CsaV3_3G028440 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G028440
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 24857175 .. 24857371 (+)
RNA-Seq Expression	CsaV3_3G028440
Synteny	CsaV3_3G028440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCACAATCACCAAATCCAGCAAACCGCCAGTTCTCCATTTCGCAAGAATCACTCAGAAATCCATCTCCAAATTCCAAAATCAACAAGGAGAAAAAAAACACCGTCTCCAATGGTCAAATAGCTCGTTCGACTTCGACTATGAATTCCGATGCGAACAATAAACAATCGAAATTACTGCGAAAAAACGCAAA

mRNA sequence

ATGGAATCACAATCACCAAATCCAGCAAACCGCCAGTTCTCCATTTCGCAAGAATCACTCAGAAATCCATCTCCAAATTCCAAAATCAACAAGGAGAAAAAAAACACCGTCTCCAATGGTCAAATAGCTCGTTCGACTTCGACTATGAATTCCGATGCGAACAATAAACAATCGAAATTACTGCGAAAAAACGCAAA

Coding sequence (CDS)

ATGGAATCACAATCACCAAATCCAGCAAACCGCCAGTTCTCCATTTCGCAAGAATCACTCAGAAATCCATCTCCAAATTCCAAAATCAACAAGGAGAAAAAAAACACCGTCTCCAATGGTCAAATAGCTCGTTCGACTTCGACTATGAATTCCGATGCGAACAATAAACAATCGAAATTACTGCGAAAAAACGCAAA

Protein sequence

MESQSPNPANRQFSISQESLRNPSPNSKINKEKKNTVSNGQIARSTSTMNSDANNKQSKLLRKNAX

Homology

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BLAST of CsaV3_3G028440 vs. NCBI nr
Match: KAE8650831.1 (hypothetical protein Csa_017534, partial [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 5.8e-23
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQSPNPANRQFSISQESLRNPSPNSKINKEKKNTVSNGQIARSTSTMNSDANNKQSKL 60
          MESQSPNPANRQFSISQESLRNPSPNSKINKEKKNTVSNGQIARSTSTMNSDANNKQSKL
Sbjct: 1  MESQSPNPANRQFSISQESLRNPSPNSKINKEKKNTVSNGQIARSTSTMNSDANNKQSKL 60

Query: 61 LRKNA 66
          LRKNA
Sbjct: 61 LRKNA 65

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650831.1	5.8e-23	100.00	hypothetical protein Csa_017534, partial [Cucumis sativus]	[more]

BLAST of CsaV3_3G028440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028440.1	CsaV3_3G028440.1	mRNA