CsaV3_3G031340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G031340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	leucine-rich repeat extensin-like protein 3
Location	chr3: 27036393 .. 27036851 (-)
RNA-Seq Expression	CsaV3_3G031340
Synteny	CsaV3_3G031340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCCAGATGGAGCCAATCCCACTCTCTCGCCGCCGAGACCTTCTTCACCGCCTCCCTCTCCCTCTCCGCCACCACCGCCGTTGCCACCACCTCCCCCACCACCCCGCCTCCGCCTCCAATCACCCCACCGCCTCCATCGCCATCTCCTCCCCCATTTTCCCCACCGCCTCCTCCTCCGCCGCATCGCCATCGTCGTAATCCACCGCCTCCTCTTGCATCATCCGTGGAGAGAAAGAAAAAACGACCACCAGTCCCTCCGAAAAACATCAATACTAATCAAGGGTCGAAGCGAAGTCTCAACAAGGGGAAGAAAGTTGGGCTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGTTTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAGGATCGATATGAAGGCTTTTCATGA

mRNA sequence

TGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCCAGATGGAGCCAATCCCACTCTCTCGCCGCCGAGACCTTCTTCACCGCCTCCCTCTCCCTCTCCGCCACCACCGCCGTTGCCACCACCTCCCCCACCACCCCGCCTCCGCCTCCAATCACCCCACCGCCTCCATCGCCATCTCCTCCCCCATTTTCCCCACCGCCTCCTCCTCCGCCGCATCGCCATCGTCGTAATCCACCGCCTCCTCTTGCATCATCCGTGGAGAGAAAGAAAAAACGACCACCAGTCCCTCCGAAAAACATCAATACTAATCAAGGGTCGAAGCGAAGTCTCAACAAGGGGAAGAAAGTTGGGCTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGTTTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAGGATCGATATGAAGGCTTTTCATGA

Coding sequence (CDS)

TGTTTTGTCGCTTCTTGTCGAGTCTCAGACTCCAGATGGAGCCAATCCCACTCTCTCGCCGCCGAGACCTTCTTCACCGCCTCCCTCTCCCTCTCCGCCACCACCGCCGTTGCCACCACCTCCCCCACCACCCCGCCTCCGCCTCCAATCACCCCACCGCCTCCATCGCCATCTCCTCCCCCATTTTCCCCACCGCCTCCTCCTCCGCCGCATCGCCATCGTCGTAATCCACCGCCTCCTCTTGCATCATCCGTGGAGAGAAAGAAAAAACGACCACCAGTCCCTCCGAAAAACATCAATACTAATCAAGGGTCGAAGCGAAGTCTCAACAAGGGGAAGAAAGTTGGGCTGTTCTTTGTAGGTATTGCCGCAGTCCTCCAAATCTGTGTGGTGGGTTTTTTGGTATTCAAGAGACGGCAGCTTCTAAGAGTCAAGGATCGATATGAAGGCTTTTCATGA

Protein sequence

CFVASCRVSDSRWSQSHSLAAETFFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS*

Homology

[Close]

BLAST of CsaV3_3G031340 vs. NCBI nr
Match: KAE8650907.1 (hypothetical protein Csa_002672, partial [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   CFVASCRVSDSRWSQSHSLAAETFFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPP 60
           CFVASCRVSDSRWSQSHSLAAETFFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPP
Sbjct: 1   CFVASCRVSDSRWSQSHSLAAETFFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPP 60

Query: 61  PFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFV 120
           PFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFV
Sbjct: 61  PFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFV 120

Query: 121 GIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           GIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 121 GIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 152

[Close]

BLAST of CsaV3_3G031340 vs. NCBI nr
Match: XP_011651738.2 (LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-45
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 42  PTTPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 101
           P   PPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT
Sbjct: 60  PPPXPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 119

Query: 102 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 120 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170

[Close]

BLAST of CsaV3_3G031340 vs. NCBI nr
Match: XP_008463997.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 42  PTTPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 101
           P  PPPP I  PPPSPSPPPFSP PPPPPHRHRR+PPPPLASS+ERKKKRPPVPPKNINT
Sbjct: 60  PPPPPPPRIISPPPSPSPPPFSPSPPPPPHRHRRSPPPPLASSMERKKKRPPVPPKNINT 119

Query: 102 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           NQ SKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 120 NQASKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170

[Close]

BLAST of CsaV3_3G031340 vs. NCBI nr
Match: XP_038900729.1 (proline-rich receptor-like protein kinase PERK2 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28
Identity = 95/116 (81.90%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 42  PTTPPPPPITPPPP---SPSPPPFSPPPP-PPPHRHRRNPPPPLASSVERKKKRPPVPPK 101
           P  PPPPPI  PPP   SPSPPPFSPPPP P P   RR PPP  AS  E  KK PPVPPK
Sbjct: 62  PPPPPPPPILSPPPPPLSPSPPPFSPPPPFPSPLPPRRRPPPFHAS--ENGKKSPPVPPK 121

