CsaV3_3G023790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 21649001 .. 21649455 (-)
RNA-Seq Expression	CsaV3_3G023790
Synteny	CsaV3_3G023790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCGTAGCCGTTCTGCTAAGGCCGTCGTCGCGCACATCTCTGTGTAGCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGA

mRNA sequence

ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGA

Coding sequence (CDS)

ATGGCCGCCGCCCACCCTTCAACCTCACGCCAACTTCTTCTCCTCCTCCATCAGTTTCGATTTATCGCGCCGCCGAAGTCTTGCGTTGTTCGGGTTGCACAAGCCGATCACCGGCCGTCAAGCTTGCAAGCGCTGCGTGACTCTCCATCGATCAATCATCCCGAACCCCGACGACTACCCGAACCACGTTCGCCGCGCGTCGGGAGACCACTCCAAGCCGTGCAGCCTCCATCTTTTCGTCTGACCGAGCCGTCCAACTTCTCCCATCACTCAGTTACGTTTTGCACATTGTTGCCCAACTCGGTTCGTAGACCTTTGCCCTTTTACTCTACGACTTGCAGTGATTTTTCGGTTGTAATTAATTGTCGTGGGTTATGGATCTGTGATGTCTCTTTGGGAATGCAATGTTGA

Protein sequence

MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLPEPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVINCRGLWICDVSLGMQC*

Homology

[Close]

BLAST of CsaV3_3G023790 vs. NCBI nr
Match: KGN58053.1 (hypothetical protein Csa_010298 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 3.7e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60
           MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP
Sbjct: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60

Query: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120
           EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI
Sbjct: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120

Query: 121 NCRGLWICDVSLGMQC 137
           NCRGLWICDVSLGMQC
Sbjct: 121 NCRGLWICDVSLGMQC 136

[Close]

BLAST of CsaV3_3G023790 vs. ExPASy TrEMBL
Match: A0A0A0L8E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G466700 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.8e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60
           MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP
Sbjct: 1   MAAAHPSTSRQLLLLLHQFRFIAPPKSCVVRVAQADHRPSSLQALRDSPSINHPEPRRLP 60

Query: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120
           EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI
Sbjct: 61  EPRSPRVGRPLQAVQPPSFRLTEPSNFSHHSVTFCTLLPNSVRRPLPFYSTTCSDFSVVI 120

Query: 121 NCRGLWICDVSLGMQC 137
           NCRGLWICDVSLGMQC
Sbjct: 121 NCRGLWICDVSLGMQC 136

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023790 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58053.1	3.7e-72	100.00	hypothetical protein Csa_010298 [Cucumis sativus]	[more]

BLAST of CsaV3_3G023790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E5	1.8e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G466700 PE=4 SV=1	[more]

BLAST of CsaV3_3G023790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023790.1	CsaV3_3G023790.1	mRNA