTTCATTTTTTCTGTTATTGTGAAAACTATTTCCTTGCGAAACAACATTTATTCACTGCTCTTCCCTGACATTTGTTATAAGATGCATCCTAACTACCGTGAGTTAGCTTAGTGGTTAATAAGGACCATGTAAGTAATTAAAGGACTCAGAGAGATAGGTTTAAGTCATGATATTCACCTACCTAAAATTTAAAGTCTATAAGTTAACTTGACAACCAAATGTAGCAAGTTTAGGATCGTGAGAGTAGTTGAGGTGCATATAAGTGAACAAAAAAACTCACTTTTTTTAAAAAACGGAAAATGCATCTTTGATGAGAGCTTAACATGTCTATGTGAGAGTTGAATGATAGGCCACAGCCTATAGTTTTGTTTGTCAACAACAAAGGGAAAGATTTTGGGAGCTTTCCCAATCTCTCCCAATACTCAAAAGAGAGTCCCAAGTACAAAATATCAGTGAAAAGATGATCAACACAAGTATTTAAAGAAAAAGCAAATGAAAAAAACTAAACCATCCTAAAAAATTTCTGGCCCGCACAACTAACAGAATTTCTTAAGGGCCCACAACACATATTTCCTCACTTAATTACCCTTTCTTATGCCTTCGACTATATACTTTCAAGCTTGGGGCCTTATAATTGAACTCCAGCATTACTCTTTAAATCCTTATATTTTCTTAAAAGCCTGAAAATACTTTACTTGGAGGAGAGAAACCTCAGAGAATTCCTCCTATTAAATCCGTGTATAAATGCTGATGTTTGCCCTTTTTATAAGAATAATGAAATAGTAGAATCAAAGCCAAATAAGACATCTCTTCAGTAAGTACTCTGCAGCAAAGTGTTCTAGAAGACCCACAATTCATGATGTATGTGCCAAGTGCGATAGTATTGGGTACTTGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGGTGACTTGGGATTTCATTTCATACTCCAAAAGACACAAGGAATAGGAAGAAACTTTAGGTAACCTAAAATTTTAACTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAATATAAGATGATTCAAGGTTGAAGACACTACTCTTGTGAGTTGTCAAGAAAATGCTGCAAAATCCTGTGCCAGAATACTGTAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGAAAACAGGTAAATACCTAGAATGCAGCATTCAAATTGTTTTGTATTCTTAACTTGCCGCCTTAAACAGCATTGGCAACTGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTAACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGTTTGGCTGCCACATCATCATATAATTCCATGGAAATGGTCTCCCATATTGGGTAAAATGCAACAGTATAGCTGCAAAAGGAGAGACAATGGTAACTAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTGGGAGAGGAGTTGCGAGGCTCCACTCCTTGTTTGGCCCAAGGAGTTTGTAGGCTTTGTAACTAAAACCCATCAATTTTGTGTCTTATTAAATCGTTACACTAATAGGTCCTAGGAGTTGACAACTCCAATCTTTACCCGAAACACCCCTTTCAAGTGAGTGTAAAGCATAAGAGAGTCGGGCAAAGGAGTGACTTAGCTTTAATTGAGAACTGTATTGTTTAGGATGGATGTAACTATTTAGTTAGACCAGCATGAGCGGTGTGACTTGCAGAGTATTTAGGAGTGAAATTTGGGCAAAGATAGGAAACCCATGGATTCTCCCTTTTTTGTATCATATAATATGAAACAGTTTCTATCATATAATTTTTTCTTCCCATAAAGTAGAGATCTAGAAACAAACTCATGAATTTCATTAATGTCGACAAGAAGAAGACAAATAAAGGCAATAGTAAACACAGATGATAAAATAATAGTTGAGTTCTTTTTCCTGTTTGGGAAAGGAACTGGTGCATTTTGCAGGTGAAATGCTCAAGGACAGTTTCAGGGCTCTATAATTCATGCCCTAAGTTTGTGTAATGAACCAACCATGATATTTATGATTTCCATGGCTGAGACAACTCCATGCATAAGAAATACTTGCTGATTGGATTGACTTATTTATGCAAAGAAACAAACTTATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTTTGGTAGTCATCAGCTCCTCAAATTATATGCATGTTAAGACTCCTACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTTAACATTTTTTTTCCTTCAGAAATGAAACAAGTTGCAATTTTAATCGCCATGTATGGTATCCCATTTATCATTTGCCTGACATTCGAAGGGCAGTAGTTGGGGTTGTACTTACTTCTGCCAAGGGAAATGAAGCAACTGGGAGATTTCTAGGACTCTCATAGTACCCTACTTCGTTTGTTCATACTATAAATTGGTTTTCATAAATGTCAGTAGATCCCACCCATTTTTGAAAAGTGTGTTGTTGTGGTATACAATAAATGGAGGGAGTTTTTTGTACTCCCATAGTAAAGAAAATTTTCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAGGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTGGTATCTATTGATTGTATGTTATGTGAGATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATGAACATTCTTCAAATTCATGTCCCAAAATCATCCTGCATAAATTTTATCAACACAATGATTTCATTTTTGAAACCTTACACTAAGTTTTTCTTTGGTTCATCAACTTGACACCAAATTTCTCGTGTTTTTCGACCAAGAAACGTTCTGTGAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCCTTGGTATGCAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCTATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGATTCTTTACATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATATATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATAAATATCTCATCTTTAAAATTGTGTTAAATGTAACATTTATGATTTCGTACTTTTTAATGGAAGACATGTCTATAATTTATATACATTTAAGCCAAAAATAAAGTAATTGAAATGTTGAAAGACCA