Query: 102 NI-NTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           NI NTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 122 NINNTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 175

[Close]

BLAST of CsaV3_3G031340 vs. NCBI nr
Match: XP_022998566.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-19
Identity = 79/119 (66.39%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 41  SPTTPPPPPITPPPPSP----SPPPFSPPPPPPPH-RHRRNP-PPPLASSVERKKKRPPV 100
           SP   PPPPI  PPP P    SPPP  PPPP PP  +HR  P PPP+ +S +  KK P V
Sbjct: 83  SPNFVPPPPIFVPPPPPASPSSPPPIFPPPPSPPSLQHRSTPLPPPIPASSDANKKPPEV 142

Query: 101 PPKNINTN-QGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
              N + N +GSKRSLN GKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR KD+Y+GFS
Sbjct: 143 SRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDQYDGFS 201

[Close]

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL
Match: A0A0A0LC75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 42  PTTPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 101
           P  PPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT
Sbjct: 60  PPPPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 119

Query: 102 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 120 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170

[Close]

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL
Match: A0A1S3CKG6 (leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501988 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.3e-41
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 42  PTTPPPPPITPPPPSPSPPPFSPPPPPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINT 101
           P  PPPP I  PPPSPSPPPFSP PPPPPHRHRR+PPPPLASS+ERKKKRPPVPPKNINT
Sbjct: 60  PPPPPPPRIISPPPSPSPPPFSPSPPPPPHRHRRSPPPPLASSMERKKKRPPVPPKNINT 119

Query: 102 NQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           NQ SKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS
Sbjct: 120 NQASKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 170

[Close]

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL
Match: A0A6J1KAI1 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111493162 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 79/119 (66.39%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 41  SPTTPPPPPITPPPPSP----SPPPFSPPPPPPPH-RHRRNP-PPPLASSVERKKKRPPV 100
           SP   PPPPI  PPP P    SPPP  PPPP PP  +HR  P PPP+ +S +  KK P V
Sbjct: 83  SPNFVPPPPIFVPPPPPASPSSPPPIFPPPPSPPSLQHRSTPLPPPIPASSDANKKPPEV 142

Query: 101 PPKNINTN-QGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
              N + N +GSKRSLN GKKVGLFFVGIAAVLQICVVGFLVFKRRQLLR KD+Y+GFS
Sbjct: 143 SRNNNSHNIEGSKRSLNMGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRFKDQYDGFS 201

[Close]

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL
Match: A0A6J1G9A4 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111452141 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.5e-19
Identity = 81/154 (52.60%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 36  AVATTSPTTPPPPPI----TPPPPSPSPPPFSPP-------------PPPPPH------- 95
           A+ ++SP  PPPPP     +PPPP P PPP SPP             PPPPP        
Sbjct: 32  AIPSSSPPPPPPPPSPPPPSPPPPPPPPPPLSPPQSPPPPSPSPNFVPPPPPASSSPPPP 91

Query: 96  -----------RHRRNPPPPLASSVERKKKRPPVPPKNINTN--QGSKRSLNKGKKVGLF 153
                      +HR  PPPP   +     K+PP   +N N++  +GSKRSLN GKKVGLF
Sbjct: 92  IFPPPPSLPSLQHRSTPPPPPIPASSDANKKPPEVSRNNNSHNIEGSKRSLNMGKKVGLF 151

[Close]

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL
Match: A0A6J1DGD7 (proline-rich receptor-like protein kinase PERK9 OS=Momordica charantia OX=3673 GN=LOC111020262 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-16
Identity = 73/116 (62.93%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 41  SPTTPPPPPITPPPPSP-SPPPFSPPPPPPPHRHRRNPPPPLASSVERKK--KRPPVPPK 100
           SP+ PPP P +PP PSP SPPP SP  PPPP R R + PPP  +S  R +  +      K
Sbjct: 50  SPSLPPPSPPSPPQPSPLSPPPPSPVSPPPPRRRRSSSPPPSRASSARNENPQLGGTHKK 109

Query: 101 NINTNQGSKRS-LNKGKKVGLFFVGIAAVLQICVVGFLVFKRRQLLRVKDRYEGFS 153
           N   NQ  KRS LNKGK+VGLFFVGIAAVLQ+CVVGFLVFKRRQLLR K++YE FS
Sbjct: 110 NNKKNQAEKRSRLNKGKQVGLFFVGIAAVLQVCVVGFLVFKRRQLLRFKEQYESFS 165

[Close]

