CsaV3_3G023630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G023630
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGag-pol polyprotein
Locationchr3: 21394683 .. 21394862 (-)
RNA-Seq ExpressionCsaV3_3G023630
SyntenyCsaV3_3G023630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTACAATGGAAAGAAGAAACGACAACCCGTGCAATTCAGAAGGAGAAGATTCAAAGTTTAATGGAAGAAAAATCAAGTTTAATGGAAGAAAATCAAAGACTTCTAATGATCATTTCCTCTCTAAAACTCAATTTGAAAGAAGTTCAGATGGAACATGAGCAACTTGAGAAATCT

mRNA sequence

ATGGTGCTACAATGGAAAGAAGAAACGACAACCCGTGCAATTCAGAAGGAGAAGATTCAAAGTTTAATGGAAGAAAAATCAAGTTTAATGGAAGAAAATCAAAGACTTCTAATGATCATTTCCTCTCTAAAACTCAATTTGAAAGAAGTTCAGATGGAACATGAGCAACTTGAGAAATCT

Coding sequence (CDS)

ATGGTGCTACAATGGAAAGAAGAAACGACAACCCGTGCAATTCAGAAGGAGAAGATTCAAAGTTTAATGGAAGAAAAATCAAGTTTAATGGAAGAAAATCAAAGACTTCTAATGATCATTTCCTCTCTAAAACTCAATTTGAAAGAAGTTCAGATGGAACATGAGCAACTTGAGAAATCT

Protein sequence

MVLQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS
Homology
BLAST of CsaV3_3G023630 vs. NCBI nr
Match: KAE8650715.1 (hypothetical protein Csa_010579, partial [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 7.1e-20
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MVLQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 60
          MVLQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS
Sbjct: 1  MVLQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 60

BLAST of CsaV3_3G023630 vs. NCBI nr
Match: KAA0041665.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+T  RAIQKE+IQ        LMEEN+RL+ IISSLKLNLKEVQ +++Q  KS
Sbjct: 214 WKEDTEARAIQKERIQ-------DLMEENERLMSIISSLKLNLKEVQKDYDQTIKS 262

BLAST of CsaV3_3G023630 vs. NCBI nr
Match: KAA0050329.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK03546.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+   RAIQKE+IQ        LMEEN+RL+ IISSLKL LKE+Q EH+Q  KS
Sbjct: 261 WKEDNEARAIQKERIQ-------DLMEENERLMSIISSLKLKLKEIQNEHDQTIKS 309

BLAST of CsaV3_3G023630 vs. NCBI nr
Match: KAA0050618.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07822.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   LQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           +QWKE++  RAIQKE+ Q        LMEEN+RL+ +ISSLKL LKEVQ E++Q  KS
Sbjct: 255 VQWKEDSEARAIQKERTQ-------DLMEENERLMSVISSLKLKLKEVQCEYDQTLKS 305

BLAST of CsaV3_3G023630 vs. NCBI nr
Match: KAA0067191.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26039.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+T  RAIQKE+IQ        LMEEN+RL+ +ISS+KL LK +Q EH+Q  KS
Sbjct: 165 WKEDTEARAIQKERIQ-------DLMEENERLMSVISSVKLKLKAIQNEHDQTIKS 213

BLAST of CsaV3_3G023630 vs. ExPASy TrEMBL
Match: A0A5A7TJQ7 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001470 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+T  RAIQKE+IQ        LMEEN+RL+ IISSLKLNLKEVQ +++Q  KS
Sbjct: 214 WKEDTEARAIQKERIQ-------DLMEENERLMSIISSLKLNLKEVQKDYDQTIKS 262

BLAST of CsaV3_3G023630 vs. ExPASy TrEMBL
Match: A0A5A7UA03 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00400 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+   RAIQKE+IQ        LMEEN+RL+ IISSLKL LKE+Q EH+Q  KS
Sbjct: 261 WKEDNEARAIQKERIQ-------DLMEENERLMSIISSLKLKLKEIQNEHDQTIKS 309

BLAST of CsaV3_3G023630 vs. ExPASy TrEMBL
Match: A0A5A7U5R6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001170 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 3   LQWKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           +QWKE++  RAIQKE+ Q        LMEEN+RL+ +ISSLKL LKEVQ E++Q  KS
Sbjct: 255 VQWKEDSEARAIQKERTQ-------DLMEENERLMSVISSLKLKLKEVQCEYDQTLKS 305

BLAST of CsaV3_3G023630 vs. ExPASy TrEMBL
Match: A0A5D3DRM4 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00550 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHEQLEKS 61
           WKE+T  RAIQKE+IQ        LMEEN+RL+ +ISS+KL LK +Q EH+Q  KS
Sbjct: 165 WKEDTEARAIQKERIQ-------DLMEENERLMSVISSVKLKLKAIQNEHDQTIKS 213

BLAST of CsaV3_3G023630 vs. ExPASy TrEMBL
Match: A0A5D3E2X5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00040 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 5   WKEETTTRAIQKEKIQSLMEEKSSLMEENQRLLMIISSLKLNLKEVQMEHE 56
           WKE+T  RAIQKE+IQ        LMEEN+RL+  ISSLKL LKEVQ EH+
Sbjct: 216 WKEDTEARAIQKERIQ-------DLMEENERLMSFISSLKLKLKEVQNEHD 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650715.17.1e-20100.00hypothetical protein Csa_010579, partial [Cucumis sativus][more]
KAA0041665.13.8e-0562.50gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0050329.11.1e-0460.71gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK03546.1 gag-proteinase... [more]
KAA0050618.13.2e-0456.90gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07822.1 gag-pol polyprotein [... [more]
KAA0067191.14.2e-0457.14gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26039.1 gag-pol polyprotein [... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TJQ71.8e-0562.50Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G0... [more]
A0A5A7UA035.4e-0560.71Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7U5R61.6e-0456.90Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737... [more]
A0A5D3DRM42.0e-0457.14Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567... [more]
A0A5D3E2X52.7e-0462.75Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G023630.1CsaV3_3G023630.1mRNA