mRNA sequence

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCTATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA

Coding sequence (CDS)

ATGAGATTGCTCTCTCACACATTTCGTTGTGTAAAACCCCCAATTTCAAATCCACCACTATCCAAATCTTCTTCTTCCTCATCTAAGGATCCAACACTGATCGTTAAATCAGAGCCGAAGCCTAAGCTTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCTCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGAGGATGTGGGAAAGCTATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGGAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTGGATCCTTTCTGA

Protein sequence

MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF*

Homology

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BLAST of CsaV3_3G031830 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 7.3e-94
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

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BLAST of CsaV3_3G031830 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 2.2e-82
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

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BLAST of CsaV3_3G031830 vs. NCBI nr
Match: XP_038903984.1 (structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida])

HSP 1 Score: 305.1 bits (780), Expect = 3.9e-79
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFR  KP  SN  LSKSSSSS+KDP LIVKSEPKP  KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVKSEPKP--KQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHGFKDQ QACEFESKWK+VSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQACEFESKWKEVSRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISY+KKE+D+GK +DDQTLRLLKHR+RALGKVKCLFDCSQFEF+WKLDPF
Sbjct: 121 ISYKKKEDDMGKQVDDQTLRLLKHRQRALGKVKCLFDCSQFEFNWKLDPF 168

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BLAST of CsaV3_3G031830 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 4.0e-68
Identity = 134/169 (79.29%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEP--KKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHGFKDQSQACEFESKWK++ RK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           + + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Sbjct: 121 MCHMRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of CsaV3_3G031830 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 5.3e-68
Identity = 134/169 (79.29%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEP--KKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHGFKDQSQACEFESKWK++ RK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           + + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Sbjct: 121 MCHLRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

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BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 46  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQ 105
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 106 SQACEFESKWK 116
             A +FE  W+
Sbjct: 63  IAALQFEWVWQ 73

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BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 46  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKD 105
           +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 106 QSQACEFESKWKKV 118
           +  A +FE  W+ +
Sbjct: 67  KVSALKFEWNWQNL 80

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BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot
Match: B6QFH5 (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 39  PKPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICAC 98
           PKP    +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW    
Sbjct: 12  PKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMIT 71

Query: 99  TIHGFKDQSQACEFESKWKKV 118
            I GF  ++ A +FE  W+ V
Sbjct: 72  IIEGFTSRTGALQFEWSWQHV 92

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot
Match: B8MDD1 (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 34/80 (42.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 40  KPKLKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACT 99
           KP    +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 100 IHGFKDQSQACEFESKWKKV 118
           + GF  ++ A +FE  W+ V
Sbjct: 73  VEGFPSRTGALQFEWSWQHV 92

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot
Match: A8PWH1 (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) OX=425265 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 49  YLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQAC 108
           Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF  +  A 
Sbjct: 18  YCLRSLSRPNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFPSKLAAL 77

