CsaV3_3G026780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G026780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	pectinesterase inhibitor 6-like
Location	chr3: 23052373 .. 23052840 (+)
RNA-Seq Expression	CsaV3_3G026780
Synteny	CsaV3_3G026780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACCCACTCCGCCAAAGTAACACGACACCAAGATCTCTGCAAGCACCGTCGGGCCCTCTTCCTTCATTTTCACTCCCCTCTTCTTCCTTCTCCCATGGGTAAGCCACTTCACCAAAGTAACACGGCACCAAGATCGATCCCTACAAGCACCGCCAAGTGCAACCCCACAAAATGGGCTCAAGCAGGGGTGTTGGTGCGATAGCAAAGGCAAAAAAAGTGGCAGGACTCCTGGGGAGGTTGACGAACAACAAGAGGATGAAGGGGAGAAACAAGGCAATCCAAGCTGTGTGGAGGTGTTTTGGAGCCGTCATTGATGAATTTCACAGGCAGAGAAATTTTGACGCACAAATGGGGGATCTTACGACGTGGGTCAGAGCTATGCTAATGGATGAAGATACTTGCATCAGACGATTTAAGGGTGAAAGAGGAAAAGTAGTGAATTTTCTAAGGAATCAAGGGTGA

mRNA sequence

ATGGCTAACCCACTCCGCCAAAGTAACACGACACCAAGATCTCTGCAAGCACCGTCGGGCCCTCTTCCTTCATTTTCACTCCCCTCTTCTTCCTTCTCCCATGGGGGTGTTGGTGCGATAGCAAAGGCAAAAAAAGTGGCAGGACTCCTGGGGAGGTTGACGAACAACAAGAGGATGAAGGGGAGAAACAAGGCAATCCAAGCTGTGTGGAGGTGTTTTGGAGCCGTCATTGATGAATTTCACAGGCAGAGAAATTTTGACGCACAAATGGGGGATCTTACGACGTGGGTCAGAGCTATGCTAATGGATGAAGATACTTGCATCAGACGATTTAAGGGTGAAAGAGGAAAAGTAGTGAATTTTCTAAGGAATCAAGGGTGA

Coding sequence (CDS)

ATGGCTAACCCACTCCGCCAAAGTAACACGACACCAAGATCTCTGCAAGCACCGTCGGGCCCTCTTCCTTCATTTTCACTCCCCTCTTCTTCCTTCTCCCATGGGGGTGTTGGTGCGATAGCAAAGGCAAAAAAAGTGGCAGGACTCCTGGGGAGGTTGACGAACAACAAGAGGATGAAGGGGAGAAACAAGGCAATCCAAGCTGTGTGGAGGTGTTTTGGAGCCGTCATTGATGAATTTCACAGGCAGAGAAATTTTGACGCACAAATGGGGGATCTTACGACGTGGGTCAGAGCTATGCTAATGGATGAAGATACTTGCATCAGACGATTTAAGGGTGAAAGAGGAAAAGTAGTGAATTTTCTAAGGAATCAAGGGTGA

Protein sequence

MANPLRQSNTTPRSLQAPSGPLPSFSLPSSSFSHGGVGAIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQG*

Homology

[Close]

BLAST of CsaV3_3G026780 vs. NCBI nr
Match: KAE8650765.1 (hypothetical protein Csa_017530 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 5.3e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MANPLRQSNTTPRSLQAPSGPLPSFSLPSSSFSHGGVGAIAKAKKVAGLLGRLTNNKRMK 60
           MANPLRQSNTTPRSLQAPSGPLPSFSLPSSSFSHGGVGAIAKAKKVAGLLGRLTNNKRMK
Sbjct: 1   MANPLRQSNTTPRSLQAPSGPLPSFSLPSSSFSHGGVGAIAKAKKVAGLLGRLTNNKRMK 60

Query: 61  GRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVN 120
           GRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVN
Sbjct: 61  GRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVN 120

Query: 121 FLRNQG 127
           FLRNQG
Sbjct: 121 FLRNQG 126

[Close]

BLAST of CsaV3_3G026780 vs. NCBI nr
Match: KAE8646342.1 (hypothetical protein Csa_016554 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 65/109 (59.63%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVAGLLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAGLLGRLKNNKRMKGRNRA--AVLDCVEVFEAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFDAQMGDLTTWV A L DEDTC+  F+GE GKVV  LRN+
Sbjct: 122 VLRRLSRRNFDAQMGDLTTWVSAALTDEDTCVEGFEGEEGKVVTLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. NCBI nr
Match: XP_011659361.1 (pectinesterase inhibitor 6 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 65/109 (59.63%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVAGLLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAGLLGRLKNNKRMKGRNRA--AVLDCVEVFEAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFDAQMGDLTTWV A L DEDTC+  F+GE GKVV  LRN+
Sbjct: 122 VLRRLSRRNFDAQMGDLTTWVSAALTDEDTCVEGFEGEEGKVVTLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. NCBI nr
Match: XP_008451567.1 (PREDICTED: 21 kDa protein [Cucumis melo] >KAA0067994.1 21 kDa protein [Cucumis melo var. makuwa] >TYK18133.1 21 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-22
Identity = 64/109 (58.72%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVA LLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAALLGRLKNNKRMKGRNRA--AVLDCVEVFDAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFD+QMGDLTTWV A L DEDTC+  F+GERGKVV+ LRN+
Sbjct: 122 VLRRLSRRNFDSQMGDLTTWVSAALTDEDTCVEGFEGERGKVVSLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. NCBI nr
Match: XP_038896715.1 (pectinesterase inhibitor 6-like [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AK VAGLLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  AKWARAGVSVTITEAKTVAGLLGRLKNNKRMKGRNRA--AVSDCVEVFEAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 + NFDAQ+GDLTTWV A L DEDTC+  F+GERGK+VN +RN+
Sbjct: 122 VLRRLSRSNFDAQIGDLTTWVSAALTDEDTCVEGFEGERGKLVNLIRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL
Match: A0A0A0LDI5 (PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G560260 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 33  SHGGVGAIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGD 92
           S  GVGAIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGD
Sbjct: 3   SSRGVGAIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRCFGAVIDEFHRQRNFDAQMGD 62

