CsaV3_3G025140 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G025140
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase
Locationchr3: 22064175 .. 22064355 (+)
RNA-Seq ExpressionCsaV3_3G025140
SyntenyCsaV3_3G025140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

mRNA sequence

ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

Coding sequence (CDS)

ATGGAGGAAGGGAAGATCGTTGTGATTCGTGATTGGGAAGTACCAAGGTCAGTCACTGACTTGCGCTCCTTCCTCGGGTTAGCCAATTATTACAGGCGATTCGTGGAAGGATTCTCTAAAAGAGCAAGCCCGTTGACTGACTTGCTGAAGAAGGACAACAAGTGGAATTGGACACCGAAAT

Protein sequence

MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPKX
Homology
BLAST of CsaV3_3G025140 vs. NCBI nr
Match: KAE8650736.1 (hypothetical protein Csa_023415, partial [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
          MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK
Sbjct: 1  MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: TYK07955.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKIV IRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 876 MEEGKIVAIRDWAIPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: TYK26634.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKI VIRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 876 MEEGKIAVIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: KAA0060093.1 (uncharacterized protein E6C27_scaffold39G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKIV IRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 355 MEEGKIVAIRDWTMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 414

BLAST of CsaV3_3G025140 vs. NCBI nr
Match: KAA0035531.1 (uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKI  IRDW VP+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 407 MEEGKIAAIRDWAVPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 466

BLAST of CsaV3_3G025140 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-09
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   EEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           +  K+  +  W  P++ T+LR FLGL  YYRRFV+ + K   PLT+LLKK N   WT
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWT 102

BLAST of CsaV3_3G025140 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

BLAST of CsaV3_3G025140 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

BLAST of CsaV3_3G025140 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

BLAST of CsaV3_3G025140 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-08
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0

Query: 9   IRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTP 60
           +  W+ P++  +LR FLG  NY R+F+   S+   PL +LLKKD +W WTP
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTP 680

BLAST of CsaV3_3G025140 vs. ExPASy TrEMBL
Match: A0A5D3C8Z6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00760 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKIV IRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 876 MEEGKIVAIRDWAIPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

BLAST of CsaV3_3G025140 vs. ExPASy TrEMBL
Match: A0A5D3DSU8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002800 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKI VIRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 876 MEEGKIAVIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

BLAST of CsaV3_3G025140 vs. ExPASy TrEMBL
Match: A0A5A7UVU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold39G00090 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-21
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKIV IRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 355 MEEGKIVAIRDWTMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 414

BLAST of CsaV3_3G025140 vs. ExPASy TrEMBL
Match: A0A5A7T1S6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001970 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKI  IRDW VP+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 407 MEEGKIAAIRDWAVPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 466

BLAST of CsaV3_3G025140 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1   MEEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWTPK 60
           MEEGKI  IRDW +P+SV++LRSFLGLANYYRRFVEGFSKRASPLT+LLKKD  WNW P+
Sbjct: 876 MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

BLAST of CsaV3_3G025140 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-10
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 2   EEGKIVVIRDWEVPRSVTDLRSFLGLANYYRRFVEGFSKRASPLTDLLKKDNKWNWT 59
           +  K+  +  W  P++ T+LR FLGL  YYRRFV+ + K   PLT+LLKK N   WT
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWT 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650736.16.1e-27100.00hypothetical protein Csa_023415, partial [Cucumis sativus][more]
TYK07955.15.0e-2181.67reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26634.18.6e-2181.67polyprotein [Cucumis melo var. makuwa][more]
KAA0060093.18.6e-2181.67uncharacterized protein E6C27_scaffold39G00090 [Cucumis melo var. makuwa][more]
KAA0035531.11.1e-2081.67uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P925237.8e-0947.37Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9UR072.3e-0845.10Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT412.3e-0845.10Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT342.3e-0845.10Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT352.3e-0845.10Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5D3C8Z62.4e-2181.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26... [more]
A0A5D3DSU84.2e-2181.67Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002800 P... [more]
A0A5A7UVU04.2e-2181.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T1S65.4e-2181.67Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3C4R11.2e-2080.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
Match NameE-valueIdentityDescription
ATMG00860.15.6e-1047.37DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 4..60
e-value: 2.8E-21
score: 77.3
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..54
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 1..54
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 3..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G025140.1CsaV3_3G025140.1mRNA