Query: 109 EFESKWKK 117
           +FE  W+K
Sbjct: 78  QFEWSWQK 85

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BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.5e-94
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSPIKT
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQSQACEFESKWKKVSRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68
Identity = 134/169 (79.29%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFR  K PIS+P +SKSSSSS+K PTLIVKSEP+P  K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVKSEPEP--KKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHGFKDQSQACEFESKWK++ RK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDP 170
           + + +KEE     +DD TLRLLK R+RALGKVK LFDC+QFEFDW+LDP
Sbjct: 121 MCHMRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.6e-68
Identity = 133/170 (78.24%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60
           MRLLS TFR  K PIS+P +SKSSSSS+K PTL +KSE  P+ K+WCVYLIISSN PIKT
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIKSE--PETKKWCVYLIISSNPPIKT 60

Query: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120
           YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC IHGFK+QSQACEFESKWK++ RK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEICRK 120

Query: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           +S+ +KEE     +DDQTLRLLK R+RALGKVK LFDC+QFEFDW+LDPF
Sbjct: 121 MSHMRKEE-----VDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPF 163

[Close]

BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.0e-64
Identity = 128/173 (73.99%), Postives = 147/173 (84.97%), Query Frame = 0


Query: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSP 60
           MRLLSHTFRC K PISNP    SSSSS+KDP   TL  +S+ KP  K WCVYLIISSNSP
Sbjct: 33  MRLLSHTFRCHKSPISNP--KPSSSSSTKDPSAATLSFESQLKP--KPWCVYLIISSNSP 92

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKV 120
            KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQSQACEFESKWK+V
Sbjct: 93  FKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEV 152

Query: 121 SRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 171
           SRKI++++K++D  +  D+Q LRLLK+R+RAL KVK +FDCS+FEFD +LDPF
Sbjct: 153 SRKIAHKRKKDDEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDGQLDPF 201

[Close]

BLAST of CsaV3_3G031830 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 167.9 bits (424), Expect = 6.9e-42
Identity = 93/173 (53.76%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 2   RLLSHTFRCVKPPISNP--PLSKSSSSSSKDPTLIVKSEPK-----PKLKQWCVYLIISS 61
           RLLS TF  VK   SNP  P  K+  +S     +   S P+     PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKW 121
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF   SQA  FESKW
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 KKVSRKISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKL 168
           K  +RK+   KK+ED+      Q+  LL+HR RAL KV+   DCS  E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of CsaV3_3G031830 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-08
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 59  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWK 116
           +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+GF     A +FE  W+
Sbjct: 43  QTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQ 99

The following BLAST results are available for this feature:

BLAST of CsaV3_3G031830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151512.1	7.3e-94	100.00	structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot...	[more]
XP_008461838.1	2.2e-82	90.59	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846...	[more]
XP_038903984.1	3.9e-79	87.06	structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]	[more]
XP_022934184.1	4.0e-68	79.29	structure-specific endonuclease subunit slx1 [Cucurbita moschata]	[more]
KAG7018060.1	5.3e-68	79.29	slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_3G031830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6JY16	5.0e-13	47.89	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
Q9P7M3	7.3e-12	44.59	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
B6QFH5	1.8e-10	44.44	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
B8MDD1	4.0e-10	42.50	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
A8PWH1	1.5e-09	44.12	Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC ...	[more]

BLAST of CsaV3_3G031830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9	3.5e-94	100.00	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A1S3CFH5	1.1e-82	90.59	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1F1V2	2.0e-68	79.29	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J5C9	2.6e-68	78.24	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1DGL6	5.0e-64	73.99	structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of CsaV3_3G031830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	6.9e-42	53.76	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	1.3e-08	43.86	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 45..120 e-value: 1.1E-15 score: 57.7
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 44..125 score: 18.084717
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 41..148 e-value: 1.1E-24 score: 88.3
IPR035901	GIY-YIG endonuclease superfamily	SUPERFAMILY	82771	GIY-YIG endonuclease	coord: 45..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..33
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 20..169
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 20..169
None	No IPR available	CDD	cd10455	GIY-YIG_SLX1	coord: 46..118 e-value: 1.9831E-35 score: 116.563

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G031830.1	CsaV3_3G031830.1	mRNA