CsaV3_3G028250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G028250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 24721123 .. 24721994 (-)
RNA-Seq Expression	CsaV3_3G028250
Synteny	CsaV3_3G028250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGGTATGAATTTACTTCTTATTCTTTTGATTTCTTAGATATATAATTTCATTTCCATTTTCACCTGGTCCTTTCTTCTTTTGGGATTCAACCATTTGTATGTTCTTATTTCATTTTTATTTTCTTAATTTTTTTTTTTACAATGTGTTGTCCAAGTCAGTTTTTTCAGCTACTTCATCGTTTCCTTCAATAATTAGTCTACAGGTTTTTATATTTTACTTGTTTCCTTTGAAATTCTTGTTAATTTGGCTGGTGTGTGTGTGTGTTATGCTGAAGGTGAAGTTGTAGAATTTTTGTTTTTCAATTTATTATAATTGGAAGAGCTTTGACTTCATGTCATCTGATGGTAAGAAGCTCACAATTTGGGTTTTATTGAATTCATATGGGGAAAAGGTTGTTTCTGCTTCTGTTAGTAATCAAATTGTTAGGTTTTTGGAACTTAGCTCCAAATCTAATCATATGAACTTTGGTGATTGATGGTTTTTGTATATCCTTTTCTGGATGAGATGTATATGCTTTGGTTCATTAATTTTGTTTCTCTGGATGTATTTGTATATATGTCTTCCCTCTATAGATGTCAAGATTGATGTTTTCTCTTTCCCTCTTTCCATTTCTAGATATTGGGCTTAGCGATAAGCTGA

mRNA sequence

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGATATTGGGCTTAGCGATAAGCTGA

Coding sequence (CDS)

ATGACGACAAAGCCGAACCATCACGGCCGTCACCTCACCCGCTCTGCCGGTCACATATTTATATCACCCCCCCCGTCACCCAAGAGCTACATCTTCCCATTTCTCACCGCCGAATCATTTTGTGGGTTTTCAGATTCTATTCCCCAACTCTTTTTCTTCAAAGGCTTCTTGCTTTTTTCTTCTTCTTTTTTGTTTCTTCTTCTCCTTTCTACACCCTTTCTCTTTGGAATTTGGATATTGGGCTTAGCGATAAGCTGA

Protein sequence

MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFSSSFLFLLLLSTPFLFGIWILGLAIS*

Homology

[Close]

BLAST of CsaV3_3G028250 vs. NCBI nr
Match: KGN58291.1 (hypothetical protein Csa_017580 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 9.9e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS 60
          MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS 60

Query: 61 SSFLFLLLLSTPFLFGIWILGLAIS 86
          SSFLFLLLLSTPFLFGIWILGLAIS
Sbjct: 61 SSFLFLLLLSTPFLFGIWILGLAIS 85

[Close]

BLAST of CsaV3_3G028250 vs. ExPASy TrEMBL
Match: A0A0A0LDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.8e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS 60
          MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS
Sbjct: 1  MTTKPNHHGRHLTRSAGHIFISPPPSPKSYIFPFLTAESFCGFSDSIPQLFFFKGFLLFS 60

Query: 61 SSFLFLLLLSTPFLFGIWILGLAIS 86
          SSFLFLLLLSTPFLFGIWILGLAIS
Sbjct: 61 SSFLFLLLLSTPFLFGIWILGLAIS 85

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58291.1	9.9e-39	100.00	hypothetical protein Csa_017580 [Cucumis sativus]	[more]

BLAST of CsaV3_3G028250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDX1	4.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608700 PE=4 SV=1	[more]

BLAST of CsaV3_3G028250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028250.1	CsaV3_3G028250.1	mRNA