Query: 93  LTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQG 127
           LTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQG
Sbjct: 63  LTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQG 96

[Close]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL
Match: A0A0A0KAX0 (PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G397050 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22
Identity = 65/109 (59.63%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVAGLLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAGLLGRLKNNKRMKGRNRA--AVLDCVEVFEAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFDAQMGDLTTWV A L DEDTC+  F+GE GKVV  LRN+
Sbjct: 122 VLRRLSRRNFDAQMGDLTTWVSAALTDEDTCVEGFEGEEGKVVTLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL
Match: A0A5D3D1R1 (21 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00630 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 64/109 (58.72%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVA LLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAALLGRLKNNKRMKGRNRA--AVLDCVEVFDAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFD+QMGDLTTWV A L DEDTC+  F+GERGKVV+ LRN+
Sbjct: 122 VLRRLSRRNFDSQMGDLTTWVSAALTDEDTCVEGFEGERGKVVSLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL
Match: A0A1S3BSW5 (21 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492810 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.6e-22
Identity = 64/109 (58.72%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 30  SSFSHGGVG-AIAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR--- 89
           + ++  GV   I +AKKVA LLGRL NNKRMKGRN+A  AV  C   F A IDE HR   
Sbjct: 62  TKWARAGVSVTITEAKKVAALLGRLKNNKRMKGRNRA--AVLDCVEVFDAAIDELHRSLG 121

Query: 90  ------QRNFDAQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
                 +RNFD+QMGDLTTWV A L DEDTC+  F+GERGKVV+ LRN+
Sbjct: 122 VLRRLSRRNFDSQMGDLTTWVSAALTDEDTCVEGFEGERGKVVSLLRNR 168

[Close]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL
Match: A0A6J1L076 (pectinesterase inhibitor 6 OS=Cucurbita maxima OX=3661 GN=LOC111497889 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 54/98 (55.10%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 40  IAKAKKVAGLLGRLTNNKRMKGRNKAIQAVWRC---FGAVIDEFHR---------QRNFD 99
           I +AK VA  L RL NN+RMKGRN+A  AV  C   F   IDE HR         +  FD
Sbjct: 73  ITEAKAVARFLVRLKNNRRMKGRNRA--AVSDCVEVFEDAIDELHRSLGVLRRLSRSKFD 132

Query: 100 AQMGDLTTWVRAMLMDEDTCIRRFKGERGKVVNFLRNQ 126
           AQMGDLTTWV A L DEDTC+  F+GERG++VN +RN+
Sbjct: 133 AQMGDLTTWVSAALTDEDTCVDGFEGERGRLVNLIRNR 168

The following BLAST results are available for this feature:

BLAST of CsaV3_3G026780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650765.1	5.3e-65	100.00	hypothetical protein Csa_017530 [Cucumis sativus]	[more]
KAE8646342.1	5.6e-22	59.63	hypothetical protein Csa_016554 [Cucumis sativus]	[more]
XP_011659361.1	5.6e-22	59.63	pectinesterase inhibitor 6 [Cucumis sativus]	[more]
XP_008451567.1	9.5e-22	58.72	PREDICTED: 21 kDa protein [Cucumis melo] >KAA0067994.1 21 kDa protein [Cucumis m...	[more]
XP_038896715.1	1.0e-20	56.88	pectinesterase inhibitor 6-like [Benincasa hispida]	[more]

BLAST of CsaV3_3G026780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDI5	3.0e-45	97.87	PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G560260 PE=4 S...	[more]
A0A0A0KAX0	2.7e-22	59.63	PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G397050 PE=4 S...	[more]
A0A5D3D1R1	4.6e-22	58.72	21 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00630...	[more]
A0A1S3BSW5	4.6e-22	58.72	21 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492810 PE=4 SV=1	[more]
A0A6J1L076	5.8e-17	55.10	pectinesterase inhibitor 6 OS=Cucurbita maxima OX=3661 GN=LOC111497889 PE=4 SV=1	[more]

BLAST of CsaV3_3G026780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006501	Pectinesterase inhibitor domain	PFAM	PF04043	PMEI	coord: 39..117 e-value: 2.3E-6 score: 28.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR31080	PECTINESTERASE INHIBITOR-LIKE	coord: 37..125
None	No IPR available	PANTHER	PTHR31080:SF158	PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN	coord: 37..125
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 40..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G026780.1	CsaV3_3G026780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004857	enzyme inhibitor activity