BLAST of CsaV3_3G031340 vs. TAIR 10
Match: AT1G54215.1 (proline-rich family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-08
Identity = 60/150 (40.00%), Postives = 74/150 (49.33%), Query Frame = 0


Query: 24  FFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPPPFSPPP----------------- 83
           FFT    L   +      P +PPPPP  PPPP P PPP  PPP                 
Sbjct: 21  FFTIHCFLLVQSQDPPLFPQSPPPPPPPPPPPPPPPPPPPPPPPAVNMSVETGIPPPPPP 80

Query: 84  ----------PPPPHRHRRNPPPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVG 143
                     PPPP    R+ PPP        ++ PP PP+  +  +  +  LNKGK VG
Sbjct: 81  VTDMIKPLSSPPPPQPPPRSQPPPKPPQKNLPRRHPP-PPR--SPEKPKRDGLNKGKTVG 140

Query: 144 LFFVGIAAVLQICVVGFLVFKRRQLLRVKD 147
           L FVG+ A+LQ+ VV FLVFKR+QLL +KD
Sbjct: 141 LVFVGLIAMLQVIVVVFLVFKRKQLLSLKD 167

[Close]

BLAST of CsaV3_3G031340 vs. TAIR 10
Match: AT1G72600.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04
Identity = 56/132 (42.42%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 24  FFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPPPF------SPPPPPPPHRHRRNP 83
           FF  S S+   +    +S  TPPPPP  PPP S SPPP       S       H HRR  
Sbjct: 17  FFFISASIFVDSKSQDSSSITPPPPP-PPPPLSLSPPPSPITAIESNKAIHEKHHHRRK- 76

Query: 84  PPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFK 143
                    R  K PP PP         K+ +N GK VGLFF G+AA LQ+ V  FL+FK
Sbjct: 77  ----KWRQRRHHKHPPPPPP-------KKQKVNTGKTVGLFFAGVAAALQVVVAAFLIFK 135

Query: 144 RRQ-LLRVKDRY 149
           RRQ LL++ DR+
Sbjct: 137 RRQLLLKINDRH 135

[Close]

BLAST of CsaV3_3G031340 vs. TAIR 10
Match: AT1G72600.2 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-04
Identity = 56/132 (42.42%), Postives = 67/132 (50.76%), Query Frame = 0


Query: 24  FFTASLSLSATTAVATTSPTTPPPPPITPPPPSPSPPPF------SPPPPPPPHRHRRNP 83
           FF  S S+   +    +S  TPPPPP  PPP S SPPP       S       H HRR  
Sbjct: 17  FFFISASIFVDSKSQDSSSITPPPPP-PPPPLSLSPPPSPITAIESNKAIHEKHHHRRK- 76

Query: 84  PPPLASSVERKKKRPPVPPKNINTNQGSKRSLNKGKKVGLFFVGIAAVLQICVVGFLVFK 143
                    R  K PP PP         K+ +N GK VGLFF G+AA LQ+ V  FL+FK
Sbjct: 77  ----KWRQRRHHKHPPPPPP-------KKQKVNTGKTVGLFFAGVAAALQVVVAAFLIFK 135

Query: 144 RRQ-LLRVKDRY 149
           RRQ LL++ DR+
Sbjct: 137 RRQLLLKINDRH 135

The following BLAST results are available for this feature:

BLAST of CsaV3_3G031340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650907.1	4.3e-69	100.00	hypothetical protein Csa_002672, partial [Cucumis sativus]	[more]
XP_011651738.2	5.6e-45	97.30	LOW QUALITY PROTEIN: basic proline-rich protein [Cucumis sativus]	[more]
XP_008463997.1	1.1e-40	91.89	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo]	[more]
XP_038900729.1	2.8e-28	81.90	proline-rich receptor-like protein kinase PERK2 [Benincasa hispida]	[more]
XP_022998566.1	3.1e-19	66.39	leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]	[more]

BLAST of CsaV3_3G031340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G031340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC75	3.2e-46	98.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651880 PE=4 SV=1	[more]
A0A1S3CKG6	5.3e-41	91.89	leucine-rich repeat extensin-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103501...	[more]
A0A6J1KAI1	1.5e-19	66.39	leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1G9A4	7.5e-19	52.60	leucine-rich repeat extensin-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1DGD7	3.5e-16	62.93	proline-rich receptor-like protein kinase PERK9 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CsaV3_3G031340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54215.1	2.6e-08	40.00	proline-rich family protein	[more]
AT1G72600.1	1.0e-04	42.42	hydroxyproline-rich glycoprotein family protein	[more]
AT1G72600.2	1.0e-04	42.42	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..77
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 40..151
None	No IPR available	PANTHER	PTHR36721:SF1	PROLINE-RICH FAMILY PROTEIN	coord: 40..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G031340.1	CsaV3_3G031340.1	mRNA