CsaV3_3G028390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G028390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 24818674 .. 24818856 (-)
RNA-Seq Expression	CsaV3_3G028390
Synteny	CsaV3_3G028390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAATATTGGCGAGAAAGAGAAAAAGGGTGGAAGGCGGGGTGATGAGTTTCCAAAAGAGAGGCCGACAAGGTGGGGCCGGCATCCCATCACATTGCATGACACGTCAGAAGTTGAGACGCATGGGGACCCACGATTCCTCAAAGGACGAAATCCACCCCTGGACCCCACTGGACATG

mRNA sequence

ATGAAAGAAATATTGGCGAGAAAGAGAAAAAGGGTGGAAGGCGGGGTGATGAGTTTCCAAAAGAGAGGCCGACAAGGTGGGGCCGGCATCCCATCACATTGCATGACACGTCAGAAGTTGAGACGCATGGGGACCCACGATTCCTCAAAGGACGAAATCCACCCCTGGACCCCACTGGACATG

Coding sequence (CDS)

ATGAAAGAAATATTGGCGAGAAAGAGAAAAAGGGTGGAAGGCGGGGTGATGAGTTTCCAAAAGAGAGGCCGACAAGGTGGGGCCGGCATCCCATCACATTGCATGACACGTCAGAAGTTGAGACGCATGGGGACCCACGATTCCTCAAAGGACGAAATCCACCCCTGGACCCCACTGGACATG

Protein sequence

MKEILARKRKRVEGGVMSFQKRGRQGGAGIPSHCMTRQKLRRMGTHDSSKDEIHPWTPLDM

Homology

[Close]

BLAST of CsaV3_3G028390 vs. NCBI nr
Match: KAE8650829.1 (hypothetical protein Csa_017481, partial [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MKEILARKRKRVEGGVMSFQKRGRQGGAGIPSHCMTRQKLRRMGTHDSSKDEIHPWTPLD 60
          MKEILARKRKRVEGGVMSFQKRGRQGGAGIPSHCMTRQKLRRMGTHDSSKDEIHPWTPLD
Sbjct: 1  MKEILARKRKRVEGGVMSFQKRGRQGGAGIPSHCMTRQKLRRMGTHDSSKDEIHPWTPLD 60

Query: 61 M 62
          M
Sbjct: 61 M 61

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650829.1	1.8e-26	100.00	hypothetical protein Csa_017481, partial [Cucumis sativus]	[more]

BLAST of CsaV3_3G028390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028390.1	CsaV3_3G028390.1	mRNA