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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATGAAGGACACCATAGATGTTGCGTCTGGATACATGCAATGGTACGTCAATATTAGTCGACGATACATCACAAAGGTAGGAGCATCATACCATTTTTTGGTAAGGGTTTATTATTTAATTGAATCAATTAAAAATTGTTTAGTTACATAGTCTAATTGTAATTGTATGGACTGTAGGAAAAGTTTGACTAGTTGAAAATATCTAGTATACCATCAAATGCGGTGACTAGAACGATAAAACTTGTTTTGCGTAATTTGACATCCATATATAGAGTAAGATATTTTGAAGGCGATGTTCCTGATGAAGAACAAGGTGATCCAACTAGACATGAGGATTTTCCATTTTAACCTCATTTTCAAAATCAGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA mRNA sequence ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATGAAGGACACCATAGATGTTGCGTCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA Coding sequence (CDS) ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATGAAGGACACCATAGATGTTGCGTCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA Protein sequence MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD*
Homology
BLAST of CsaV3_3G023300 vs. NCBI nr
Match: KAE8650707.1 (hypothetical protein Csa_010039 [Cucumis sativus]) HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query: 1 MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60
MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ
Sbjct: 1 MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60
Query: 61 TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 99
TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD
Sbjct: 61 TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 98
BLAST of CsaV3_3G023300 vs. ExPASy TrEMBL
Match: A0A0A0L8B6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 3.4e-33 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 27 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ 86
TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ
Sbjct: 26 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ 85
Query: 87 QGRISRNSSTQD 99
QGRISRNSSTQD
Sbjct: 86 QGRISRNSSTQD 97
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAE8650707.1 | 4.2e-49 | 100.00 | hypothetical protein Csa_010039 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| A0A0A0L8B6 | 3.4e-33 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 74..98 |
Relationships
The following mRNA feature(s) are a part of this gene:
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